BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483227
Length=2002
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41500.1 | Symbols: LIS, EMB2776 | WD-40 repeat family prote... 3009 0.0
AT2G41490.1 | Symbols: GPT | UDP-glcnac-adolichol phosphate glc... 100 4e-20
> AT2G41500.1 | Symbols: LIS, EMB2776 | WD-40 repeat family protein
/ small nuclear ribonucleoprotein Prp4p-related | chr2:17304130-17307426
REVERSE LENGTH=2060
Length=2060
Score = 3009 bits (1629), Expect = 0.0
Identities = 1913/2042 (94%), Gaps = 51/2042 (2%)
Strand=Plus/Plus
Query 1 TTCTCGCTTCAATTTTCCGTTTTTGCTACCGTCGTCTCTGG--AGACTGGAGAGGAAACA 58
||||||| |||| |||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 8 TTCTCGCATCAAATTTCCGTTTTTGCTACCGTCGTCTCTGGTCAGACT-CAGAGGAAACA 66
Query 59 CGGCGCTTGAGCAACTGACAAGTCTGTTTCGTGTTTGGGGTTTTCGAAGAGAGTAACGAG 118
||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 67 CGGAGCTTGAGCAACTGACAAGACTGTTTCGTGTTTGGGGCTTTCGAAGAGAGTAACGAG 126
Query 119 ATTCGCGGATTTCGTCAATTCCTGGGTTTTCTCTAGATTGCTGTTTCGGTGGTGtttttt 178
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 127 ATTCGCGGGTTTCGTCAATTCCTGGGTTTTCTCTAGATTGCTGTTTCGGTGGTGTTTTCT 186
Query 179 ttCTGAGGATTTAAGCG-AACATGGAACCCAATAAGGAAGATAATGTTTTATTACCAGCA 237
|| |||||||||||| | |||||||||||||| ||||| |||||||||| |||| |||||
Sbjct 187 TT-TGAGGATTTAAGGGAAACATGGAACCCAACAAGGATGATAATGTTTCATTAGCAGCA 245
Query 238 ACAGCTCAAATCACAGCACCTCCAATTCTACAAGATGCCACGTCTCAGCCAGGTTTCTCT 297
||||||||||| ||||||||||| |||||||||||||| |||||| |||||||||||||
Sbjct 246 ACAGCTCAAATTTCAGCACCTCCAGTTCTACAAGATGCCTCGTCTCTGCCAGGTTTCTCT 305
Query 298 GCCATACCACCGGTGG------------TTCCCCCACCAATGGCTCCAATACCAATGATG 345
||||| ||||| |||| ||||||||||||||||||||||||| ||||||
Sbjct 306 GCCATTCCACCTGTGGTTCCTCCTTCTTTTCCCCCACCAATGGCTCCAATACCTATGATG 365
Query 346 CCACATCCTCCAGTTACCCGCCCACCTACTTTTAAGCCACCTGTTTCACAAAATGGTAGA 405
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 366 CCACATCCTCCAGTTGCCCGCCCACCTACTTTTAGGCCACCTGTTTCACAAAATGGTGGA 425
Query 406 GCGAAAACCAGTGACTCGGATTCGGAATCAGATGATGAACATTTTGAGATATCTGAGGAG 465
| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 426 GTGAAAACCAGTGACTCGGATTCGGAATCAGATGATGAACATATTGAGATATCTGAAGAG 485
Query 466 AGTAGGCAGGTCAGAGAAAGACAGGAAAAGGCATTGCAAGACTTGTTGGTAAAGCGTCGT 525
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 486 AGTAAGCAGGTCAGAGAAAGACAGGAAAAGGCATTGCAAGATTTGTTGGTAAAGCGTCGT 545
Query 526 GCTGCTGCTATGGCAGTTCCAACAAATGACAAAGCTGTTAGGGATCGCCTTAGACGACTT 585
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 546 GCTGCTGCTATGGCAGTTCCAACAAATGACAAAGCTGTTAGGGACCGACTTAGACGACTT 605
Query 586 GGGCAGCCCATTACTCTATTTGGAGAACAGGAAATGGAGAGAAGAGCTAGGTTGACTCAG 645
||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 606 GGGGAGCCCATTACTCTATTTGGAGAACAGGAAATGGAGAGACGAGCTAGGCTGACTCAG 665
Query 646 CTTTTGGCTAGGCT-TGATATGGATGGGCAACTGGATAAACTGCTTATAGCTCAAGAAGA 704
|| ||| ||||| | |||||| |||||||| ||||||||||| ||| || ||| |||||
Sbjct 666 CTGTTGACTAGG-TATGATATCAATGGGCAATTGGATAAACTGGTTAAAGATCACGAAGA 724
Query 705 AGATGTGGCTCCAAAAGAGGAAGTGGATGATGAAGTACTTGAATACCCCTTTTTTACCGA 764
||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 725 AGATGTGACTCCAAAAGAGGAAGTAGATGATGAAGTTCTTGAATACCCCTTTTTTACCGA 784
Query 765 GGGTCCAAAGGAACTTAGAGAGGCTAGAATAGAAATTGCCAAGTTTTCTGTCAAGAGAGC 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 785 GGGTCCAAAGGAACTTAGAGAGGCTAGAATAGAAATTGCCAAGTTTTCTGTCAAGAGAGC 844
Query 825 TGCTGTCAGGATTCAGCGTGCAAAGCGGCGGAGGGATGATCCAGATGAAGATATGGATGC 884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 845 TGCTGTCAGGATTCAGCGTGCAAAGCGGCGGAGGGATGATCCAGATGAAGATATGGATGC 904
Query 885 AGAGACTAAGTGGGCTTTAAAGCATGCTAAAAACATGGTCCTTGATTGCAGTAATTTTGG 944
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 905 AGAGACTAAGTGGGCTTTAAAGCATGCTAAACACATGGCCCTTGATTGCAGTAATTTTGG 964
Query 945 AGATGATCGTCCTCTTACCGGCTGCTCCTTCTCACGCGATGGAAAGATACTTGCCACATG 1004
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 965 AGATGATCGTCCTCTTACCGGCTGCTCCTTCTCACGCGATGGAAAGATACTTGCCACATG 1024
Query 1005 TTCTCTGAGTGGAGTTACTAAATTGTGGGAGATGCCTCAAGTTACAAACACGATTGCTGT 1064
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1025 TTCTCTGAGTGGAGTTACTAAATTGTGGGAGATGCCTCAAGTTACAAACACGATTGCTGT 1084
Query 1065 CTTGAAGGATCACAAAGAACGTGCTACTGATGTAGTGTTCTCCCCTGTGGATGATTGTCT 1124
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1085 CTTGAAGGATCACAAAGAACGTGCAACTGATGTAGTGTTCTCCCCAGTGGATGATTGTCT 1144
Query 1125 AGCAACTGCTTCTGCTGATCGAACTGCAAAGCTGTGGAAAACTGATGGAACACTCCTACA 1184
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1145 AGCGACTGCTTCTGCTGATCGAACTGCAAAGCTGTGGAAAACTGATGGAACACTCCTACA 1204
Query 1185 AACGTTTGAAGGTCATTTGGATCGCCTTGCACGTGTTGCTTTCCACCCATCAGGGAAATA 1244
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1205 AACGTTTGAAGGTCATTTGGATCGTCTGGCACGTGTTGCTTTCCACCCATCAGGGAAATA 1264
Query 1245 CTTGGGAACTACAAGCTTTGACAAGACGTGGAGATTGTGGGATATAAACACAGGAGCTGA 1304
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1265 CCTGGGAACTACAAGCTATGACAAGACGTGGAGATTGTGGGATATAAACACAGGAGCAGA 1324
Query 1305 ACTGCTTTTGCAAGAAGGTCATAGTCGTAGTGTCTATGGGATTGCATTTCAACAAGATGG 1364
|||||||||||||||||| ||||| || |||||||| || ||||||||||||||||||||
Sbjct 1325 ACTGCTTTTGCAAGAAGGCCATAGCCGCAGTGTCTACGGAATTGCATTTCAACAAGATGG 1384
Query 1365 AGCATTAGCAGCTTCTTCTGGGCTTGATTCACTTGCACGAGTTTGGGATCTCCGCACTGG 1424
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1385 AGCATTAGCAGCTTCTTGTGGGCTTGATTCACTCGCACGAGTTTGGGATCTCCGCACTGG 1444
Query 1425 TAGGAGTATTCTTGTCTTCCAAGGACACATCAAACCGGTAAGATTCTCAGTGAATTTCTC 1484
||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1445 TAGGAGTATTCTTGTCTTCCAAGGACACATCAAACCGGTT---TTCTCCGTGAATTTCTC 1501
Query 1485 TCCTAATGGTTATCACTTGGCATCTGGTGGTGAGGATAATCAATGCCGTATTTGGGATCT 1544
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1502 TCCTAATGGTTATCACTTGGCATCTGGTGGGGAGGATAATCAATGCCGTATTTGGGATCT 1561
Query 1545 AAGAATGAGAAAGTCATTGTACATTATACCAGCTCATGCCAACCTTGTGTCTCAAGTGAA 1604
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1562 AAGAATGAGAAAGTCATTGTACATTATACCAGCTCATGCTAACCTTGTGTCTCAAGTGAA 1621
Query 1605 GTATGAACCACAAGAAGGCTACTTTCTGGCCACTGCATCATACGACATGAAAGTCAATAT 1664
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1622 GTATGAGCCACAAGAAGGCTACTTTCTGGCCACTGCCTCATACGACATGAAAGTCAATAT 1681
Query 1665 ATGGTCAGGAAGAGATTTCTCGCTCGTTAAAAGCTTAGCAGGGCATGAGTCAAAAGTCGC 1724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1682 ATGGTCAGGAAGAGATTTCTCGCTCGTTAAAAGCTTAGCAGGGCATGAGTCAAAAGTCGC 1741
Query 1725 CTCTCTAGATATCACTGCAGATAGCTCGTGTATTGCAACTGTATCACATGATCGCACCAT 1784
||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1742 CTCTCTAGATATCACAGCAGATAGCTCGTGTATCGCTACTGTATCACATGATCGCACCAT 1801
Query 1785 CAAGCTCTGGACAAGCAGTGGAAATGATGAAGATGAAGA-GAAAGAGAAAGAAACAATGG 1843
|||||| ||||||||||||||||||||||| |||||| ||| ||||||||||||||||
Sbjct 1802 CAAGCTATGGACAAGCAGTGGAAATGATGA---TGAAGACGAA-GAGAAAGAAACAATGG 1857
Query 1844 ACATAGATCTCTAGTTTCATTTTTCATGTTTGTGCAAGaaaaaaaa------aT-TAGC- 1895
|||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1858 ACATAGATCTCTAGTTTCATTTTTCATGTTTGTGCAAGAAAAAAAACTTGGGATCTAGGG 1917
Query 1896 -TT--G---TTAG------AGAGAA--TCATTAAACGGTATT-GATATCTTGTCGGGAAT 1940
|| | |||| |||||| |||||||| ||||| ||| |||||||||||||
Sbjct 1918 ATTTCGAGATTAGCTTGTTAGAGAAACTCATTAAATTGTATTTGATCTCTTGTCGGGAAT 1977
Query 1941 TATAGAAACTCAGGATGATGATACATTGTCTTTGAAAATTTTGCCATTTCGTTCAACAAA 2000
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1978 TATAGAAACTCAGGATGCTGATACATTGTCTT-GAAAATTTTGCCATTTCGTTCAACAAA 2036
Query 2001 AA 2002
||
Sbjct 2037 AA 2038
> AT2G41490.1 | Symbols: GPT | UDP-glcnac-adolichol phosphate glcnac-1-p-transferase
| chr2:17301695-17304211 FORWARD LENGTH=1544
Length=1544
Score = 100 bits (54), Expect = 4e-20
Identities = 59/61 (97%), Gaps = 1/61 (2%)
Strand=Plus/Minus
Query 1942 ATAGAAACTCAGGATGATGATACATTGTCTTTGAAAATTTTGCCATTTCGTTCAACAAAA 2001
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1544 ATAGAAACTCAGGATGCTGATACATTGTC-TTGAAAATTTTGCCATTTCGTTCAACAAAA 1486
Query 2002 A 2002
|
Sbjct 1485 A 1485
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99196276920
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5