BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg483228 Length=1911 Score E Sequences producing significant alignments: (Bits) Value AT2G41510.1 | Symbols: ATCKX1, CKX1 | cytokinin oxidase/dehydro... 2963 0.0 > AT2G41510.1 | Symbols: ATCKX1, CKX1 | cytokinin oxidase/dehydrogenase 1 | chr2:17314532-17317003 FORWARD LENGTH=1964 Length=1964 Score = 2963 bits (1604), Expect = 0.0 Identities = 1819/1921 (95%), Gaps = 21/1921 (1%) Strand=Plus/Plus Query 1 AGTACTCTTAACCTCAACTTTACCTCTACTTCCCTCATACCATTCCG-C-C----TCTTT 54 |||||||| |||||||| |||||||||||||| || ||||||||||| | | ||||| Sbjct 11 AGTACTCTAAACCTCAAGTTTACCTCTACTTCTCTTATACCATTCCGCCTCTTATTCTTT 70 Query 55 GCAATTTCTCTCAAGAAAGTAGAAATGGGATTGACCTCATCCTTACGGTTCCATAGACGA 114 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | Sbjct 71 GCAATTTCTCTCAACAAAGTAGAAATGGGATTGACCTCATCCTTACGGTTCCATAGACAA 130 Query 115 AACAACAAGACTTTCCTCAGAATCTTCATGATCTTGGTTCTAAGCTGTATACCAGGTAGA 174 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 131 AACAACAAGACTTTCCTCGGAATCTTCATGATCTTGGTTCTAAGCTGTATACCAGGTAGA 190 Query 175 ACCAATCTTTGTTCCAATCATTCTGTTAGTACCCCGAAAGAATTACCTCCTTCAAATCCT 234 ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| Sbjct 191 ACCAATCTTTGTTCCAATCATTCTGTTAGTACCCCAAAAGAATTACCTTCTTCAAATCCT 250 Query 235 CCAGATATTCGTTCTTCCTTAGTTTCACTAGATTTGGAGGGTTGCATAAGCTTTGACGAT 294 ||||||||||||| || ||||||||||||||||||||||||| |||||||| |||||| Sbjct 251 TCAGATATTCGTTCCTCATTAGTTTCACTAGATTTGGAGGGTTATATAAGCTTCGACGAT 310 Query 295 GTCCACAATGTGGCCAAGGACTTTGGCAACAGATACCAGTTACCACCTTTGGCAATTCTA 354 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 311 GTCCACAATGTGGCCAAGGACTTTGGCAACAGATACCAGTTACCACCTTTGGCAATTCTA 370 Query 355 CATCCAAGGTCTGTTTCTGATATTTCATCGATGATGAAGCATATAGTACATCTGGGCTCC 414 ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 371 CATCCAAGGTCAGTTTTTGATATTTCATCGATGATGAAGCATATAGTACATCTGGGCTCC 430 Query 415 ACCTCAAATCTCACAGTAGCAGCCAGAGGCCATGGTCACTCGCTTCAAGGACAATCTCTA 474 ||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||| Sbjct 431 ACCTCAAATCTTACAGTAGCAGCTAGAGGCCATGGTCACTCGCTTCAAGGACAAGCTCTA 490 Query 475 GCTCATCAAGGTGTTGTCATCAAAATGGAGTCACTTAGAAGTCCTGATATCAGGATTTAC 534 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 491 GCTCATCAAGGTGTTGTCATCAAAATGGAGTCACTTCGAAGTCCTGATATCAGGATTTAT 550 Query 535 AAGGGGAAGCAACCGTATGTTGATGTCTCAGGTGGTGAACTATGGATCAACATTCTACGG 594 |||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||| Sbjct 551 AAGGGGAAGCAACCATATGTTGATGTCTCAGGTGGTGAAATATGGATAAACATTCTACGC 610 Query 595 GAGACTCTAAAATACGGTCTTTCACCAAAGTCCTGGACAGACTACCTTCATCTGACCGTT 654 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 611 GAGACTCTAAAATACGGTCTTTCACCAAAGTCCTGGACAGACTACCTTCATTTGACCGTT 670 Query 655 GGAGGTACTCTATCTAACGCTGGAATCAGTGGTCAAGCCTTCAAGCATGGACCCCAAATC 714 |||||||| |||||||| ||||||||||| |||||||| ||||||||||||||||||||| Sbjct 671 GGAGGTACACTATCTAATGCTGGAATCAGCGGTCAAGCATTCAAGCATGGACCCCAAATC 730 Query 715 AACAACGTCTACCAGCTAGAGATTGTTACAGGGAAAGGAGAAGTCGTAACCTGTTCTGAG 774 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 731 AACAACGTCTACCAGCTAGAGATTGTTACAGGGAAAGGAGAAGTCGTAACCTGTTCTGAG 790 Query 775 AAGAAGAATTCTGAACTTTTCTTCAGTGTTCTTGGCGGGCTTGGACAGTTTGGCATAATC 834 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 791 AAGCGGAATTCTGAACTTTTCTTCAGTGTTCTTGGCGGGCTTGGACAGTTTGGCATAATC 850 Query 835 ACTCGGGCACGGATCTCTCTTGAACCAGCACCGCAAATGGTTAAATGGATCAGGGTACTC 894 || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 851 ACCCGGGCACGGATCTCTCTTGAACCAGCACCGCATATGGTTAAATGGATCAGGGTACTC 910 Query 895 TACTCTGATTTTTCTGCATTTTCAAGGGACCAAGAACATCTGATTTCGAAGGAGAAAACT 954 |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 911 TACTCTGACTTTTCTGCATTTTCAAGGGACCAAGAATATCTGATTTCGAAGGAGAAAACT 970 Query 955 TTTGATTACGTTGAAGGATTTGTGATAATCAATAGAACAGACCTCCTCAATAATTGGAGA 1014 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || Sbjct 971 TTTGATTACGTTGAAGGATTTGTGATAATCAATAGAACAGACCTTCTCAATAATTGGCGA 1030 Query 1015 TCGTCATTCAGTCCCAACGATTCCACACAGGCAAGCAGATTCAAGTCAGATGGAAAAACT 1074 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1031 TCGTCATTCAGTCCCAACGATTCCACACAGGCAAGCAGATTCAAGTCAGATGGGAAAACT 1090 Query 1075 CTTTATTGCCTAGAAGTGGTCAAATATTTCAACCCAGAAGAAGCTAACTCTATGCATCAG 1134 |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| Sbjct 1091 CTTTATTGCCTAGAAGTGGTCAAATATTTCAACCCAGAAGAAGCTAGCTCTATGGATCAG 1150 Query 1135 GAAACCGGCAAGTTACTTTCAGAGTTAAATTATATTCCATCCACTTTGTTTTCATCTGAA 1194 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1151 GAAACTGGCAAGTTACTTTCAGAGTTAAATTATATTCCATCCACTTTGTTTTCATCTGAA 1210 Query 1195 GTGCCATATATCGAGTTTCTGGATCGCGTGCATATCGCAGAGAGAAAACTGAGAGCAAAG 1254 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1211 GTGCCATATATCGAGTTTCTGGATCGCGTGCATATCGCAGAGAGAAAACTAAGAGCAAAG 1270 Query 1255 GGTTTATGGGAGGTTCCACATCCCTGGCTGAATCTCCTGATTCCCAAGCGCAACATATTT 1314 |||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||| Sbjct 1271 GGTTTATGGGAGGTTCCACATCCCTGGCTGAATCTCCTGATTCCTAAGAGCAGCATATAC 1330 Query 1315 CAATTTGCTACAGAAGTTTTCAACAACATTCTCACAAGCAACAATAACGGCCCTATCCTT 1374 |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| Sbjct 1331 CAATTTGCTACAGAAGTTTTCAACAACATTCTCACAAGCAACAACAACGGTCCTATCCTT 1390 Query 1375 ATATATCCAGTCAATCAATCCAAGTGGAACAAACATACGTCTTTGATAACTCCAAATGAA 1434 || |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| Sbjct 1391 ATTTATCCAGTCAATCAATCCAAGTGGAAGAAACATACATCTTTGATAACTCCAAATGAA 1450 Query 1435 GATATCTTCTATCTCGTGGCCTTTCTCCCCTCTGCAGTGCCAAATTCCTCAGGGAAAAAC 1494 ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1451 GATATATTCTATCTCGTAGCCTTTCTCCCCTCTGCAGTGCCAAATTCCTCAGGGAAAAAC 1510 Query 1495 GATTTAGAGCACCTTTTGAAACAAAACCAAAGAGTTATTAGCTTCTGTGGAGCAGCAAAC 1554 ||| ||||| |||||||||||||||||||||||||||| | |||||| | |||||||||| Sbjct 1511 GATCTAGAGTACCTTTTGAAACAAAACCAAAGAGTTATGAACTTCTGCGCAGCAGCAAAC 1570 Query 1555 CTCAACGTGAAGCAGTATTTGCCTCATTATGAAACCCAACAAGAGTGGAAATCACACTTT 1614 ||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||| Sbjct 1571 CTCAACGTGAAGCAGTATTTGCCCCATTATGAAACTCAAAAAGAGTGGAAATCACACTTT 1630 Query 1615 GGCAATAGATGGGAAACATTTGCACAGAGGAAACATGCCTACGACCCTCAAGGGATTCTA 1674 ||||| ||||||||||||||||||||||||||||| ||||||||||||| || ||||||| Sbjct 1631 GGCAAAAGATGGGAAACATTTGCACAGAGGAAACAAGCCTACGACCCTCTAGCGATTCTA 1690 Query 1675 GCCCCTGGGCAGAGAATATTCCAAAAGACAACAAGACAATTATCTCCCATACAACTCTCA 1734 || ||||| || ||||||||||||||||||||| || ||||||||||||| |||||| || Sbjct 1691 GCACCTGGCCAAAGAATATTCCAAAAGACAACAGGAAAATTATCTCCCATCCAACTCGCA 1750 Query 1735 AAGTCAAAGGCAACAGGAAGTCCTCAAAGGTACCACTAGAGAGAGCATCAATATACTGCC 1794 ||||||||||||||||||||||||||||||||||| || | |||||||| ||||| Sbjct 1751 AAGTCAAAGGCAACAGGAAGTCCTCAAAGGTACCATTAC-G----CATCAATA--CTGCC 1803 Query 1795 AAAACCTAGAACTGTATAAAAGTTTCCTGTGTCC-T--T-GTAACGGCTCAGGCTAGGCA 1850 ||||||||||||||||||||||||||||||||| | | ||||| |||||||||||||| Sbjct 1804 GAAACCTAGAACTGTATAAAAGTTTCCTGTGTCCGTCCTTGTAACCGCTCAGGCTAGGCA 1863 Query 1851 GCAAGAGAGTGAAAAAATTCTTTCttttttttCGTTTCTTTTGGTGAACAACAAATTTTA 1910 |||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||| Sbjct 1864 GCAAGAAAGTGAAAAA-TTCTTTCTTTTTT---GTTTCTTTTGGTGAACAACAAATTTTA 1919 Query 1911 C 1911 | Sbjct 1920 C 1920 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 94628027325 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5