BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483239
Length=811
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41600.5 | Symbols: | Mitochondrial glycoprotein family pro... 852 0.0
> AT2G41600.5 | Symbols: | Mitochondrial glycoprotein family protein
| chr2:17344637-17346737 REVERSE LENGTH=809
Length=809
Score = 852 bits (461), Expect = 0.0
Identities = 574/628 (91%), Gaps = 10/628 (2%)
Strand=Plus/Plus
Query 3 GAGATGAGGAAGCTGAATCCGCTTCTGAAACGAGGCTTGAAAGCTGTTGAAAATGGTGAT 62
|||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 34 GAGATGAGGAAGTTGAATCCGCTTCTGAAACGAGGCTTGAAGGCTATTGAAAATGGTGAT 93
Query 63 TTGGTGAAGATCCTCCAAACTGAAATTCGTCACGAAATCTCCCATCCTCGTTTCCTGGGC 122
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 94 TTGTTGAAGATCCTCCAAAGTGAAATTCGTCACGAAATCTCCCATCCTCGTTTCCAGGGC 153
Query 123 GTTGAGACCGGTTCTCTAGGAGATTTCAAATTGGATTGGGATTCTCCGGAAAGCCAAGAT 182
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 154 GTTGAGACCGGTTCTCTAGGAGATTTCAAATTGGATTGGGATTCACCGGAAAGCCAAGAT 213
Query 183 ATTGTTCTGAAGAGACAGTTTGTTTCAGGCGAGGAGGTTGTGGTCTCGGCTTTATTGCAA 242
|||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||
Sbjct 214 ATTGTTCTGAAGAGACAGTTTGATTCAGGCGAGAAGGTTGTGGTCTCTGCTTTATTGCAA 273
Query 243 CCAGAACCTATAGAACTAGATGATGATTTAGTGTTTCCTAGGGAAGCTCTTGCCAAAGTT 302
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 274 CCAGAACCTATAGAACTAGAAGATGATTTAGTGTTTCCTAGGGAAGCTCATGCCAAAGTT 333
Query 303 TGTATCAAAAAGCCTGGACTCAGCTCTATCTTGCAGTTTCATTGCCGGGTTTACGAAACA 362
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 334 TGTATCAAAAAGCCTGGTCTCAGCTCTATCTTGCAGTTTCATTGCCGGGTTTACGAATCA 393
Query 363 GGATCTGGATCTTCTGATTTCGACATTGAGAAAGCGCG--CTTTATCCGCTCTTTGGTTT 420
||||||||||||||| |||||||||| |||| |||| ||||||||||||||| ||||
Sbjct 394 GGATCTGGATCTTCTCATTTCGACATCGAGA--GCGCCTACTTTATCCGCTCTTTTGTTT 451
Query 421 CTGCTTCTTCTTCGACTTATAGAGATAATTTTCTCAGGCCAA-TAGATTTCAAACTAGGG 479
||||| ||||||| |||||| |||| ||||| |||| |||| ||||| |||||||
Sbjct 452 CTGCTCCTTCTTCCACTTATGGAGACCATTTTTTCAG-CCAAGTAGATCCCAAACTACA- 509
Query 480 CA-TGAACTACG-GCATTATCTAATATCCAAGGGAATCAGTGAAGGCCTAACCAATTTCA 537
|| || ||| | ||| || |||||||| ||||| ||||||||||| |||| ||||||
Sbjct 510 CAGTGCACTG-GAGCAATACCTAATATCTAAGGGGGTCAGTGAAGGCTTAACTAATTTCC 568
Query 538 TCGTGTGTCACCTGAACAAGAAGGAGCAGGATCAGTACGTTAACTGGTTACGCAAGCTTG 597
| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 569 TTTTGTGTCACCTGAACAAGAAGGAGCAGGATCAATACGTTAACTGGTTACGCAGGCTTG 628
Query 598 AATCAACAATGTCGCATTCTCCAAAGCC 625
||||||| ||||| ||||||||||||||
Sbjct 629 AATCAACTATGTCACATTCTCCAAAGCC 656
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39484039542
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5