BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483228
Length=1911
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41510.1 | Symbols: ATCKX1, CKX1 | cytokinin oxidase/dehydro... 2963 0.0
> AT2G41510.1 | Symbols: ATCKX1, CKX1 | cytokinin oxidase/dehydrogenase
1 | chr2:17314532-17317003 FORWARD LENGTH=1964
Length=1964
Score = 2963 bits (1604), Expect = 0.0
Identities = 1819/1921 (95%), Gaps = 21/1921 (1%)
Strand=Plus/Plus
Query 1 AGTACTCTTAACCTCAACTTTACCTCTACTTCCCTCATACCATTCCG-C-C----TCTTT 54
|||||||| |||||||| |||||||||||||| || ||||||||||| | | |||||
Sbjct 11 AGTACTCTAAACCTCAAGTTTACCTCTACTTCTCTTATACCATTCCGCCTCTTATTCTTT 70
Query 55 GCAATTTCTCTCAAGAAAGTAGAAATGGGATTGACCTCATCCTTACGGTTCCATAGACGA 114
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 71 GCAATTTCTCTCAACAAAGTAGAAATGGGATTGACCTCATCCTTACGGTTCCATAGACAA 130
Query 115 AACAACAAGACTTTCCTCAGAATCTTCATGATCTTGGTTCTAAGCTGTATACCAGGTAGA 174
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 131 AACAACAAGACTTTCCTCGGAATCTTCATGATCTTGGTTCTAAGCTGTATACCAGGTAGA 190
Query 175 ACCAATCTTTGTTCCAATCATTCTGTTAGTACCCCGAAAGAATTACCTCCTTCAAATCCT 234
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 191 ACCAATCTTTGTTCCAATCATTCTGTTAGTACCCCAAAAGAATTACCTTCTTCAAATCCT 250
Query 235 CCAGATATTCGTTCTTCCTTAGTTTCACTAGATTTGGAGGGTTGCATAAGCTTTGACGAT 294
||||||||||||| || ||||||||||||||||||||||||| |||||||| ||||||
Sbjct 251 TCAGATATTCGTTCCTCATTAGTTTCACTAGATTTGGAGGGTTATATAAGCTTCGACGAT 310
Query 295 GTCCACAATGTGGCCAAGGACTTTGGCAACAGATACCAGTTACCACCTTTGGCAATTCTA 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 311 GTCCACAATGTGGCCAAGGACTTTGGCAACAGATACCAGTTACCACCTTTGGCAATTCTA 370
Query 355 CATCCAAGGTCTGTTTCTGATATTTCATCGATGATGAAGCATATAGTACATCTGGGCTCC 414
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 CATCCAAGGTCAGTTTTTGATATTTCATCGATGATGAAGCATATAGTACATCTGGGCTCC 430
Query 415 ACCTCAAATCTCACAGTAGCAGCCAGAGGCCATGGTCACTCGCTTCAAGGACAATCTCTA 474
||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 431 ACCTCAAATCTTACAGTAGCAGCTAGAGGCCATGGTCACTCGCTTCAAGGACAAGCTCTA 490
Query 475 GCTCATCAAGGTGTTGTCATCAAAATGGAGTCACTTAGAAGTCCTGATATCAGGATTTAC 534
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 491 GCTCATCAAGGTGTTGTCATCAAAATGGAGTCACTTCGAAGTCCTGATATCAGGATTTAT 550
Query 535 AAGGGGAAGCAACCGTATGTTGATGTCTCAGGTGGTGAACTATGGATCAACATTCTACGG 594
|||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 551 AAGGGGAAGCAACCATATGTTGATGTCTCAGGTGGTGAAATATGGATAAACATTCTACGC 610
Query 595 GAGACTCTAAAATACGGTCTTTCACCAAAGTCCTGGACAGACTACCTTCATCTGACCGTT 654
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 611 GAGACTCTAAAATACGGTCTTTCACCAAAGTCCTGGACAGACTACCTTCATTTGACCGTT 670
Query 655 GGAGGTACTCTATCTAACGCTGGAATCAGTGGTCAAGCCTTCAAGCATGGACCCCAAATC 714
|||||||| |||||||| ||||||||||| |||||||| |||||||||||||||||||||
Sbjct 671 GGAGGTACACTATCTAATGCTGGAATCAGCGGTCAAGCATTCAAGCATGGACCCCAAATC 730
Query 715 AACAACGTCTACCAGCTAGAGATTGTTACAGGGAAAGGAGAAGTCGTAACCTGTTCTGAG 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 731 AACAACGTCTACCAGCTAGAGATTGTTACAGGGAAAGGAGAAGTCGTAACCTGTTCTGAG 790
Query 775 AAGAAGAATTCTGAACTTTTCTTCAGTGTTCTTGGCGGGCTTGGACAGTTTGGCATAATC 834
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 791 AAGCGGAATTCTGAACTTTTCTTCAGTGTTCTTGGCGGGCTTGGACAGTTTGGCATAATC 850
Query 835 ACTCGGGCACGGATCTCTCTTGAACCAGCACCGCAAATGGTTAAATGGATCAGGGTACTC 894
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 851 ACCCGGGCACGGATCTCTCTTGAACCAGCACCGCATATGGTTAAATGGATCAGGGTACTC 910
Query 895 TACTCTGATTTTTCTGCATTTTCAAGGGACCAAGAACATCTGATTTCGAAGGAGAAAACT 954
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 911 TACTCTGACTTTTCTGCATTTTCAAGGGACCAAGAATATCTGATTTCGAAGGAGAAAACT 970
Query 955 TTTGATTACGTTGAAGGATTTGTGATAATCAATAGAACAGACCTCCTCAATAATTGGAGA 1014
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 971 TTTGATTACGTTGAAGGATTTGTGATAATCAATAGAACAGACCTTCTCAATAATTGGCGA 1030
Query 1015 TCGTCATTCAGTCCCAACGATTCCACACAGGCAAGCAGATTCAAGTCAGATGGAAAAACT 1074
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1031 TCGTCATTCAGTCCCAACGATTCCACACAGGCAAGCAGATTCAAGTCAGATGGGAAAACT 1090
Query 1075 CTTTATTGCCTAGAAGTGGTCAAATATTTCAACCCAGAAGAAGCTAACTCTATGCATCAG 1134
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 1091 CTTTATTGCCTAGAAGTGGTCAAATATTTCAACCCAGAAGAAGCTAGCTCTATGGATCAG 1150
Query 1135 GAAACCGGCAAGTTACTTTCAGAGTTAAATTATATTCCATCCACTTTGTTTTCATCTGAA 1194
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1151 GAAACTGGCAAGTTACTTTCAGAGTTAAATTATATTCCATCCACTTTGTTTTCATCTGAA 1210
Query 1195 GTGCCATATATCGAGTTTCTGGATCGCGTGCATATCGCAGAGAGAAAACTGAGAGCAAAG 1254
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1211 GTGCCATATATCGAGTTTCTGGATCGCGTGCATATCGCAGAGAGAAAACTAAGAGCAAAG 1270
Query 1255 GGTTTATGGGAGGTTCCACATCCCTGGCTGAATCTCCTGATTCCCAAGCGCAACATATTT 1314
|||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||
Sbjct 1271 GGTTTATGGGAGGTTCCACATCCCTGGCTGAATCTCCTGATTCCTAAGAGCAGCATATAC 1330
Query 1315 CAATTTGCTACAGAAGTTTTCAACAACATTCTCACAAGCAACAATAACGGCCCTATCCTT 1374
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1331 CAATTTGCTACAGAAGTTTTCAACAACATTCTCACAAGCAACAACAACGGTCCTATCCTT 1390
Query 1375 ATATATCCAGTCAATCAATCCAAGTGGAACAAACATACGTCTTTGATAACTCCAAATGAA 1434
|| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1391 ATTTATCCAGTCAATCAATCCAAGTGGAAGAAACATACATCTTTGATAACTCCAAATGAA 1450
Query 1435 GATATCTTCTATCTCGTGGCCTTTCTCCCCTCTGCAGTGCCAAATTCCTCAGGGAAAAAC 1494
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1451 GATATATTCTATCTCGTAGCCTTTCTCCCCTCTGCAGTGCCAAATTCCTCAGGGAAAAAC 1510
Query 1495 GATTTAGAGCACCTTTTGAAACAAAACCAAAGAGTTATTAGCTTCTGTGGAGCAGCAAAC 1554
||| ||||| |||||||||||||||||||||||||||| | |||||| | ||||||||||
Sbjct 1511 GATCTAGAGTACCTTTTGAAACAAAACCAAAGAGTTATGAACTTCTGCGCAGCAGCAAAC 1570
Query 1555 CTCAACGTGAAGCAGTATTTGCCTCATTATGAAACCCAACAAGAGTGGAAATCACACTTT 1614
||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||
Sbjct 1571 CTCAACGTGAAGCAGTATTTGCCCCATTATGAAACTCAAAAAGAGTGGAAATCACACTTT 1630
Query 1615 GGCAATAGATGGGAAACATTTGCACAGAGGAAACATGCCTACGACCCTCAAGGGATTCTA 1674
||||| ||||||||||||||||||||||||||||| ||||||||||||| || |||||||
Sbjct 1631 GGCAAAAGATGGGAAACATTTGCACAGAGGAAACAAGCCTACGACCCTCTAGCGATTCTA 1690
Query 1675 GCCCCTGGGCAGAGAATATTCCAAAAGACAACAAGACAATTATCTCCCATACAACTCTCA 1734
|| ||||| || ||||||||||||||||||||| || ||||||||||||| |||||| ||
Sbjct 1691 GCACCTGGCCAAAGAATATTCCAAAAGACAACAGGAAAATTATCTCCCATCCAACTCGCA 1750
Query 1735 AAGTCAAAGGCAACAGGAAGTCCTCAAAGGTACCACTAGAGAGAGCATCAATATACTGCC 1794
||||||||||||||||||||||||||||||||||| || | |||||||| |||||
Sbjct 1751 AAGTCAAAGGCAACAGGAAGTCCTCAAAGGTACCATTAC-G----CATCAATA--CTGCC 1803
Query 1795 AAAACCTAGAACTGTATAAAAGTTTCCTGTGTCC-T--T-GTAACGGCTCAGGCTAGGCA 1850
||||||||||||||||||||||||||||||||| | | ||||| ||||||||||||||
Sbjct 1804 GAAACCTAGAACTGTATAAAAGTTTCCTGTGTCCGTCCTTGTAACCGCTCAGGCTAGGCA 1863
Query 1851 GCAAGAGAGTGAAAAAATTCTTTCttttttttCGTTTCTTTTGGTGAACAACAAATTTTA 1910
|||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 1864 GCAAGAAAGTGAAAAA-TTCTTTCTTTTTT---GTTTCTTTTGGTGAACAACAAATTTTA 1919
Query 1911 C 1911
|
Sbjct 1920 C 1920
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94628027325
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5