BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483215
Length=895
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41430.1 | Symbols: ERD15, LSR1, CID1 | dehydration-induced ... 1029 0.0
> AT2G41430.1 | Symbols: ERD15, LSR1, CID1 | dehydration-induced
protein (ERD15) | chr2:17269232-17270542 FORWARD LENGTH=995
Length=995
Score = 1029 bits (557), Expect = 0.0
Identities = 690/750 (92%), Gaps = 26/750 (3%)
Strand=Plus/Plus
Query 163 CCAAGATCTAGAGATTTGAGAATGGCGATGGTATCAGGAAGACGATCTACTCTAAACCCC 222
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 255 CCATGATCTAGAGTTTTGAGAATGGCGATGGTATCAGGAAGACGATCTACTCTAAACCCC 314
Query 223 GACGCACCTCTCTTTGTTCCGGCAGCTGTACGACAAGTGGAAGATTTCTCACCGGAGTGG 282
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 315 GACGCACCTCTTTTTATTCCGGCAGCTGTACGACAAGTGGAAGATTTCTCACCGGAGTGG 374
Query 283 TGGCAATTGGTCACAACTTCGACTTGGTACCATGACTACTGGATCAG-C--CAGCATCAA 339
||||||||||| ||||||||||||||||||| ||| ||||||||||| | ||||| |||
Sbjct 375 TGGCAATTGGTGACAACTTCGACTTGGTACCCTGATTACTGGATCAGTCAGCAGCAGCAA 434
Query 340 GGTC-CAGATGGTTTCTATGACAATGGAGAGAATGAAAATGGTGGAGGCCAGGTTGATGT 398
|| | | ||||||||||||||||| ||||||||||| ||||||||||| || | |||||
Sbjct 435 GG-CGCGGATGGTTTCTATGACAACGGAGAGAATGAGAATGGTGGAGGTCATATCGATGT 493
Query 399 AGCTGATCTTCTTCCAGAATCATTTGATTTTGATGACATGGAAGATTTCTTTGAAACTGA 458
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 494 AGCTGATCTTCTTCCAGAATCATTTGATTTTGATGATATGGAAGATTTCTTTGACACTGA 553
Query 459 TGCTGCTGAGTTTGATCAAGGATTTGATGGACGAATGTATTACCAAGCACCTTCCGAATT 518
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 554 TGCTGCTGAGTTTGATCAAGGATTCGATGGAAGAATGTATTACCAAGCACCTTCCGAATT 613
Query 519 CGGCTTTGGAAAGAATGGTGAGATGGTTAGGAAATCAACTGGTAACAGGAGTCCGAAATC 578
|||||||||||||||||||||||||||| |||||||| ||| |||||||| |||| |||
Sbjct 614 TGGCTTTGGAAAGAATGGTGAGATGGTTAAGAAATCAAGTGGAAACAGGAGCCCGAGATC 673
Query 579 GATTGTGGAACCGGCAAAGTATGCGGAAAAGCCAGCGAAATGGGGAAACCAGAGGGTTGC 638
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 674 GATTGTGGAACCAGCTAAGTATGCGGAAAAGCCAGCGAAATGGGGAAACCAGAGGGTTGC 733
Query 639 TGCT-C-CA-AGAAACATCCACCAGCCTCGCTGAAGAAGATATGTTGTTAACTAGTCAGA 695
|||| | | ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 734 TGCTGCTCCGAGAAACATCCACCAGCCTCGCTGAAGA-GATATGTTGTTAACTAGTCAGA 792
Query 696 -A-GTCAGAGCAGTTTGGTCC-TGTATCTTTAGCCACCACCACTGTACCTTTGTAATTTT 752
| |||||||||||| |||| |||||||||||||||||| |||||||||||||||||
Sbjct 793 GAAGTCAGAGCAGTTCGGTCTGTGTATCTTTAGCCACCAC---TGTACCTTTGTAATTTT 849
Query 753 TAGTATTTGCTTCCACATA-AAAAATCTGTAACTTTGTACCTTTATGATGTTCATTCTCA 811
||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||
Sbjct 850 TAGTATTTGCTTCCACA-ACAAAAATCTGTAACTTTGTATCTTTATGATGTTCATTCTCA 908
Query 812 A-CTTGTTGTTATCTCaaaaatgtaaaaacataaaaaaaa-----TGTAAACTTTGAAGA 865
| |||| | ||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 909 AACTTGCT---ATCACAAAAATGTAAAAACATAAAAAAAAAAAAATGTAAACTTTGAAGA 965
Query 866 GAAATGAGAACTAGAGTTTATTTCCCACCT 895
||||||||||||||||||||||||| ||||
Sbjct 966 GAAATGAGAACTAGAGTTTATTTCCTACCT 995
Score = 219 bits (118), Expect = 5e-56
Identities = 157/174 (90%), Gaps = 10/174 (6%)
Strand=Plus/Plus
Query 1 AGCTTCGTCACCGAACCTTACTTTATATATTAGTCCTTCTTCTTCTCATCTTCTGGCAAC 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 AGCTTCGTCACCGAACCTTACTTTATATATTAGTCCTTCTTCTTCTCATCTTCTCGCAAC 60
Query 61 GTAGGTTCTGGTGATTGATCCTAATCCGTTTTGCTTGTTAAAAAGA-A-GAAGACATATT 118
|||||||||||||| |||||||||||||||| |||| ||||||| | | |||||||||||
Sbjct 61 GTAGGTTCTGGTGAATGATCCTAATCCGTTTAGCTT-TTAAAAAAATAAGAAGACATATT 119
Query 119 TTTATCAA----A-CAACTTGAGCAAGTAGAAGCAGATATTTTCCTCAGCCAAG 167
| ||||| | |||||||||||||| | |||||||||||||||| ||||||
Sbjct 120 T--ATCAACTTGATCAACTTGAGCAAGTTGCAGCAGATATTTTCCTCGGCCAAG 171
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43703707890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5