BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483214
Length=673
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41420.1 | Symbols: | proline-rich family protein | chr2:17... 891 0.0
AT3G57160.1 | Symbols: | unknown protein; Has 3 Blast hits to ... 87.9 1e-16
> AT2G41420.1 | Symbols: | proline-rich family protein | chr2:17266477-17268024
REVERSE LENGTH=765
Length=765
Score = 891 bits (482), Expect = 0.0
Identities = 635/701 (91%), Gaps = 41/701 (6%)
Strand=Plus/Plus
Query 1 AATAACTGCAAAACGCGTTTTACTTAAAACActctcctcttttcctttttcttctct-t- 58
||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||| |
Sbjct 12 AATAACTGCAAAACGCGTTATACTTAAAACACTCTCCTCTTTTCCTTGTCCTTCTCTATC 71
Query 59 tc-tct-ttcacttttcttctggatctaaggttcgtgatctccttcctctctACGAAGTT 116
| ||| | || ||| ||| |||||||||||||||||||||||| |||||||||||||
Sbjct 72 GCTTCTATAAAC-TTT-TTC--GATCTAAGGTTCGTGATCTCCTTCTTCTCTACGAAGTT 127
Query 117 TACGC-TTTTCTTCAAAGGAGATCAAGAACAATGAGCCAGTACAATCAACCTCCTGTCGG 175
||| | ||||||||||| | | | ||||||||||||||||||||||||||| || ||
Sbjct 128 TACACTTTTTCTTCAAA-G-G----A-AACAATGAGCCAGTACAATCAACCTCCCGTTGG 180
Query 176 TGTTCCTCCTCCTCAAGGTTATCCACCGGAGGGATATCCAAAGGATGCTTATCCACCACA 235
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 181 TGTTCCTCCTCCTCAAGGTTATCCACCGGAGGGATATCCAAAAGATGCTTATCCACCACA 240
Query 236 AGGATATCCTCCTCATGGATATCCTCAGCAAGGCTATCCACCTCAGGGATATCCTCAACA 295
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AGGATATCCTCCTCAGGGATATCCTCAGCAAGGCTATCCACCTCAGGGATATCCTCAACA 300
Query 296 AGGTTA---TC--C-------TCCT---CCGTACGCGCCGCAATATCCTCCGCCGCCGCA 340
|||||| || | |||| ||||||||||| ||||||||||| || |||||
Sbjct 301 AGGTTATCCTCAGCAAGGATATCCTCCACCGTACGCGCCTCAATATCCTCCACCACCGCA 360
Query 341 GCATCAGCAACAACAGAACAGTCCTGGGTTTCTAGAAGGATGtcttgctgctctgtgctg 400
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 361 GCATCAGCAACAACAGAGCAGTCCTGGCTTTCTAGAAGGATGTCTTGCTGCTCTGTGTTG 420
Query 401 ttgctgtctcttggatgcttgcttctgattggagtctctctctctctGCATAAAGCTTCG 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TTGCTGTCTCTTGGATGCTTGCTTCTGATTGGAGTCTCTCTCTCTCTGCATAAAGCTTCG 480
Query 461 GGATTTATTTGTAAGAGGGTTTTGGTTAAACAAAAACCTTAATTGATTTGTGGG-CATTA 519
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 481 GGATTTATTTGTAAGAGGGTTTTGGTTAAACAAAAACCTTAATTGATTTGTGGGGCATTA 540
Query 520 AAAATGAATCTATCCATGATTCTCTTTCGTTTTATGCTTTA-TGTTCTTCGGTTCA---C 575
||||||||||| || ||||||||||||||||||||| | || |||||||||||||| |
Sbjct 541 AAAATGAATCTCTCGATGATTCTCTTTCGTTTTATG-TGTAATGTTCTTCGGTTCATAAC 599
Query 576 ATT--AACTATTGTCTATCGACGTTCTGGCTTAGTTTGGATTTGATTATGGGAATGTAAA 633
||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 600 ATTTTAACTATTGTCTATCGACGTTCTGCCTTAGTTTGTATTTGATTATGGGAATGTAAA 659
Query 634 TTGGT-GGGTGGACACTATTCTATGCCCTAGTTTATTGCTT 673
||||| ||| | ||||||||||||||| |||||||||||||
Sbjct 660 TTGGTTGGGAG-ACACTATTCTATGCCATAGTTTATTGCTT 699
> AT3G57160.1 | Symbols: | unknown protein; Has 3 Blast hits to
3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr3:21157610-21158816 REVERSE LENGTH=609
Length=609
Score = 87.9 bits (47), Expect = 1e-16
Identities = 132/170 (78%), Gaps = 17/170 (10%)
Strand=Plus/Plus
Query 144 ACAATGAGCCAGTACAATCAACCTCCTGTCGGTGTTCCTCCTCCTCAAGGTTATCCACCG 203
|||||||| || |||| | ||| |||| |||||||||||| |||| | |||||| ||
Sbjct 59 ACAATGAGTCA--ACAA-CCTCCTGCTGTTGGTGTTCCTCCTTCTCATGCTTATCCGGCG 115
Query 204 GAGGGA-TATCCAAAGGATGCTTATCCACCACAAGGATATCCTCCTCATGGATATCCTCA 262
|| ||| | || ||||| ||||||||||| | || | | || | ||||||||
Sbjct 116 GAAGGACCA-CCCAAGGACGCTTATCCACCTC-CGG-GA-CAACC-C-----TATCCTCA 165
Query 263 GCAAGGCTATCCACCT---CAGGGATATCCTCAACAAGGTTATCCTCCTC 309
|||||| ||||| ||| |||||||||||||||||||||||||||||||
Sbjct 166 GCAAGGATATCCTCCTCCGCAGGGATATCCTCAACAAGGTTATCCTCCTC 215
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32551727256
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5