BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483224
Length=799
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41475.1 | Symbols: | Embryo-specific protein 3, (ATS3) | c... 1114 0.0
> AT2G41475.1 | Symbols: | Embryo-specific protein 3, (ATS3) |
chr2:17295074-17296420 REVERSE LENGTH=816
Length=816
Score = 1114 bits (603), Expect = 0.0
Identities = 751/817 (92%), Gaps = 31/817 (4%)
Strand=Plus/Plus
Query 1 TTGTTTGGTTTGTTCCAAA-CCCCAAAAACCACTAAGATCTGACCATTTTGTTCATCGAC 59
|||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 13 TTGTTTGGTTTGATCCAAATCTCCAAAAACCACTAAGATCTGACCATTTTGTTCATCGAC 72
Query 60 TTTTTCAACTCaaaaaaaaaaaaTGCTCAGATTAGCGATTTCGTTGTTTCTTTTTGCATT 119
||||||||||| |||| ||||||||||||||||||||| | |||||||||||||||||
Sbjct 73 TTTTTCAACTC---AAAACAAAATGCTCAGATTAGCGATTCCTTTGTTTCTTTTTGCATT 129
Query 120 ATGCTCTTTGACATCATTTTCGTCAGCAAGATCCTTCATCACCACAAAACCTCGTCCGAT 179
||||||||| |||| |||||| || |||||||||||||||||||||||||||| ||||||
Sbjct 130 ATGCTCTTTCACATTATTTTCTTCTGCAAGATCCTTCATCACCACAAAACCTCTTCCGAT 189
Query 180 TGATTCATTTCTCCCTAAACCAAAGCTAGAGAATGCGGCTGTGTGTTCTTACACGGTGAT 239
|||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 190 TGATTCATTTATTCCTAAACCAAAGCTAGAGAATGCGGCTGCGTGTTCTTACACGGTGAT 249
Query 240 CATTAAGACAAGCTGTTCCTCCGTGTCTTACACTAGAGATAAGATCAGTATATCGTTTGG 299
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 250 CATTAAGACAAGCTGTTCCTCTGTGTCTTACACTAGAGATAAGATCAGTATATCGTTTGG 309
Query 300 TGATGTCTACGGCAACGAGGTGTATGTGAAAAGACTAGACGATCCATCCTCGAGGACGTT 359
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 310 TGATGTCTACGGCAACGAGGTGTATGTGAAGAGACTAGACGATCCATCGTCGAGGACGTT 369
Query 360 CGAAAAGTGTTCTTCAGACACATACAAGATATCGGGACCGTGTATGCGCGACGTTTGTTA 419
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 370 CGAAAAGTGTTCATCAGACACATACAAGATATCGGGACCGTGTATGCGCGACGTTTGTTA 429
Query 420 TCTCTACCTCCTCAGGCAAGGATCCGACGGCTGGAAACCAGAGAACGTTAAGATCTACGG 479
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 430 TCTCTACCTCCTCAGGCAAGGATCCGACGGCTGGAAACCAGAGAATGTTAAGATCTACGG 489
Query 480 TTCATCCATCAGATCAGTCACTTTCTACTACAACCTCTTCTTGCCTAACTCTGTTTGGTA 539
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 490 CTCATCCATCAGATCAGTCACTTTCTACTACAACCTTTTCTTGCCTAACTCTGTTTGGTA 549
Query 540 CGGCTTTAATGTCTGCAATGGCATTAGCAATACCAAGCCTTCTCAACCCATCAGTACTGC 599
||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||| |
Sbjct 550 CGGCTTTAATGTCTGCAATGGCATTGGCAATACCAAGTCTTCTCAACCCATTAGTACTAC 609
Query 600 CTCTTCCGTTGCAGCTATGTAAGATT-A-A-A-----------CAAGGACTTGTGATTGT 645
|||||||||||||||||||||||||| | | | ||||||||||||||| |
Sbjct 610 CTCTTCCGTTGCAGCTATGTAAGATTGATATAATAATTAAAAACAAGGACTTGTGATTAT 669
Query 646 CTGTGGATTGCTATTTTTGTGGCAGAAATACATGGGGAAGAAGTACAAATGTGTTGATCA 705
| ||| |||||||||| | ||||| || | ||| |||||||||||| |||||||||||
Sbjct 670 CGGTGAATTGCTATTTGTATGGCATAACT---TGGAGAAGAAGTACAAGTGTGTTGATCA 726
Query 706 TGAGTGTATTT--GAGa-aaaaaaaaaCATGTATGTTGATGCTTTGATTTGATCTATTGC 762
||||||||||| |||| ||||||||| | | ||| ||| || |||||||||||||||
Sbjct 727 TGAGTGTATTTTTGAGAGAAAAAAAAA-AC-T-TGT--ATG-TT-GATTTGATCTATTGC 779
Query 763 AAGTGGCTACTTGCGAAGTGGCCTAGCCttttttttt 799
||||||||||||||||||||||||||||||||| |||
Sbjct 780 AAGTGGCTACTTGCGAAGTGGCCTAGCCTTTTTCTTT 816
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38881229778
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5