BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483226
Length=1467
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41490.1 | Symbols: GPT | UDP-glcnac-adolichol phosphate glc... 2388 0.0
AT3G57220.1 | Symbols: | Glycosyl transferase family 4 protein... 1467 0.0
AT3G60957.1 | Symbols: | pseudogene of GPT | chr3:22533783-225... 158 2e-37
AT2G41500.1 | Symbols: LIS, EMB2776 | WD-40 repeat family prote... 58.4 2e-07
> AT2G41490.1 | Symbols: GPT | UDP-glcnac-adolichol phosphate glcnac-1-p-transferase
| chr2:17301695-17304211 FORWARD LENGTH=1544
Length=1544
Score = 2388 bits (1293), Expect = 0.0
Identities = 1399/1450 (96%), Gaps = 7/1450 (0%)
Strand=Plus/Plus
Query 1 TCAGGCGAACGGGGTTTGGAGTCAAAATCCAGAGCGCGGGGAAACGAAACGAGCCAGCAA 60
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 TCAGGCGAACGGAGTTTGGAGTCAAAATCCAGAGCGCGGGGAAACGAAACGAGCCAACAA 60
Query 61 ATCCGCCATGGCAGCTCGTAAGAGAGCTTCGTCGATGTCAATTTCCAACAAACCGGATCC 120
|||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||| ||
Sbjct 61 ATCCGCCATGGCAGCTCGTAAGAGAGCTTCATCGATCTCAATTCCCAACAAACCGGA-CC 119
Query 121 GGT-AGAACCCAACTCAGCGCCATCTGAGCAGAAGATGACCCGAAAGACCGTTTCCGCTT 179
|| |||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||
Sbjct 120 CGTCGGAACCCAACTCAGCGCCATCGGAGCAGAAGATGACCCGAAAGACGGTTTCTGCTT 179
Query 180 CCGGTGAAGAATTCCGTCTCGCGCCGCCGAAATTGGGAGTGATCTTCGTGATCTCTACTC 239
||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 180 CCGGTGAGGAATTTCGTCTCGCGCCGCCGAAATTAGGAGTGATCTTCGTGATCTCTACTC 239
Query 240 TTCTCTGCTCGCTCGATCTATACCTTCTCTGTTTCCACTACAAGGTTGACAATGAGCTCA 299
||||||| |||||| ||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 240 TTCTCTGTTCGCTCTATCTATACCTTCTCTGTTTTCACTACAAGGTTGATAATGAGCTCA 299
Query 300 AGCGATCGATTCTAATTAACGCGGGGCTTAGCTTGGTTGGGTCCTTCGTCACTCTCAAGA 359
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 300 AGCGATCGATTCTAATTAACGCGGGGCTTAGCTTGGTTGGGTTTTTCGTCACTCTCAAAA 359
Query 360 TGATTCCTGTTGCTGCCAGATACGTTCTGAGGCGTAATATGTTTGGTTTTGATATCAACA 419
||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 360 TGATTCCTGTTACTGCCAGATACGTTCTGAGACGTAACATGTTTGGTTTTGATATCAACA 419
Query 420 AAAGAGGCACGCCTCAAGGAGATATTAAAGTGCCAGAGTCATTGGGTATTGTTGTTGGTA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AAAGAGGCACGCCTCAAGGAGATATTAAAGTGCCAGAGTCATTGGGTATTGTTGTTGGTA 479
Query 480 TTGTCTTCTTGATCGTGGCGATTATATTTCAGTATTTTAACTTCACTGAAGATTCAAATT 539
||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 480 TTGTCTTTTTGATCGTGGCGATAATATTTCAGTATTTTAACTTCACTGAAGATTCTAATT 539
Query 540 GGCTTGTGGAGTATAATGCAGCATTAGCATCTATTTGCTTCATGATTTTGCTTGGATTTG 599
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 540 GGCTTGTGGAGTATAATGCAGCACTAGCATCTATTTGCTTCATGATTTTGCTTGGATTTG 599
Query 600 TAGATGATGTCCTTGATGTGCCTTGGAGAGTAAAGCTTGTCCTGCCATCTTTTGCTACCC 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TAGATGATGTCCTTGATGTGCCTTGGAGAGTAAAGCTTGTCCTGCCATCTTTTGCTACCC 659
Query 660 TTCCACTTTTGATGGCTTATGCTGGTCATACAACTATTGTTATACCGAAACCTCTAGTTG 719
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 660 TTCCACTTTTGATGGCTTATGCTGGTCATACAACTATTGTTATACCAAAACCTCTTGTTG 719
Query 720 CTTATATTGGCTTGGAAGTGCTTGATCTAGGACGGATATATAAGTTATATATGGGGCTAC 779
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 720 CTTATATTGGCTTGGAAGTGCTTAATCTAGGAAGGATATATAAGTTATATATGGGGCTAC 779
Query 780 TTGCTGTCTTTTGTACAAACTCTATTAACATCCACGCTGGTCTGAATGGCCTTGAAATCG 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TTGCTGTCTTTTGTACAAACTCTATTAACATCCACGCTGGTCTGAATGGCCTTGAAATCG 839
Query 840 GTCAAACAGTTGTTATTGCCGCTGCTATCCTGATACACAACGTTATGCAAATCGGAGCAT 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GTCAAACAGTTGTTATTGCCGCTGCTATCCTGATACACAACGTTATGCAAATCGGAGCAT 899
Query 900 CTGTTGATCCCGAGTATCACCAAGCTCATGCCTTCTCGATATTTCTTACTCAACCGCTGA 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 CTGTTGATCCCGAGTATCACCAAGCTCATGCCTTCTCGATATTTCTTACTCAACCGCTGA 959
Query 960 TGGCCACATCCTTGGCAATGCTTGCTTACAATTGGTATCCTTCTTCAGTTTTTGTTGGAG 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 TGGCCACATCCTTGGCAATGCTTGCTTACAATTGGTATCCTTCTTCAGTTTTTGTTGGAG 1019
Query 1020 ACACTTACACAGTCTTCGCTGGAATGACTATGGCAGTTGTTGGCATTCTGGGTCACTTCA 1079
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1020 ACACTTACACAGTCTTCGCCGGAATGACTATGGCAGTTGTTGGTATTCTGGGTCACTTCA 1079
Query 1080 GTGAAACCCTCCTCATCTTTTTTCTTCCTCAAGTTCTGAACTTTCTATTGTCGCTTCCTC 1139
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1080 GTGAAACCCTCCTCATCTTCTTTCTTCCTCAAGTTCTGAACTTTCTATTATCGCTTCCTC 1139
Query 1140 AGCTTGCTGGGATTGTGAAATGTCCGCGCCATCGTCTCCCAAGGTATGATCCTGCTACCG 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 AGCTTGCTGGGATTGTGAAATGTCCGCGCCATCGTCTCCCAAGGTATGATCCTGCTACCG 1199
Query 1200 GATTACTGACCGGCACAAAAGATGGGACACTTGTCAATGTTTACTTGAGGTTGTTTGGTC 1259
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1200 GATTACTGACCGGCACAAAAGATGGGACACTCGTCAATGTTTACTTGAGGTTGTTTGGTC 1259
Query 1260 CTAAATCAGAAAAGTCTCTTTGCATCCATCTTCTCGTTTTCCAGGCTCTAGCGTGCGCCT 1319
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1260 CTAAATCAGAAAAGTCTCTTTGCATCCATCTTCTCGTTTTCCAGGCTCTAGCCTGCGCCT 1319
Query 1320 TCTGTTTCATACTTCGACACTTTCTTGCTGGTTGGTATAAATAAATCTGCAATCAGACAA 1379
|||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 1320 TCTGCTTCATACTTCGACACTTTCTTGCTGGTTGGTATAAATAG-TCTGCAATCAGAGAA 1378
Query 1380 GTCACAAATACAGAACATTACTTCAGTTCCTTGTAAAATCGTATATAGCAACGTAATTTT 1439
||||||||||||||||||||||| ||| ||||||| ||||||||||| |||| ||||||
Sbjct 1379 GTCACAAATACAGAACATTACTTTAGTACCTTGTACAATCGTATATATCAAC--AATTTT 1436
Query 1440 TTGTTGAACG 1449
| ||| ||||
Sbjct 1437 T-GTT-AACG 1444
Score = 58.4 bits (31), Expect = 2e-07
Identities = 31/31 (100%), Gaps = 0/31 (0%)
Strand=Plus/Plus
Query 1437 TTTTTGTTGAACGAAATGGCAAAATTTTCAA 1467
|||||||||||||||||||||||||||||||
Sbjct 1485 TTTTTGTTGAACGAAATGGCAAAATTTTCAA 1515
> AT3G57220.1 | Symbols: | Glycosyl transferase family 4 protein
| chr3:21174455-21177119 FORWARD LENGTH=1557
Length=1557
Score = 1467 bits (794), Expect = 0.0
Identities = 1067/1199 (89%), Gaps = 18/1199 (2%)
Strand=Plus/Plus
Query 178 TTCCGGTGAAGAATTCC-GTCTCGCGCCGCCGAAATTGGGAGTGATCTTCGTGATCTCTA 236
|||||| || || |||| | |||||||||||||||||||| ||||| ||||||||||||
Sbjct 157 TTCCGGAGAGGATTTCCAG-CTCGCGCCGCCGAAATTGGGCGTGATTTTCGTGATCTCTT 215
Query 237 CTCTTCTCTGCTCGCTCGATCTATACCTTCTCTGTTTCCACTACAAGGTTGACAATGAGC 296
| ||||| || ||||| |||| ||||||||||||||||||||||| |||||||||||||
Sbjct 216 CGCTTCTGTGTTCGCTTTATCTTTACCTTCTCTGTTTCCACTACAATGTTGACAATGAGC 275
Query 297 TCAAGCGAT-CGATTCTAATTAACGCGGGGCTTAGCTTGGTTGGGTCCTTCGTCACTCTC 355
||||||| | |||| || |||||||| ||||||||||||||||| | ||| ||||| |||
Sbjct 276 TCAAGCG-TCCGATCCTCATTAACGCTGGGCTTAGCTTGGTTGGATTCTTTGTCACACTC 334
Query 356 AAGATGATTCCTGTTGCTGCCAGATACGTTCTGAGGCGTAATATGTTTGGTTTTGATATC 415
||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 335 AAGTTGATTCCTGTAGCTGCTAGATACGTTCTGAGGCGTAATATGTTTGGTTTTGATATC 394
Query 416 AACAAAAGAGGCACGCCTCAAGGAGATA-TTAAAGTGCCAGAGTCATTGGGTATTGTTGT 474
|||||||||||||| ||||||||||| | ||| |||||| ||||||||||| ||||||||
Sbjct 395 AACAAAAGAGGCACTCCTCAAGGAGA-AGTTAGAGTGCCTGAGTCATTGGGAATTGTTGT 453
Query 475 TGGTATTGTCTTCTTGATCGTGGCGATTATATTTCAGTAT-TTTAACTTCACTGAAGATT 533
||||||||||||||||| ||||||||| ||||||||| | ||||| |||||||||||||
Sbjct 454 CGGTATTGTCTTCTTGATAGTGGCGATTGTATTTCAGT-TCTTTAATTTCACTGAAGATT 512
Query 534 CAAAT-TGGCTTGTGGAGTATAATGCAGCATTAGCATCTATTTGCTTCATGATTTTGCTT 592
| | |||||||||||||||||||||||| | || ||||||||||||||||| ||||||
Sbjct 513 CGG-TGTGGCTTGTGGAGTATAATGCAGCACTGGCGTCTATTTGCTTCATGATATTGCTT 571
Query 593 GGATTTGTAGATGATGTCCTTGATGTGCCTTGGAGAGT-AAAGCTTGTCCTGCCATCTTT 651
|||||||||||||| ||||||||||||||||||||||| ||| ||| || ||||||||||
Sbjct 572 GGATTTGTAGATGACGTCCTTGATGTGCCTTGGAGAGTGAAA-CTTCTCTTGCCATCTTT 630
Query 652 TGCTACCCTTCCACTTTTGATGGCTTATGCTGGTCATACAACTATTGTTATACCGAAACC 711
||| ||||||||||| ||||||||||||||||| ||||||||||| || |||||||||||
Sbjct 631 TGCAACCCTTCCACTGTTGATGGCTTATGCTGGACATACAACTATCGTCATACCGAAACC 690
Query 712 TCTAGTTGCTTATATTGGCTTGGAAGTGCTTGATCTAGGACGGATATATAAGTTATATAT 771
| ||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 691 TTTAGTTTCTTATATTGGCTTGGAAGTGTTTGATCTAGGACGTATATATAAGTTATATAT 750
Query 772 GGGGCTACTTGCTGTCTTTTGTACAAACTCTATTAACATCCACGCTGGTCTGAATGGCCT 831
|| |||||| ||||||||||| ||||| ||||||||||| ||||||||| ||||||||||
Sbjct 751 GGCGCTACTGGCTGTCTTTTGCACAAATTCTATTAACATTCACGCTGGTTTGAATGGCCT 810
Query 832 TGAAATCGGTCAAACAGTTGTTATTGCCGCTGCTATCCTGATACACAACGTTATGCAAAT 891
||||||||||||||| || |||||||| |||||||| |||||||||||||||||||||||
Sbjct 811 TGAAATCGGTCAAACCGTAGTTATTGCAGCTGCTATTCTGATACACAACGTTATGCAAAT 870
Query 892 CGGAGCATCTGTTGATCCCGAGTATCACCAAGCTCATGCCTTCTCGATATTTCTTACTCA 951
|||||||||||||||| | |||||||| ||||||||||||||||| || | |||||||||
Sbjct 871 CGGAGCATCTGTTGATACTGAGTATCATCAAGCTCATGCCTTCTCAATCTATCTTACTCA 930
Query 952 ACCGCTGATGGCCACATCCTTGGCAATGCTTGCTTACAATTGGTATCCTTCTTCAGTTTT 1011
|| ||||||| |||||||||||||||||||| ||||||||||| |||||| |||||||
Sbjct 931 GCCATTGATGGCAACATCCTTGGCAATGCTTGCCTACAATTGGTACCCTTCTGCAGTTTT 990
Query 1012 TGTTGGAGACACTTACACAGTCTTCGCTGGAATGACTATGGCAGTTGTTGGCATTCTGGG 1071
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 991 TGTTGGAGACACTTACACAGTCTTTGCTGGAATGACTATGGCAGTTGTTGGCATTCTCGG 1050
Query 1072 TCACTTCAGTGAAACCCTCCTCATCTTTTTTCTTCCTCAAGT-TCTGAACTTTCTATTGT 1130
|||||||||||||||||| | |||||||||||||||||||| | |||||||| || |||
Sbjct 1051 TCACTTCAGTGAAACCCTGTTAATCTTTTTTCTTCCTCAAGTGT-TGAACTTTTTACTGT 1109
Query 1131 CGCTTCCTCAGCTTGCTGGGATTGTGAAATGTCCGCGCCATCGTCTCCC-AAGGTATGAT 1189
| ||||| ||||||||||| ||||| |||||||| || ||||||||||| ||| ||||||
Sbjct 1110 CACTTCCGCAGCTTGCTGGCATTGTCAAATGTCCACGACATCGTCTCCCCAAG-TATGAT 1168
Query 1190 CCTGCTACCGGATTACTGACCGGCACAAAAGATGGGACACTTGTCAATGTTTACTTGAGG 1249
|||||||| ||| | | || || ||||||||||||||||| || || || |||||||||
Sbjct 1169 CCTGCTACGGGACTGTTAACAGGAACAAAAGATGGGACACTCGTGAACGTCTACTTGAGG 1228
Query 1250 -TTGTTTGGTCCTAAATCAGAAAAGTCTCTTTGCATCCATCTTCTCGTTTTCCAGGCTCT 1308
|| |||||| ||| ||||||||||||| || || |||||||| ||||||||||||||
Sbjct 1229 ATT-TTTGGTAGGAAAACAGAAAAGTCTCTATGTATTCATCTTCTTGTTTTCCAGGCTCT 1287
Query 1309 AGCGTGCGCCTTCTGTTTCATACTTCGACACTTTCTTGCTGGTTGGTATAAATAAATCT 1367
|| ||||| || |||||||| ||| | || ||||| ||||||||||| ||||||||||
Sbjct 1288 TGCTTGCGCATTTTGTTTCATGCTTAGGCATTTTCTAGCTGGTTGGTACAAATAAATCT 1346
> AT3G60957.1 | Symbols: | pseudogene of GPT | chr3:22533783-22535556
FORWARD LENGTH=570
Length=570
Score = 158 bits (85), Expect = 2e-37
Identities = 95/100 (95%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 770 ATGGGGCTACTTGCTGTCTTTTGTACAAACTCTATTAACATCCACGCTGGTCTGAATGGC 829
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGGTTACTTGCTGTCTTTTGTCCAAACTCTATTAACATCCACGCTGGTCTGAATGGC 60
Query 830 CTTGAAATCGGTCAAACAGTTGTTATTGCCGCTGCTATCC 869
|||||||||||||| |||||||||| |||||||||| |||
Sbjct 61 CTTGAAATCGGTCACACAGTTGTTACTGCCGCTGCTTTCC 100
Score = 141 bits (76), Expect = 2e-32
Identities = 84/88 (95%), Gaps = 0/88 (0%)
Strand=Plus/Plus
Query 993 GGTATCCTTCTTCAGTTTTTGTTGGAGACACTTACACAGTCTTCGCTGGAATGACTATGG 1052
|||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||
Sbjct 119 GGTATCCTTCTTCAGTTTTTGTTGGAGATACTTACACAGTCTTCGCTGGAACGACTGTGG 178
Query 1053 CAGTTGTTGGCATTCTGGGTCACTTCAG 1080
|||||||||| |||||||||||||||||
Sbjct 179 CAGTTGTTGGTATTCTGGGTCACTTCAG 206
> AT2G41500.1 | Symbols: LIS, EMB2776 | WD-40 repeat family protein
/ small nuclear ribonucleoprotein Prp4p-related | chr2:17304130-17307426
REVERSE LENGTH=2060
Length=2060
Score = 58.4 bits (31), Expect = 2e-07
Identities = 31/31 (100%), Gaps = 0/31 (0%)
Strand=Plus/Minus
Query 1437 TTTTTGTTGAACGAAATGGCAAAATTTTCAA 1467
|||||||||||||||||||||||||||||||
Sbjct 2038 TTTTTGTTGAACGAAATGGCAAAATTTTCAA 2008
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72338985345
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5