BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483232
Length=2069
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41540.1 | Symbols: GPDHC1 | 6-phosphogluconate dehydrogenas... 2614 0.0
> AT2G41540.1 | Symbols: GPDHC1 | 6-phosphogluconate dehydrogenase
family protein | chr2:17326170-17328902 FORWARD LENGTH=1849
Length=1849
Score = 2614 bits (1415), Expect = 0.0
Identities = 1570/1644 (95%), Gaps = 13/1644 (1%)
Strand=Plus/Plus
Query 434 GAAGAAGGAATGGTGGGAAGCATTGAGGCCAAA-AGCCTGCAATCAAATGGGTCTGTTCA 492
|||||||||||||||||||||||||||| |||| || ||||||||||| |||||||||||
Sbjct 204 GAAGAAGGAATGGTGGGAAGCATTGAGG-CAAAGAGTCTGCAATCAAACGGGTCTGTTCA 262
Query 493 TCATAATGGTCTTAATTTGGAGGAGAAACTTGACGAATTTCGTCGACTTTTGGGGAAATC 552
||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 263 TCATATTGGTCTTAATTTGGAGGAGAAACTTGATGAATTTCGTCGTCTTTTGGGGAAATC 322
Query 553 TGACAAAGATCCGCTAAGGATTGTAAGTGTTGGTGCTGGTGCTTGGGGGAGTGTTTTTGC 612
|| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 323 AGAAAAAGATCCGTTAAGGATTGTAAGTGTTGGTGCTGGTGCTTGGGGAAGTGTTTTTGC 382
Query 613 AGCACTTCTTCAAGAAAGCTATGGAAGTTTCAGGGATAAGTTTCAGATCAGGATATGGAG 672
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 383 AGCACTTCTTCAAGAAAGCTATGGAGGTTTCAGGGATAAGTTTCAGATCAGGATATGGAG 442
Query 673 AAGAGCTGGGAGAGCTGTTGATAGAGAAACTGCAGAACATTTGTTTGAAGTGATCAATTC 732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 443 AAGAGCTGGGAGAGCTGTTGATAGAGAAACTGCAGAACATTTGTTTGAAGTGATCAATTC 502
Query 733 AAGGGAAGATATCTTGAGGAGACTGATAAGACGCTGCGCTTATCTGAAATATGTTGAGGC 792
|||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||
Sbjct 503 AAGGGAAGATATCTTGAGGAGATTGATAAGACGCTGTGCTTATCTGAAATATGTCGAGGC 562
Query 793 AAGGCTCGGTGATAGGACGCTCTATGCTGATGAGATTTTGAAAGACGGGTTTTGTCTTAA 852
|||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 563 AAGGCTTGGTGATAGGACACTCTATGCTGATGAGATATTGAAAGACGGGTTTTGTCTTAA 622
Query 853 CATGGTTGACACGCCGCTTTGTCCTCTCAAGGTTGTGACAAATCTGCAAGAAGCAGTGTG 912
||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 623 CATGGTTGATACGCCGCTTTGTCCTCTTAAGGTTGTGACAAATCTGCAAGAAGCTGTGTG 682
Query 913 GGATGCTGATATTGTTGTTAATGGATTGCCTTCAACAGAAACACGTGAAGTGTTTGAAGA 972
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 683 GGATGCTGATATTGTTGTTAATGGATTGCCTTCAACTGAAACACGTGAAGTGTTTGAAGA 742
Query 973 GATTAGTAAGTATTGGAAAGAGAGAATAACGGTTCCGATTATTATCTCTCTGTCAAAGGG 1032
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 743 GATTAGTAAGTATTGGAAAGAGAGAATAACGGTTCCGATTATTATCTCTCTGTCAAAGGG 802
Query 1033 TATTGAAACTGCTCTTGAACCAGTTCCACATATCATAACTCCAACAAAGATGATTCATCA 1092
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 803 TATTGAAACTGCTCTTGAACCAGTTCCACATATCATAACTCCAACAAAGATGATTCATCA 862
Query 1093 AGCAACTGGTGTGCCGATTGACAATGTCCTGTATCTTGGTGGACCGAACATTGCTGCTGA 1152
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 863 AGCAACTGGTGTGCCGATTGACAATGTCCTGTATCTTGGTGGACCAAACATTGCTGCTGA 922
Query 1153 AATTTACAACAAGGAATATGCCAATGCTAGAATCTGCGGAGCTGCTAAATGGAGGAAGCC 1212
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 923 AATTTACAACAAGGAATATGCCAATGCTAGAATCTGTGGAGCTGCTAAATGGAGGAAGCC 982
Query 1213 ACTAGCTAAGTTCTTAAGACAACCTCATTTCATTGTTTGGGACAACAGTGATCTTGTGAC 1272
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 983 ACTAGCTAAGTTCTTAAGACAACCTCATTTCATTGTTTGGGACAATAGTGATCTTGTGAC 1042
Query 1273 ACATGAAGTAATGGGAGGTCTCAAGAATGTCTACGCCATTGGAGCTGGAATGGTAGCGGC 1332
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1043 ACATGAAGTAATGGGAGGTCTCAAGAATGTCTACGCCATTGGAGCTGGTATGGTAGCGGC 1102
Query 1333 GCTCACTAAAGAGAGCGCTACAAGCAAGTCGGTGTATTTTGCTCATTGTACATCTGAGAT 1392
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1103 GCTCACTAACGAGAGCGCTACAAGCAAGTCGGTGTATTTTGCTCATTGTACATCTGAGAT 1162
Query 1393 GATATTTATAACTCATTTACTAGCAGAAGAGCCTGAGAAACTTGCAGGGCCTTTGCTAGC 1452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1163 GATATTTATAACTCATTTACTAGCAGAAGAGCCTGAGAAACTTGCAGGGCCTTTGCTAGC 1222
Query 1453 TGACACTTATGTGACGTTATTAAAAGGGCGTAATGCGTGGTACGGGCAAATGCTGGCAAA 1512
||||||||||||||| ||||||||||| |||||||| |||||||| ||||||||||||||
Sbjct 1223 TGACACTTATGTGACCTTATTAAAAGGACGTAATGCATGGTACGGTCAAATGCTGGCAAA 1282
Query 1513 GGGGGAAATAAATAGAGACATGGGTGATAGCATAAGCGGCAAGGGAATGATTCAGGGTGT 1572
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1283 GGGTGAAATAAATAGAGACATGGGTGATAGCATAAGCGGCAAGGGAATGATTCAGGGTGT 1342
Query 1573 TTCTGCTGTGGGAGCATTTTACCAATTGCTTAGTCAGTCAAGCTTAAGTATATTGCCCTC 1632
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1343 TTCTGCAGTGGGAGCATTTTACCAATTGCTTAGTCAATCAAGCTTAAGTATATTGCCCTC 1402
Query 1633 TGGAGAGAAGAAACTTGTAGCCCCGGTAGAATCATGTCCTATTTTGAAGACACTTTACAA 1692
|| ||||||||||| |||||| ||||| ||||||||||||||||| ||||||||||||||
Sbjct 1403 TGAAGAGAAGAAACCTGTAGCTCCGGTCGAATCATGTCCTATTTTAAAGACACTTTACAA 1462
Query 1693 GATACTCATCACAAGAGAACAATCAACACAAGCTATTCTGCAAGCGTTAAGGGACGAAAC 1752
||||||||||||||||||||||||||| || || ||||||||||| |||||||| || ||
Sbjct 1463 GATACTCATCACAAGAGAACAATCAACTCAGGCCATTCTGCAAGCATTAAGGGATGAGAC 1522
Query 1753 ATTGAACGATCCAAGAGACCGTATTGAGATTGCACAGAGCCATGCATTCTACAGGCCTTC 1812
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1523 ATTGAACGATCCCAGAGACCGTATTGAGATTGCACAGAGCCATGCATTCTACAGGCCTTC 1582
Query 1813 CCTTCTTGGTCAGCCTTGATTAGTCAGTCATGGCTTTTATAAGAGATACAACATAAATTA 1872
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1583 CCTTCTTGGTCAGCCTTGATTAGTCAGTCATGGCTTTTATAAGAGATTCAACATAAATTA 1642
Query 1873 CTTGTGCAAGCTGCAGATGCTTCATT-AAAACATTATAGCTTTAATTTGAAACATTATAG 1931
||| |||||||||||||||||||||| ||||||||||||||||||| ||| || |
Sbjct 1643 CTTCTGCAAGCTGCAGATGCTTCATTCAAAACATTATAGCTTTAATGGGAAGGGGTA--G 1700
Query 1932 TTTCAAATCTGTCATAACTTGAAATGGATTCTTTGTTTAGTAC-CTGAGTCAATGCAATC 1990
||||| |||||||||||||| |||||||||||| ||| ||| | ||||||||||||||||
Sbjct 1701 TTTCACATCTGTCATAACTTAAAATGGATTCTT-GTTAAGT-CTCTGAGTCAATGCAATC 1758
Query 1991 CTTGTA-T----CATTTTCTTTATGATCAATGAGAGCTTTATTTGCTCAAACAATTTTAC 2045
||||| | |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1759 TTTGTACTGTATCATTTTCTTTATGATCAATGAGAGCTTTATTTGCTCCAACAATTTTAG 1818
Query 2046 TTGAAGAAAGAAAACACACATTTT 2069
| ||||||||||||||| |||||
Sbjct 1819 TAAAAGAAAGAAAACACAGATTTT 1842
Score = 215 bits (116), Expect = 2e-54
Identities = 174/200 (87%), Gaps = 11/200 (6%)
Strand=Plus/Plus
Query 71 TTTTGATGATTCCC-AAATCTTTCTCATGCGTTTTTTACTTTCTTGATTTGGCAATTCTC 129
||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 5 TTTCGATGATTCCCAAAATCTTTCTCATGCGTTTTTTACTTTCTTGATTTGGCAATCCTC 64
Query 130 ATGAGCTGATTT-GATATCTTACTTCTTTATGGTTGCCGACACGAAAGTCTTCTTTTGGT 188
|||||||||||| ||| | | |||||||||||||||||||||||||| | ||
Sbjct 65 ATGAGCTGATTTTGAT-T-T--CTTCTTTATGGTTGCCGACACGAAAGAAGAAGCTAGG- 119
Query 189 AGATGAA-CAACTCAAAATTTGTTTGGTGAGAAAAATCAACCAAGAAAATCTTGTTATT- 246
| | || ||||||||| |||||||||||||||||||||||||||||||| ||| |||
Sbjct 120 ACACAAAACAACTCAAATTTTGTTTGGTGAGAAAAATCAACCAAGAAAATATTG--ATTC 177
Query 247 TTTTGGAGCAAGGAGTTGGT 266
||||||||||||||||||||
Sbjct 178 TTTTGGAGCAAGGAGTTGGT 197
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102559713435
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5