BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483223
Length=1814
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41460.1 | Symbols: ARP | apurinic endonuclease-redox protei... 2287 0.0
AT3G60950.1 | Symbols: | C2 calcium/lipid-binding endonuclease... 340 2e-92
AT3G61030.1 | Symbols: | Calcium-dependent lipid-binding (CaLB... 291 2e-77
> AT2G41460.1 | Symbols: ARP | apurinic endonuclease-redox protein
| chr2:17285723-17288928 FORWARD LENGTH=1778
Length=1778
Score = 2287 bits (1238), Expect = 0.0
Identities = 1383/1452 (95%), Gaps = 14/1452 (1%)
Strand=Plus/Plus
Query 366 GAAACTTGGGCTACCTGTGAAAGGACGCAAACAAAAACTTATCTCAACTTTACGACTTCA 425
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 338 GAAACTTGGGGTACCTGTGAAAGGACGCAAACAAGAACTTATCTCAACTTTACGACTTCA 397
Query 426 TATGGACAGCAATTTACCTGATCAAAAGGAAACTACTTCGTCCACCCGTTCAGAAAGTGT 485
|||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||
Sbjct 398 TATGGACAGCAATTTACCTGATCAAAAGGAAACTTCTTCGTCCACCCGTTCGGATAGTGT 457
Query 486 CACGATCAAAAGAAAGATCAGAAACAGGGAAGAGCCTACTGAAGATGACTGCAGTAACTC 545
||| ||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||
Sbjct 458 CACCATCAAAAGAAAGATCAGCAACAGGGAAGAGCCTACTGAAGATGAATGCACTAACTC 517
Query 546 TGAAGCTTATGGCACTGAACAAGGAGAAAAAAGAGTAAAACAGTCTACTGAGAAAAACTT 605
||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 518 TGAAGCTTATGACATTGAACACGGAGAAAAAAGAGTAAAACAGTCTACTGAGAAAAACTT 577
Query 606 GAAAGCTAAAGTTTCTGCGAAAGCCATCTCGAAAGAACAGAAGTCATTGACAAAAACAGG 665
|||||||||||||||||||||||| ||| ||||||||||||||||||||| | ||||||
Sbjct 578 GAAAGCTAAAGTTTCTGCGAAAGCTATCGCGAAAGAACAGAAGTCATTGATGAGAACAGG 637
Query 666 TAAGCAGCAAATTCATTCAAAAGAGGAAGCATCATCGACCATCTCTAGTGTATTACTGAA 725
||||||||||||||| |||||||| ||| ||||||||||||||||||||| |||||||||
Sbjct 638 TAAGCAGCAAATTCAGTCAAAAGAAGAAACATCATCGACCATCTCTAGTGAATTACTGAA 697
Query 726 ACCTGAAGAAATGATCTCATCCCTGAGTCAAAGTGAACCGTGGACTGTACTTGCTCATAA 785
| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 698 AACTGAAGAAATTATCTCATCCCCGAGTCAAAGTGAACCGTGGACTGTACTTGCTCATAA 757
Query 786 GAAGCCTCAGAAGGACTGGAAAGCTTATAACCCAAAGACAATGAGACCTCCCCCTCTACC 845
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 758 GAAGCCTCAGAAGGACTGGAAAGCTTACAACCCAAAGACAATGAGACCTCCCCCTCTACC 817
Query 846 AGAGGGTACCAAGTGTGTGAAGGTTATGACTTGGAATGTTAATGGACTGAGAGCATTGTT 905
|||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 818 AGAGGGTACCAAATGTGTGAAAGTTATGACTTGGAATGTTAATGGACTGAGAGGATTGTT 877
Query 906 GAAGTTAGAGAGCTTCTCTGCTCTGCAGCTTGCGCAAAGAGAAAACTTTGATATCTTGTG 965
|||||| |||||||||||||||||||||||||| ||||||||||| ||||| ||||||||
Sbjct 878 GAAGTTTGAGAGCTTCTCTGCTCTGCAGCTTGCCCAAAGAGAAAATTTTGACATCTTGTG 937
Query 966 CTTGCAGGAGACTAAACTCCAGGT-AAAGGATGTTGAGGAAATCAAGAATACTCTTATTG 1024
|||||||||||||||||||||||| ||| |||||||||||||| ||||| ||||||||||
Sbjct 938 CTTGCAGGAGACTAAACTCCAGGTGAAA-GATGTTGAGGAAATTAAGAAAACTCTTATTG 996
Query 1025 ATGGCTATGATCATAGTTTCTGGTCCTGCAGCGTCTCAAAACTTGGCTACTCTGGAACTG 1084
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 997 ATGGCTATGATCATAGTTTCTGGTCCTGCAGCGTCTCAAAACTTGGCTACTCTGGAACTG 1056
Query 1085 CAATAATCTCACGGATAAAACCACTCTCAGTTAGATATGGTACTGGTCTATCTGGATCAG 1144
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1057 CAATAATCTCACGGATAAAACCACTCTCAGTTAGATATGGTACTGGTCTATCTGG-TCA- 1114
Query 1145 ATCATGACATGGAAGGGCGTATTGTAACTGCTGAATTCGACTCCTTCTACTTGATAAATA 1204
| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1115 -T---GACACGGAAGGGCGTATTGTAACTGCTGAATTCGACTCCTTCTACTTGATAAATA 1170
Query 1205 CTTACGTCCCTAATTCCGGAGATGGCTTAAAAAGACTGTCATACAGGATCGAAGAATGGG 1264
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1171 CTTATGTCCCTAATTCCGGAGATGGATTAAAAAGACTGTCATACAGGATCGAAGAATGGG 1230
Query 1265 ATCGAACCCTCAGCAACCATATCAAAGAGCTGGAAAAGTCTAAGCCTGTAGTCTTGACGG 1324
|||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||
Sbjct 1231 ATCGAACCCTCAGCAATCACATCAAAGAGCTGGAGAAGTCTAAGCCTGTAGTCTTGACGG 1290
Query 1325 GTGATCTAAACTGTGCTCATGAAGAAATTGACATCTTCAATCCTGCGGGGAACAAAAGGA 1384
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1291 GTGATCTAAACTGTGCTCATGAAGAAATTGACATCTTCAATCCTGCGGGGAACAAAAGAA 1350
Query 1385 GTGCTGGTTTTACAATAGAAGAAAGGCAGTCCTTTGGTGCAAACTTCTTAGACAAGGGAT 1444
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1351 GTGCTGGTTTTACAATAGAAGAAAGGCAGTCCTTTGGTGCAAACTTGTTAGACAAGGGAT 1410
Query 1445 TTGTAGATACCTTTAGAAAACAACATCCTGGTGTTGTCGGTTACACTTATTGGGGTTATC 1504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1411 TTGTAGATACCTTTAGAAAACAACATCCTGGTGTTGTCGGTTACACTTATTGGGGTTATC 1470
Query 1505 GCCATGGTGGCCGCAAAACCAACAGAGGATGGAGACTGGACTACTTCTTGGTGTCCGAAT 1564
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 1471 GCCATGGTGGCCGCAAAACCAACAAAGGATGGAGACTGGACTACTTCTTGGTGTCCCAAT 1530
Query 1565 CAATTGCAGCCAATGTCCATGATTCTTACATCCTCCCTGATATCAATGGAAGTGATCATT 1624
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1531 CAATTGCGGCCAATGTCCATGATTCTTACATCCTCCCTGATATCAATGGAAGTGATCATT 1590
Query 1625 GCCCCATTGGCCTTATTCTCAAGCTCTGATTTATTCAAAGTTTCACCATTCCCAGCTTTT 1684
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 1591 GCCCCATTGGCCTTATTCTCAAGCTCTGATTTGTTCAAAATTTCACCATTCCCAGCTTTT 1650
Query 1685 TTGGCTAAAAGTCTTTAGTAGCTTTTAGCTAGAGATTCACAGGTTTTGCTTCTACAGAAA 1744
| | ||||| ||||| ||||| || |||||||||| ||||| |||||||||||| ||| |
Sbjct 1651 T-G-CTAAA-GTCTTGAGTAGATTGTAGCTAGAGAGTCACATGTTTTGCTTCTAGAGAGA 1707
Query 1745 GCTTGGTCATGTAAAA-TATGGAATAATATATCTATCAGTAAACAGGCTCCAAACAAAT- 1802
||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 1708 GCTTGCTCATGTAAAAATATGGAATAATATATCTATCAGTAAACAGGCTCCAAACAA-TC 1766
Query 1803 TGAGTCTTGTCC 1814
||||||||||||
Sbjct 1767 TGAGTCTTGTCC 1778
> AT3G60950.1 | Symbols: | C2 calcium/lipid-binding endonuclease/exonuclease/phosphatase
| chr3:22524475-22530306 FORWARD
LENGTH=2420
Length=2420
Score = 340 bits (184), Expect = 2e-92
Identities = 254/286 (89%), Gaps = 12/286 (4%)
Strand=Plus/Plus
Query 1099 ATAAAACCACTCTCAGTTAGATATGGTACTGGTCTATCTGGATCAGATCATGACATGGAA 1158
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1504 ATAAAACCACTCAGAGTTAGATATGGTACTGGTCTATCTGGATCAGATCATGACATGGAA 1563
Query 1159 GGGCGTATTGTAACTGCTGAATTCGACTCCTTCTACTTGATAAATACTTACGTCCCTAAT 1218
|||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 1564 GGGCGTATGGTAACTGCTGAATTCGACTCCTTCTACTTGATAAGTACTTATGTCCCTAAT 1623
Query 1219 TCCGGAGATGGCTTAAAAAGACTG-T-C-----A--T-ACA-G-GATCGAAGAATGGGAT 1266
|| | ||||||||||||| ||||| | | | | | | | ||||||||| ||||||
Sbjct 1624 TCTGTAGATGGCTTAAAAGGACTGGTACTCCTCAAATTAAATGCGATCGAAGATTGGGAT 1683
Query 1267 CGAACCCTCAGCAACCATATCAAAGAGCTGGAAAAGTCTAAGCCTGTAGTCTTGACGGGT 1326
|||||||| ||||| || |||||||| ||||| ||||||||||||||||||||||| |||
Sbjct 1684 CGAACCCTTAGCAATCACATCAAAGATCTGGAGAAGTCTAAGCCTGTAGTCTTGACTGGT 1743
Query 1327 GATCTAAACTGTGCTCATGAAGAAATTGACATCTTCAATCCTGCGG 1372
|||||||| |||||||||||||| ||||| ||||||||||| ||||
Sbjct 1744 GATCTAAATTGTGCTCATGAAGAGATTGATATCTTCAATCCCGCGG 1789
Score = 165 bits (89), Expect = 1e-39
Identities = 109/117 (93%), Gaps = 7/117 (6%)
Strand=Plus/Plus
Query 104 GAGGAACAAGAAGTTTCAACAAGAGGCTTATGTCAAATGCTACAGTTACAGTTAAATCTG 163
||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||
Sbjct 1098 GAGGAACAAGAAGTTTCAACAAG-GGCTTATGTCAAATG---C---TACAGTTAAATCTG 1150
Query 164 TACCTTTCTCTATCAACAACAGCAAAGGAAAGGAACTCAAGATAGTAGGAGCAGCTA 220
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1151 TACCTTTCTCTATCAACAACAGCAAGGGAAAGGAACTCAAGATAGTAGGAGCAGCTA 1207
Score = 106 bits (57), Expect = 9e-22
Identities = 61/63 (97%), Gaps = 0/63 (0%)
Strand=Plus/Plus
Query 1472 CTGGTGTTGTCGGTTACACTTATTGGGGTTATCGCCATGGTGGCCGCAAAACCAACAGAG 1531
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1801 CTGGTGTTGTCGGTTACACTTATTAGGGTTATCGCCATGGTGGCCGCAAAACCAACAAAG 1860
Query 1532 GAT 1534
|||
Sbjct 1861 GAT 1863
Score = 102 bits (55), Expect = 1e-20
Identities = 84/97 (87%), Gaps = 5/97 (5%)
Strand=Plus/Plus
Query 550 GCTTATGGCACTGAACAA-GGAGAAAAAAGAGTAAAACAGTCTACTGAGAAAAACTTGAA 608
|||||||||| |||| || |||| |||||||||||||||||||||||||||||||||||
Sbjct 1399 GCTTATGGCATTGAA-AACAGAGAGAAAAGAGTAAAACAGTCTACTGAGAAAAACTTGAA 1457
Query 609 AGCTAAAGT--TT-CTGCGAAAGCCATCTCGAAAGAA 642
||||||||| || || | |||| ||||| ||||||
Sbjct 1458 AGCTAAAGTAGTTTCTTCAAAAGATATCTCAAAAGAA 1494
Score = 95.3 bits (51), Expect = 2e-18
Identities = 56/58 (97%), Gaps = 1/58 (2%)
Strand=Plus/Plus
Query 389 GACGCAAACAAAAACTTATCTCAACTTTACGACTTCATATGGACAGCAATTT-ACCTG 445
||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1342 GACGCAAACAAGAACTTATCTCAACTTTACGACTTCATATGGACAGCAATTTTACCTG 1399
> AT3G61030.1 | Symbols: | Calcium-dependent lipid-binding (CaLB
domain) family protein | chr3:22585655-22590853 FORWARD LENGTH=1843
Length=1843
Score = 291 bits (157), Expect = 2e-77
Identities = 211/236 (89%), Gaps = 8/236 (3%)
Strand=Plus/Plus
Query 1294 CTGGAAAAGTCTAAGCCTGTAGTCTTGACGGGTGATCTAAACTGTGCTCATGAAGAAATT 1353
||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||| |||
Sbjct 1612 CTGGAGAAGTCTAAGCCTGTAGTCTTGACTGGTGATCTAAATTGTGCTCATGAAGAGATT 1671
Query 1354 GACATCTTCAATCCTGCGGGGAACAAAAGGAGTGCTGGTTTTACAATAGAAGAAAGGCAG 1413
|| ||||||||||| |||||||||| ||| |||||||||||||| ||||||||||| |||
Sbjct 1672 GATATCTTCAATCCCGCGGGGAACAGAAGAAGTGCTGGTTTTACGATAGAAGAAAGACAG 1731
Query 1414 TCCTTTGGTGCAAACTTCTTAGACAAGGGATTTGTAGATACCTTTAGAAAACAACAT-CC 1472
| | | ||||||||||||| ||||||||||||||||| ||||| || || ||| |
Sbjct 1732 T-C-----T-CAAACTTCTTAGATAAGGGATTTGTAGATACATTTAGGAAGCAGCATATC 1784
Query 1473 TGGTGTTGTCGGTTACACTTATTGGGGTTATCGCCATGGTGGCCGCAAAACCAACA 1528
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1785 TGGTGTTGTCGGTTACACTTATTAGGGTTATCGCCATGGTGGCCGCAAAACCAACA 1840
Score = 230 bits (124), Expect = 5e-59
Identities = 180/205 (88%), Gaps = 12/205 (6%)
Strand=Plus/Plus
Query 1099 ATAAAACCACTCTCAGTTAGATATGGTACTGGTCTATCTGGATCAGATCATGACATGGAA 1158
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 ATAAAACCACTCAGAGTTAGATATGGTACTGGTCTATCTGGATCAGATCATGACATGGAA 1380
Query 1159 GGGCGTATTGTAACTGCTGAATTCGACTCCTTCTACTTGATAAATACTTACGTCCCTAAT 1218
|||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 1381 GGGCGTATGGTAACTGCTGAATTCGACTCCTTCTACTTGATAAGTACTTATGTCCCTAAT 1440
Query 1219 TCCGGAGATGGCTTAAAAAGACTG-T-C-----A--T-ACA-G-GATCGAAGAATGGGAT 1266
|| | ||||||||||||| ||||| | | | | | | | ||||||||| ||||||
Sbjct 1441 TCTGTAGATGGCTTAAAAGGACTGGTACTCCTCAAATTAAATGCGATCGAAGATTGGGAT 1500
Query 1267 CGAACCCTCAGCAACCATATCAAAG 1291
|||||||| ||||| || |||||||
Sbjct 1501 CGAACCCTTAGCAATCACATCAAAG 1525
Score = 165 bits (89), Expect = 1e-39
Identities = 109/117 (93%), Gaps = 7/117 (6%)
Strand=Plus/Plus
Query 104 GAGGAACAAGAAGTTTCAACAAGAGGCTTATGTCAAATGCTACAGTTACAGTTAAATCTG 163
||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||
Sbjct 1077 GAGGAACAAGAAGTTTCAACAAG-GGCTTATGTCAAATG---C---TACAGTTAAATCTG 1129
Query 164 TACCTTTCTCTATCAACAACAGCAAAGGAAAGGAACTCAAGATAGTAGGAGCAGCTA 220
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1130 TACCTTTCTCTATCAACAACAGCAAGGGAAAGGAACTCAAGATAGTAGGAGCAGCTA 1186
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89758574460
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5