BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483235
Length=1768
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41550.1 | Symbols: | Rho termination factor | chr2:1732897... 2394 0.0
> AT2G41550.1 | Symbols: | Rho termination factor | chr2:17328970-17331173
REVERSE LENGTH=1786
Length=1786
Score = 2394 bits (1296), Expect = 0.0
Identities = 1641/1800 (91%), Gaps = 54/1800 (3%)
Strand=Plus/Plus
Query 1 GTAGCATCCCCGTTCACCGTTTAAACCGACctctttctctctctctacactctactctAA 60
|||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 9 GTAGCAAACCCGTTCACCGTTTGAACCGACCTCTTTCTCTCTCTCTACACTCTACTCTAA 68
Query 61 ATATTGCAGAGTGTGTTGTTCGTCGCTTTCACTGCCAGCC-TTTGTTTTCTCTCTCTCAC 119
||| |||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 69 ATACTGCAGAGTGTTTTGTTCGTCGCTTTCACTGCCAGCCTTTTTTTTTCTCTCTCTCAC 128
Query 120 TAAATTCTCTCGCCGACCTTCTTCAAACCCTAGAAAAACGCTTAATTTCTGGAAGATCGA 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 129 TAAATTCTCTCGCCGACCTTCTTCAAACCCTAGAAAAACGCTTAATTTCTGGAAGATCCA 188
Query 180 TCGACGAAGCTCTCTCTTCTTACCCGGTACGGATGAATTTAGCGGTTTATCGTTGTGAGT 239
||||||||| | || | | ||| |||||||| | || ||||||| ||||||
Sbjct 189 TCGACGAAG------C-TC--A--C--AACGAATGAATTTTGAGGCTTATCGTAGTGAGT 235
Query 240 GACCACCATGGATGATGAAGAAGATCTCTGGGGTCCGCCACGAG---TTGT-G--CAGCA 293
|||||||||||||||||| || |||||||||||||||||||||| |||| | |||
Sbjct 236 GACCACCATGGATGATGATGATGATCTCTGGGGTCCGCCACGAGTTTTTGTAGTTGTGCA 295
Query 294 AGACGATACTTTTCGTAAGCAAACCCTGCGTCGTTGTGAATTTTGGTTTGATTGT-AGAA 352
||||||||| |||||||| || ||| | |||||||||||||||||||| |||| | ||||
Sbjct 296 AGACGATACCTTTCGTAAACAGACCGTACGTCGTTGTGAATTTTGGTTCGATT-TCAGAA 354
Query 353 CAGATGTGCTCGAAGAAAATTTCCAGAACGAAAAGTTTTGTGAGCTAGTGTGGAGGATAT 412
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 355 CAGATGTGCTCGAAGAAAATTTCCAGAACGAAAAGTATTGTGAGCTAGTTTGGAGGATAT 414
Query 413 TGACCGAGAAGAAGAAGAAGCAAGTTGCTGCAATTGCTGAGCTTGAGAGGGTTTCGGTTT 472
||| | || ||||||||| ||||||| ||| |||||||||||||||||||||||| ||||
Sbjct 415 TGA-C-AG-AGAAGAAGAGGCAAGTTACTGAAATTGCTGAGCTTGAGAGGGTTTCAGTTT 471
Query 473 C----TCTTCAAAATAATGATACGGCTTCCTCTGAGAGTGGTGGTGACTTGCATGAGATA 528
| || | || ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 472 CAGTATCGGCTCAA-AATGATACGGCTTCCTCTGGGAGTGGTGGTGACTTGCATGAGATA 530
Query 529 GACTCTTCTGATTCTGATAAAACTCTCAGTGCTACTCTTCCAGATTCTGATTCAAGTTCT 588
|||||||||||||||||||| ||||||||| |||||||||||||||||||| | ||||||
Sbjct 531 GACTCTTCTGATTCTGATAAGACTCTCAGTACTACTCTTCCAGATTCTGATACTAGTTCT 590
Query 589 GCTAAATTGCCTCTTTATGACGATGATAACACTTCTAGTAT---C-A-G--C-GA-TGCT 639
|||||| || ||||| ||||||| || |||||||||||||| | | | | || ||||
Sbjct 591 GCTAAACTGGCTCTTGATGACGACGAAAACACTTCTAGTATCAGCGATGCTCAGACTGCT 650
Query 640 CAAACTATTCAGACCAGAGATTCTTGTAACGACGACACTGAAGAAATTGAGCCTGAAACT 699
|||||| |||||| |||||||||| ||||||||||||||||||| || |||||||||||
Sbjct 651 CAAACTGTTCAGATCAGAGATTCTAGTAACGACGACACTGAAGATATAGAGCCTGAAACA 710
Query 700 AGATTGATTACTCACGACACAGCAGCAAATGATCCACTAACAGTTGAGGTTGCTGAAGAT 759
|||||||| |||| || |||||||| |||||||||||||||||||||||||| ||||||
Sbjct 711 AGATTGATGCCTCATGAGACAGCAGCTAATGATCCACTAACAGTTGAGGTTGCAGAAGAT 770
Query 760 GCTGATACCTCTTCTAGCCCTGTGTTAGCAAGCAAGATTGACGAAGCTGAAGAACATTCT 819
|| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 771 GCAGATACCTCTTCTAGCCCTGTGTTGGAAAGCAAGATTGACGAAGCTGAAGAACATTCT 830
Query 820 TGTTCATCCTTGGTTACTGACCAAGTCTTTGATCCTATTAAA-CAAGCCCCT-GAGAACA 877
||||||||||||||||||||||||||||||||||||| |||| |||| |||| |||||||
Sbjct 831 TGTTCATCCTTGGTTACTGACCAAGTCTTTGATCCTA-TAAAGCAAG-CCCTCGAGAACA 888
Query 878 AATCTTCATCTGCTATAAGCCGTGAGAATATTGGAGGTTCCACCCTGAGGCCATTGCTTT 937
||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||| ||
Sbjct 889 AATCTTCATCTGCTATAAGCCGTGAGAGTATTGGAGGTTCCACACTGAGACCATTGCATT 948
Query 938 TGGAGACCC--G-GAAGGCAAATGCTACAAACGAAGATGGGGACATATTGAAGGATCATC 994
| ||||||| | |||||||||| ||||| |||||||||| || |||||||||||||| |
Sbjct 949 TAGAGACCCGGGAGAAGGCAAATACTACAGACGAAGATGGAGATATATTGAAGGATCACC 1008
Query 995 AGCAAAACGATAGCTTGCAAGATATTGTAACTGCTTCTGAACCTTTTACCACAGAGTCTC 1054
|||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||
Sbjct 1009 AGCAAAACGATAGCTTGCAAGACATTGTAACTGTTTCGGAACCTTTTACCACAGAGTCTC 1068
Query 1055 TCTTAGAAATGTGTGATGAACCGGACAAAGGGAGAGAAATCTCATGTGGTGAGAGAAGCA 1114
||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||
Sbjct 1069 TCTTAGAAATGTGTGATGAACCGGACAAAGGCAGAGATATCCCATGTGGTGAGAGAAGCA 1128
Query 1115 AAAAACCACAACCTGAAGCTGTGGTGAAGACTGTTGTTAAAGACGAGCTGATCATAAGCT 1174
||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1129 AAAAATCACATCCTGAAGCTGTGGTGAAGACTGTAGTTAAAGACGAGCTGATCATAAGCT 1188
Query 1175 TGCTTACCGAGGCAAGAAAAAAGGCAGAGAGCAAGAATCCTGGGTCAGTCCTAATAAAGA 1234
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1189 TGCTTACCGAGGCAAGAAAAAAGGCAGAGAGCAAGAATCCTGGGTCAGTCCTTATAAAGA 1248
Query 1235 AGAGGCAGAGACAATCTAACAGCAGCGATAGTAATGGCGTGAACACAAGTTTTATCAGAA 1294
|||| |||||||| ||||| ||||| || | ||| |||| ||||||||||||||||||||
Sbjct 1249 AGAGACAGAGACAGTCTAATAGCAGTGACAATAAAGGCGCGAACACAAGTTTTATCAGAA 1308
Query 1295 ACATCAAGCAGAAAGTACAAGGTGGGGCTGGTGAGATTAATATTGATCCAGTTAAAAACT 1354
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1309 ACATCAAGCAGAAAGTACAAGGTGGAGCTGGTGAGATTAATATTGATCCAGTTAAAAACT 1368
Query 1355 C-AGCCAGGTCGACACCTAAGATCATCAGGGGTTCAAGTGTTCCCACACAGCATGCAGAT 1413
| | ||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1369 CAACCCA-GTCGACACCAAAGATCATCAGGGGTTCGAGTGTTCCCACACAGCATGCAGAT 1427
Query 1414 TCATTGTTGGA---TTCGATAGACGGAAAAATCCAGAGAGGTGGACATAATGGAAGTGAC 1470
|| |||||||| ||| || |||||||||||||||||||||||| | |||| ||||| |
Sbjct 1428 TCGTTGTTGGATTCTTCCATGGACGGAAAAATCCAGAGAGGTGGAAAAAATGTAAGTGGC 1487
Query 1471 TCGGTGATATCATTATCAATAAGTGAGTTGAAGAAGAAGACAGGCAAGGAATTAAGAAGC 1530
|| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1488 TCATTGATATCATTATCCATAAGTGAGTTGAAGAAGAAGACAGGCAAGGAATTAAGAAGC 1547
Query 1531 ATAGCGAAGGATCTGAAAGTAAC-ACATTACTATAAGCTCAAGAAAGAAGATCTGCTTCA 1589
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1548 ATAGCGAAGGATCTGAAAGT-ACAACATTACTATAAGCTCAAGAAAGAAGATCTGCTTCA 1606
Query 1590 ACGGATAACCAATCAACTAAA-CCCCAGTTAGCCGATTGTACAAAGCAGAGAATGGAGTC 1648
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1607 ACGGATAACCAATCAACTAAACCCCCAGTTAGCCGATTGTACAAAGCAGAGAATGGAGTC 1666
Query 1649 ATAACCGATCTCAGTGGTATAGTTAACATTAGGCCTTACACAACAGTCCTTCTCATTTGT 1708
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1667 ATAACCGATCTCAGTGGTATAGTTAACATTAGGCCTTACACAACAGTCCTTCTCTTTTGT 1726
Query 1709 TTCTTTCTCTCTATGGTACAACCATTAGCTTGAATAATCATGCGGAGGTTGCTTGGCTTT 1768
|||||| ||||||||||||||||| |||||||| ||||||| ||||||||||||||||||
Sbjct 1727 TTCTTTGTCTCTATGGTACAACCACTAGCTTGAGTAATCATACGGAGGTTGCTTGGCTTT 1786
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87449349390
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5