BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483241
Length=3770
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41620.1 | Symbols: | Nucleoporin interacting component (Nu... 4503 0.0
AT3G57350.1 | Symbols: | Nucleoporin interacting component (Nu... 2510 0.0
AT2G41610.1 | Symbols: | unknown protein; Has 35333 Blast hits... 1050 0.0
> AT2G41620.1 | Symbols: | Nucleoporin interacting component (Nup93/Nic96-like)
family protein | chr2:17347304-17355084 REVERSE
LENGTH=3859
Length=3859
Score = 4503 bits (2438), Expect = 0.0
Identities = 2598/2674 (97%), Gaps = 16/2674 (1%)
Strand=Plus/Plus
Query 1 AAAAAGGTTTGAATCCC-CCGAGAAACCCTCTCTTTGCTTCTTCTCCG---GC----T-G 51
||||||||||||||||| || ||||||||||||||||| |||| ||| || | |
Sbjct 10 AAAAAGGTTTGAATCCCGACG-GAAACCCTCTCTTTGCTGCTTCCCCGACTGCGTAGTAG 68
Query 52 -A-CT-G---CGAAAATCAATGGCGAACGACCAAGAGATGAGTGGTTGGACTGATCTTCT 105
| || | | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 69 TAGCTCGAATCCAAAATCAATGGCGAACGACCAAGAGATGAGTGGTTGGACTGATCTTCT 128
Query 106 CCATTCTTCGTCGAAGCTTCTTGAGCAAGCTGCTCCTTCTTCTCAGTTTCCTCCTCTTCA 165
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 129 CCATTCTTCGTCGAAGCTTCTGGAGCAAGCTGCTCCTTCTTCTCAGTTTCCTCCTCTTCA 188
Query 166 GAGAAATTTAGATCAATTGGAAGCGTTATCGAAGAAGCTCAAGGCTAAAACCCTAAGGAA 225
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 189 GAGAAATTTAGATCAGTTGGAAGCGTTATCGAAGAAGCTCAAGGCTAAAACCCTGAGGAA 248
Query 226 CGAAGCTCCTTCTCAGTCTATTGCTGCCACTAGACTACTCGCACGGGAGGGAATCAATGC 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 249 CGAAGCTCCTTCTCAGTCTATTGCTGCCACTAGACTACTCGCACGGGAGGGAATCAATGC 308
Query 286 AGAGCAACTAGCTCGTGATCTTAAATCTTTTGAGCTCAAGACAACATTTGAGGATGTGTT 345
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 309 AGAGCAACTAGCTCGTGATCTTAAATCTTTCGAGCTCAAGACAACATTTGAGGATGTGTT 368
Query 346 CCCTGCTGAGGCGACGAGCGTTGAAGAATACCTGCAACAGGTTCATGAAATGGCTATGGT 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 369 CCCTGCTGAGGCGACGAGCGTTGAAGAATACCTGCAACAGGTTCATGAAATGGCTATGGT 428
Query 406 ATCAGCTATACAGGAAGCCCAAAAGGATAATGTTCGAAGCTTTAATGACTACATGATGAA 465
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 429 ATCAGCTATTCAGGAAGCCCAAAAGGATAATGTTCGAAGCTTTAATGACTACATGATGAA 488
Query 466 AGTGCTGGAGGAGGATTGGAGAAAAGAAAAACGTGACTTCCTTCAGAGCCTCAGCAGAAT 525
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 489 AGTGTTGGAGGAGGATTGGAGAAAAGAAAAACGTGACTTCCTTCAGAGCCTCAGCAGAAT 548
Query 526 ATCAATGCTACCTAAAACAAATATGATTGATACAAGCAGAGAGGCTCATGCTGGTCAACT 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 549 ATCAATGCTACCTAAAACAAATATGATTGATACAAGCAGAGAGGCTCATGCTGGTCAACT 608
Query 586 AGTGCCGGTGGCCTCGAGTCCTCGAGTATCCTCAACACCAGGCAAAGAACTCGTGGCTCT 645
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 609 AGTGCCGGTGGGTTCGAGTCCTCGAGTATCCTCAACTCCAGGCAAAGAACTCGTGGCTCT 668
Query 646 GGCTAACATACCCATTCATGAGAAAAAAGCATATGTCTATGGAGAGGTTGTGAAGAAACT 705
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 669 GGCTAACATACCCATTCATGAGAAAAAAGCATATGTCTATGGGGAGGTTGTGAAGAAACT 728
Query 706 TAACTCTTCAAGAGAACGAGGCTTGCCATTTAGACCTGCTATGTGTTTTAAGGAAGCTTA 765
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 729 TAACACTTCAAGAGAACGAGGCATGCCATTTAGACCTGCTATGTGTTTTAAGGACGCTTA 788
Query 766 TGATACTCTTGGTGCTGAGGTTACTCGTGGAAAATCAGTCAACATGCAGAAAATATGGCA 825
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 789 TGATACTCTTGGTGCTGAGGTAACTCGTGGAAAATCAGTCAACATGCAGAAAATATGGCA 848
Query 826 GCTTGTTCAGGCAATAACAGGTGAAGATTCAGCAGTTCGACAGGGTGTTTCGAAGAGGAT 885
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 849 GCTTGTTCAGGCAATAACAGGTGAAGATTCAGCAGTTCGACAGGGTGTTTCGAAGAGGAT 908
Query 886 GGCCCTCGCGATAGGTGCAAGACATCATTTACAACATGGGCATGAGAAATTTATAATGGA 945
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 909 GGCCCTCGCGATAGGTGCAAGACATCATTTACAACATGGGCATGAGAAATTTATAATGGA 968
Query 946 CACAATTCAAAGTCACCCTACCCAGGCTGCTCTTGGTGGATCTGTTGGAAATTTGCAAAG 1005
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 969 CACAATTCAAACTCACCCTACACAGGCTGCTCTTGGTGGATCTGTTGGAAATTTGCAAAG 1028
Query 1006 AATTCGTGCTTTCCTTCGGATTCGTTTGAGAGACTATGGAGTTTTAGATTTTGATTCAAC 1065
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1029 AATTCGTGCTTTCCTTCGGATTCGTTTGAGAGACTATGGAGTTTTAGATTTTGATTCAAC 1088
Query 1066 TGATGCTCGTAGGCAGCCTCCTGTTGATACTACTTGGCAACAGATATATTTTTGCTTGCG 1125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1089 TGATGCTCGTAGGCAGCCTCCTGTTGATACTACTTGGCAACAGATATATTTTTGCTTGCG 1148
Query 1126 AACTGGGTATTATGAGGAGGCTAGGGAAATCGCTCGGGCAACGCGGTCATCTCAGCAATT 1185
|||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||
Sbjct 1149 AACTGGGTATTATGAGGAGGCTAGGGAAATTGCTCGGTCAACACGGTCATCTCAGCAATT 1208
Query 1186 TGCACCACTGCTTACCGAGTGGATTACCACAGATGGTATGGTGGCTGCAGAGTCTGCAGC 1245
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1209 TGCACCACTGCTTACAGAGTGGATTACCACAGATGGTATGGTGGCTGCAGAGTCTGCAGC 1268
Query 1246 TATTGCATCAGAAGAATGTGAGAAAATGCTAAGGATGGGTGATCGGTTGGGTCGAACCGC 1305
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1269 TATTGCATCAGAAGAATGTGAGAAAATGCTAAGGATGGGCGATCGGTTGGGTCGAACAGC 1328
Query 1306 TTATGACAAGAAAAAACTCCTACTCTACACTATCATTTCTGGTTCCCGTAGGCAAGTTGA 1365
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1329 TTATGACAAGAAAAAACTCCTACTCTACACTATCATTTCTGGTTCCCGTAGGCAAATTGA 1388
Query 1366 GCGCATACTGAGGGATCTATCTACACTCTTTAACACAATTGAAGATTTCTTATGGTTCAA 1425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1389 GCGCATACTGAGGGATCTATCTACACTCTTTAACACAATTGAAGATTTCTTATGGTTCAA 1448
Query 1426 ATTGTCATGCATAAGAGACGTCACTGGTGTATCTTCATCTCTGGTCCTGAATGATGGCCT 1485
||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||
Sbjct 1449 ATTGTCATGCATAAGAGACGTCACTGGTGGATCCTCATCTGTGGTCCTGAATGATGGCCT 1508
Query 1486 TGCGCCTTACAGTTTGGATGATCTTCAGGCTTATCTCAATAAATTCGAGCCTTCATACTA 1545
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1509 TGCGCCATACAGTTTGGATGATCTTCAGGCTTATCTCAATAAATTTGAGCCTTCATACTA 1568
Query 1546 CACGAAGAATGGAAAAGACCCCTTAGTATATCCATATGTTTTGCTTCTCAGCATTCAGTT 1605
||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1569 CACAAAGAATGGAAAAGACCCCTTGGTATATCCATATGTTTTGCTTCTCAGTGTTCAGTT 1628
Query 1606 GCTACCGGCTATCATGCACTTATCTAAAGAAGCAGGAGACGGAGGGTATAATATTGATGC 1665
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1629 GCTACCGGCCATCATGCACTTATCCAAAGAAGCAGGAGACGGAGGGTATAATATTGATGC 1688
Query 1666 TATTCACATAGCTATTTCTTTGGTGGACCATTCCGTTTTATCTGAAGGCTCTGGGACTGG 1725
| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1689 TGTTCATATAGCTATTTCTTTGGTGGATCATTCCGTTTTATCTGAAGGCTCTGGGACTGG 1748
Query 1726 CCACAAACTAAGTGTGATGGATTCTAACGCTGAGGCATCTAGCATGATTAGGCAATATGG 1785
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1749 CCACAAACTAAGTGTGATGGATTCTAATGCTGAGGCATCTAGCATGATTAGGCAATATGG 1808
Query 1786 GTCAATGTTCCTGCATCACGGAGATCTCCAAATGACGGTAGAGTATTATGCACAAGCTGC 1845
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1809 GTCAATGTTTTTGCATCACGGAGATCTCCAAATGACGGTAGAGTATTATGCACAAGCTGC 1868
Query 1846 TGCTGCTGTAGGTGGGGGACAATTAGCTTGGTCTGGAAGAAGTAATGTGGATCAACAGAG 1905
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1869 TGCTACTGTAGGTGGGGGACAATTAGCTTGGTCTGGAAGAAGTAATGTGGATCAACAAAG 1928
Query 1906 GCAGAGAAACTTAATGCTGAAGCAGCTACTAACTGAGATTCTGCTTCGAGAAAGAGGTAT 1965
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1929 GCAGAGAAACCTAATGCTGAAGCAGCTACTGACTGAGATTCTGCTTCGAGAAAGAGGTAT 1988
Query 1966 TTACTTTTTGCTTGGAGCAAGAGGTTCTGGTGAAGAAGGTCAGCTTGGAAGATTTTTCCC 2025
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1989 TTACTTTTTGCTTGGAGCAAGAGGTTCTGGTGAAGAAGGTCAGCTTGGAAGATTTTTCCC 2048
Query 2026 TGATTCTAGATTGAGACAACAGTTCTTGGTCGAAGCTGCACATCAATGTCAAGAAGCTGG 2085
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2049 TGATTCTAGATTGAGACAACAGTTCTTGGTCGAAGCTGCACATCAATGTCAAGAAGCTGG 2108
Query 2086 ATTATATGACAAATCCATAGAGATACAGAAGAGGGTGGGTGCATTTGCGGCTGCCTTGGA 2145
|||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||
Sbjct 2109 ATTATATGACAAATCCATAGAGTTACAGAAGAGGGTGGGTGCATTTTCCGCTGCCTTGGA 2168
Query 2146 GACTATAAACAAGTGTCTATCTGAAGCCATCTGTTCTCTTGCCCGTGGAAGGTTGGATGG 2205
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2169 GACTATAAACAAGTGTCTATCCGAAGCCATCTGTTCTCTTGCCCGTGGAAGGTTGGATGG 2228
Query 2206 TGAAAGCAGAACATCAGGGCTTATTCTCGCAGGGAACGATATTCTTGAGACTTACAAATA 2265
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2229 TGAAAGTAGAACATCAGGGCTTATTCTCGCAGGGAACGATATTCTTGAGACTTACAAATA 2288
Query 2266 TTACCCTGAAGTCAGTCTCCAGGAAAGAGAGCGAGTGATGGAACAAGAAACCATACTAAG 2325
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2289 TTACCCTGAAGTTAGTCTCCAGGAAAGAGAGCGAGTGATGGAACAAGAAACCATACTAAG 2348
Query 2326 AGAGCTTGAGGCAATACTATCGATCCACAAGTTGGGTAGATTAGGCAATCATCTGGATGC 2385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2349 AGAGCTTGAGGCAATACTATCGATCCACAAGTTGGGTAGATTAGGCAATCATCTGGATGC 2408
Query 2386 TTTAAGGGAAATTGCAAAACTTCCATTCCTTCATCTTGATCCAAGAGTGCCCGATGCAAC 2445
||| || |||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 2409 TTTGAGAGAAATTGCAAAACTTCCATTTCTTCATCTTGATCCAAGAATGCCCGATGCAAC 2468
Query 2446 CGCTGATGTGTTCCAGAGCGCATCTCCTTACTTCCAGGCTTGTGTCCCGGACCTGCTCAA 2505
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2469 CGCTGATGTGTTCCAGAGCGCATCTCCTTACTTCCAGACTTGTGTCCCGGACCTGCTCAA 2528
Query 2506 AGTTGCTCTAACGTGTCTGGACAATGTACCTGACACTGATGGGTCGATCCGTGCCATGAG 2565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2529 AGTTGCTCTAACGTGTCTGGACAATGTACCTGACACTGATGGGTCGATCCGTGCCATGAG 2588
Query 2566 ATCCAAGATTGCTGGGTTTCTTGCAAGCAACACGCACCGGAACTGGCCTCGTGACTTGTA 2625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2589 ATCCAAGATTGCTGGGTTTCTTGCAAGCAACACGCACCGGAACTGGCCTCGTGACTTGTA 2648
Query 2626 CGAGAAGGTGGCTCGAAGCTTTTGAATATTTTTG 2659
||||||||||||||||||||||||| ||||||||
Sbjct 2649 CGAGAAGGTGGCTCGAAGCTTTTGAGTATTTTTG 2682
Score = 1118 bits (605), Expect = 0.0
Identities = 924/1072 (86%), Gaps = 45/1072 (4%)
Strand=Plus/Plus
Query 2716 ATCTAGGTGAAACATGTAATATTGCAGAGAGATTGTTTTTATAGAATTTGTTGTTTTTGT 2775
||||||||| | |||||||||||| ||| ||||||| ||||||||||| || ||||||
Sbjct 2813 ATCTAGGTGCCATATGTAATATTGC--AGATATTGTTTCTATAGAATTTGATG-TTTTGT 2869
Query 2776 GTGAG-T-TATGATATAGTGGATTTTGATAAGAAATTGTTGtttattttcttatatctaa 2833
||||| | |||||| ||||||||| ||||||||||||||| || ||||| |||||||||
Sbjct 2870 GTGAGTTATATGATGTAGTGGATTCTGATAAGAAATTGTTATTAATTTTGGTATATCTAA 2929
Query 2834 aattatataa-tatcaattcaaattaattattttttgtcatttttattGAAAGTTACTGA 2892
|| |||||| | |||| | ||||||| || ||||||||||||||||||||||| | |
Sbjct 2930 GATGATATAACT-TCAACTAAAATTAACTA-GTTTTGTCATTTTTATTGAAAGTTTTTAA 2987
Query 2893 TGCAGAATCGAATTTAAAGAGATCTGAAGAAAATGATAAATT---TTTG-CATGGCATGA 2948
|||| ||||||||||||| ||||| |||| ||| | ||| | |||| |||
Sbjct 2988 TGCAAAATCGAATTTAAACAGATCCGAAG-CAAT-TTTCATTGACGAAGATATGG--TGA 3043
Query 2949 AA-AGAGTTTCTCTCATG-AAGATCTCA-AAATTGATATGGGGCGTGAGATGAAGAAGA- 3004
|| |||| || | | | | ||| | ||| | ||| | |||||||||||||
Sbjct 3044 AACAGAGCTT-T-AAAAGTAGGAT-GGAGAAAAGGGCATGAGAAAAGAGATGAAGAAGAG 3100
Query 3005 ATTG-TG-T-AATTACATAAACACAGATCAACAGAAGAAGAGAACCATACACAAAAACCC 3061
| | || | |||| | | | | || |||||||||| ||||| ||||||||||||
Sbjct 3101 AGAGATGTTCAATT-CCT--GC-GAAATTTCCAGAAGAAGAAAACCAAACACAAAAACCC 3156
Query 3062 TAAACAAGATGGGCTCTTTAGCAGGAGACATAACCGCCAAGTACACACAATCTCGTATAA 3121
|||||||||| ||||||| | ||||||||||||| ||||||||||||||||||| |||||
Sbjct 3157 TAAACAAGATAGGCTCTTCAACAGGAGACATAACGGCCAAGTACACACAATCTCTTATAA 3216
Query 3122 GAACAAGCAATGCCAATCCTTCCACTGCATTTTTAATCACCAAAACTCTCTTCTTCT-TT 3180
|||||||||||| || ||||| ||| ||||||||| |||||||||||| || || | ||
Sbjct 3217 GAACAAGCAATGTCAGTCCTTGCACAACATTTTTAACCACCAAAACTCTTTTATT-TATT 3275
Query 3181 CCTTCTTCTTTGCATAACTTGCTTATAATCCTCAAAATCAAAACACCAACCACCAAGAAC 3240
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 3276 CCTTCTTCTTTGCATAACTTGCATATAATCCTCAAAAACAAAACACCAACCACCAAGAAC 3335
Query 3241 GTTGTACTAGACCATCCTCGGTACGTGACAATCTTCCCTCCCACTATTAATGGCTCTTTC 3300
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 3336 GTTGTACTAGACCATCCTCGGTAAGAGACAATCTTCCCTCCCACTATTAATGGCTCTTTC 3395
Query 3301 CTGCATATACAAGACTTGCAGACTCCAGAGAAAGTTGACGTGACCAGAGCATCAAATCCT 3360
||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||
Sbjct 3396 CTGCATATACAAGACTTGCAGACTCCAGAGAAAGTAGATGTGACCAGAGCATCGAATCCT 3455
Query 3361 GTATAGTAGGGGAGAATCACAGCGTCTAAGTAAAGACTAGCGTGGAGGATTCCCGAGATA 3420
||||| ||||||||||||||||||||||||||||||||||||||||| || || ||||||
Sbjct 3456 GTATAATAGGGGAGAATCACAGCGTCTAAGTAAAGACTAGCGTGGAGAATACCAGAGATA 3515
Query 3421 GTAGAGGCTTCGAAGAAGACAAAGCTCGCTTCTTTTTCAATATTGTTCTCGAACATAAGC 3480
||||||||||||||||||||||| |||||||||||||| ||||||||||| || | ||||
Sbjct 3516 GTAGAGGCTTCGAAGAAGACAAAACTCGCTTCTTTTTCGATATTGTTCTCAAATAAAAGC 3575
Query 3481 ACCGAGAGTTGAACAAGCTGTACTATAGCAGGTCCAAAGATGGAAATTGGGAAAAGGGTG 3540
|| ||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 3576 ACTGAGAGCTGAACAAGCTGTAGTATCGCAGGTCCAAAGATGGAAATTGGGAAAAGGGTA 3635
Query 3541 TTGATCCTTTGACCTTTTGCAAGGATCAAGATGATCAAAGGAAGAGAGATTGGACCAGAA 3600
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 3636 TTGATCCTTTGACCTTTTGCAAGAATCAAGATGATCAAAGGAAGAGAGATTGGACCAGAA 3695
Query 3601 GGAAGTAAGTACCT-CTTTGCTTTatcatcatcatcatcatcatcatTAGCAtcttctct 3659
|||||||||||||| ||| ||||| ||||||||| ||||||||||||| | | ||||
Sbjct 3696 GGAAGTAAGTACCTTCTT-GCTTTGTCATCATCACCATCATCATCATT----T-T-CTCT 3748
Query 3660 tcttcttcttGATATAATTACCTTCCTTAAGACAACAATTAGCGTCGTCAAGTAAAG-AA 3718
||||||||||||||| | |||||||||| ||||||||||||||||||||| ||| | ||
Sbjct 3749 TCTTCTTCTTGATAT--T-ACCTTCCTTACGACAACAATTAGCGTCGTCAAATAA-GTAA 3804
Query 3719 CCGTGATGAAGAAGAAAACCAGAACATCAGTGATTTGAGGGTAGTCGCCGGC 3770
|||| | |||||||||||| ||||| || |||||||||||||||||||||||
Sbjct 3805 CCGTAACGAAGAAGAAAACTAGAACGTCGGTGATTTGAGGGTAGTCGCCGGC 3856
> AT3G57350.1 | Symbols: | Nucleoporin interacting component (Nup93/Nic96-like)
family protein | chr3:21220387-21225305 REVERSE
LENGTH=2802
Length=2802
Score = 2510 bits (1359), Expect = 0.0
Identities = 2209/2618 (84%), Gaps = 63/2618 (2%)
Strand=Plus/Plus
Query 65 ATGGCGAACGACCAAGAGATGAGTGGTTGGACTGATCTTCTCCATTCTTCGTCGAAGCTT 124
|||||||||||||| ||||||||||| |||||||||||||||||||||||| | ||||||
Sbjct 1 ATGGCGAACGACCAGGAGATGAGTGGATGGACTGATCTTCTCCATTCTTCGACTAAGCTT 60
Query 125 CTTGAGCAAGCTGCTCCTTCTTCTCAGTTTCCTCCTCTTCAGAGAAATTTAGATCAATTG 184
|| |||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 61 CTGGAGCAAGCGGCTCCTTCTTCTCAGTTTCCTCCTCTTCAGAGGAATTTGGATCAATTG 120
Query 185 GAAGCGTTATCGAAGAAGCTCAAGGCTAAAACCCTAAGGAACGAAGCTCCTTCTCAGTCT 244
||||| || |||| ||| ||||| |||||||||||||| |||||||||||||| ||||||
Sbjct 121 GAAGCATTGTCGAGGAAACTCAAAGCTAAAACCCTAAGAAACGAAGCTCCTTCACAGTCT 180
Query 245 ATTGCTGCCACTAGACTACTCGCACGGGAGGGAATCAATGCAGAGCAACTAGCTCGTGAT 304
|||||||||||||||||||| ||||||||||||||||||||||| ||| || ||||||||
Sbjct 181 ATTGCTGCCACTAGACTACTTGCACGGGAGGGAATCAATGCAGATCAATTATCTCGTGAT 240
Query 305 CTTAAATCTTTTGAGCTCAAGACAACATTTGAGGATGTGTTCCCTGCTGAGGCGACGAGC 364
||||| || |||||| | ||||| || ||||| ||||| |||||||| ||| | || ||
Sbjct 241 CTTAAGTCATTTGAGTTGAAGACGACTTTTGAAGATGTATTCCCTGCGGAGACAACAAGT 300
Query 365 GTTGAAGAATACCTGCAACAGGTTCATGAAATGGCTATGGTATCAGCTATACAGGAAGCC 424
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||
Sbjct 301 GTTGAAGAATACCTGCAACAGGTTCATGAAATGGCAATGGTATCGGCTATACAGGAGGCC 360
Query 425 CA-AAAGGATAATGTTCGAAGCTTTAATGACTACATGATGAAAGTGCTGGAGGAGGATTG 483
|| ||| |||||||||||||||||||| |||||||| |||||||| |||||||||| ||
Sbjct 361 CAGAAA-GATAATGTTCGAAGCTTTAACAACTACATGTTGAAAGTGTTGGAGGAGGACTG 419
Query 484 GAGAAAAGAAAAACGTGACTTCCTTCAGAGCCTCAGCAGAA-TATCAATGCTACCTAAAA 542
| |||||||||||||||||| ||||| ||||| |||| || | |||||| ||||||| |
Sbjct 420 TATAAAAGAAAAACGTGACTTTCTTCACAGCCTTAGCAAAACT-TCAATGTTACCTAAGA 478
Query 543 CAAATATGATTGATACAAGCAGAGAG-GCTCATGCTGG-TCAACTAGTGCCGGTGGCCTC 600
| || ||||| || |||| |||| | |||||||||| || ||||||||| | |
Sbjct 479 CCAAGATGATCAATTCAAGTAGAG-GCTCTCATGCTGGTTC-ACTAGTGCC--T----TT 530
Query 601 GAGTCCTCGAGTATCCTCAACACCAGGCAA-AGAACTCGTGGCTCTGGCTAACATACCCA 659
|||||| | |||||| |||| ||| || || ||||||||| || || |||||| |||||
Sbjct 531 GAGTCCCCAAGTATCTTCAAAACCTGG-AACGGAACTCGTGTCTATGACTAACAAACCCA 589
Query 660 TTCATGAGAAAAAAGCATATGTCTATGGAGAGGTTGTGAAGAAACTTAACTCTTCAAGAG 719
||||||||||||| ||||||||||||| ||||||||||| ||||| |||||| ||||||
Sbjct 590 TTCATGAGAAAAAGGCATATGTCTATGCCGAGGTTGTGAAAAAACTAAACTCTGCAAGAG 649
Query 720 AACGAGGCTTGCCATTTAGACCTGC--TATGTGTTTTAA-GGAAGCTTATGATACTCTTG 776
|||||||||||||||||| || ||| || || || || || || ||||| | ||| |
Sbjct 650 AACGAGGCTTGCCATTTAAACTTGCAACAT-TG-TTCAACGG-TGCATATGAAAGTCTAG 706
Query 777 GTGCTGAGGTT-ACTCGTGGAAAATCAGTCAACATGCAGAAAA-TATGGCAGCTTGTTCA 834
||| || |||||||||||||||||||||||||| |||| ||||||||||| ||||
Sbjct 707 AAATTGA-TTTGACTCGTGGAAAATCAGTCAACATGCA-AAAATTATGGCAGCTTATTCA 764
Query 835 GGCAATAACAGGTGAAGATTCAGCAGTTCGACAGGGTGTTTCGAAGAGGATGGCCCTCGC 894
|| ||| || |||||||| |||||||| | ||| |||||||| ||||||||||||||||
Sbjct 765 GGGAATGACGGGTGAAGAGTCAGCAGTACAACATGGTGTTTCCAAGAGGATGGCCCTCGT 824
Query 895 GATAGGTGCAAGACATCATTTACAACATGGGCATGAGAAATTTATAATGGACACAATTCA 954
|||||||||||||| || || || |||||||| |||| ||||||||| ||||||||
Sbjct 825 GATAGGTGCAAGACGCCACTTGGAATGTGGGCATGGGAAACATATAATGGATACAATTCA 884
Query 955 AAGTCACCCTACCCAGGCTGCTCTTGGTGGATCTGTTGGAAATTTGCAAAGAATTCGTGC 1014
|||||| ||||| || ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 885 AAGTCATCCTACACAAGCTGCTCTTGGTGGATCAGTTGGAAATTTGCAAAGAATTCGTGC 944
Query 1015 TTTCCTTCGGATTCGTTTGAGAGACTAT-GGAGTTTTAGATTTTGATTCAACTGATGCTC 1073
||| |||||||||||| ||||||| ||| |||| ||| || ||||||||| ||||||||
Sbjct 945 TTTTCTTCGGATTCGTCTGAGAGATTATGGGAG-TTTGGACTTTGATTCAGTTGATGCTC 1003
Query 1074 GTAGGCAGCCTCCTGTTGATACTACTTGGCAACAGATATATTTTTGCTTGCGAACTGGGT 1133
||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||| |
Sbjct 1004 GTAGGCAGCCTCCAGTTGATACTACTTGGCAGCAGATATATTTTTGCTTGAGAACTGGTT 1063
Query 1134 ATTATGAGGAGGCTAGGGAAATCGCTCGGGCAACGCGGTCATCTCAGC-A-A-TTTGCAC 1190
|||||||||| ||||| ||||| || | | || | ||||||||||| | | | ||||| |
Sbjct 1064 ATTATGAGGAAGCTAGAGAAATTGCCCAGTCATCTCGGTCATCTCAACAACAGTTTGCTC 1123
Query 1191 CACTGCTTACCGAGTGGATTACCACAGATGGTA-TGGTGGCTGCAGAGTCTGCAGCTATT 1249
| |||||||| ||||||||||| |||| ||||| | ||||||||| | | || |||| |
Sbjct 1124 CTCTGCTTACAGAGTGGATTACAACAGGTGGTACT-GTGGCTGCACAAACCGCTGCTACT 1182
Query 1250 GCATCAGAAGAATGTGAGAAAATGCTAAGGATGGGTGATCGGTTGGGTCGAACCGCTTAT 1309
|| || || |||||||||||| || ||||||||||||||||||| || | ||| | |||
Sbjct 1183 GCTTCTGAGGAATGTGAGAAATTGTTAAGGATGGGTGATCGGTTTGGCCAAACAACATAT 1242
Query 1310 GACAAGAAAAAACTCCTACTCTACACTATCATTTCTGGTTCCCGTAGGCAAGTTGAGCGC 1369
|||||||| || || ||||||||||||||||| ||||||||||| || ||| |||| |||
Sbjct 1243 GACAAGAAGAAGCTTCTACTCTACACTATCATATCTGGTTCCCGAAGACAAATTGATCGC 1302
Query 1370 ATAC-TGAGGGATCTATCTACACTCTTTAACACAATTGAAGA-TTTCTTATGGTTCAAAT 1427
|| | |||| ||| | || || |||||||||||||| ||||| |||| | |||||||||
Sbjct 1303 AT-CATGAGAGATTTTTCGACCCTCTTTAACACAATAGAAGATTTTC-TCTGGTTCAAAC 1360
Query 1428 TGTCATGCATAAGAGACGTCA-CTGGTGTATCTTCATCTCTGGTCCTGAATGATGGCCTT 1486
| ||||| || | ||||| | |||||| |||||||||| || || |||||||||| ||
Sbjct 1361 TATCATGTGTACGTGACGT-AGCTGGTGGATCTTCATCTATGATCGTGAATGATGGGCTA 1419
Query 1487 GCGCCTTACAGTTTGGATGATCTTCAGGCTTATCTCAATAAATTCGAGCCTTCATACTAC 1546
| ||| ||||||||||||||||| ||||| ||||| ||||| || ||||| || ||||||
Sbjct 1420 GTGCCATACAGTTTGGATGATCTCCAGGCCTATCTTAATAAGTTTGAGCCATCTTACTAC 1479
Query 1547 ACGAAGAATGGAAAAGACCCCT-TAGTATATCCATATGTTTTGCTTCTCAGCATTCAGTT 1605
|| |||||||| ||||| |||| | ||||| ||||||||||||||||| |||||||||||
Sbjct 1480 ACTAAGAATGGGAAAGA-CCCTCTGGTATACCCATATGTTTTGCTTCTTAGCATTCAGTT 1538
Query 1606 GCTACCGGCTATCATGCACTTATCTAAAGAAGCAGGAGACGGAGGGTATAATATTGATGC 1665
|||||||| ||||||||| | || || ||||| ||||| | ||||||||| ||||||||
Sbjct 1539 ACTACCGGCGATCATGCACATGTCCAACGAAGCTGGAGATGAAGGGTATAACATTGATGC 1598
Query 1666 TATTCACATAGCTATTTCTTTGGTGGACCATTCCGTTTTATCTGAAGGCTCTGGGACTGG 1725
| | || ||||||| || | |||||||||||| || | |||||||| |||||||||||
Sbjct 1599 TGTCCATGTAGCTATATCGCTAGTGGACCATTCCATTCTCTCTGAAGGATCTGGGACTGG 1658
Query 1726 CCACAAACTAAGTGTGATGGATTCTAACGCTGAGGCATCTAGCATGATTAGGCAATATGG 1785
| ||||||||||||||||||| |||| || |||||||||||||||||||||||||||||
Sbjct 1659 GCGCAAACTAAGTGTGATGGATGCTAATGCCGAGGCATCTAGCATGATTAGGCAATATGG 1718
Query 1786 GTCAATGT-TCCTGCATCACGGAGATCTCCAAATGACGGTAGAGTATTATGCACAAGCTG 1844
||| |||| | ||||||| || ||||| ||||||||| | || || |||||||||||||
Sbjct 1719 GTCGATGTATT-TGCATCATGGTGATCTGCAAATGACGCTGGAATACTATGCACAAGCTG 1777
Query 1845 CTGCTGCTGTAGGTGGGGGACAATTAG-CTTGGTCTGGAAGAAGTAATGTGGATCAACAG 1903
|| ||| ||||||||||| ||| || |||||||||||||||||||||| ||||||||
Sbjct 1778 CTATTGCAGTAGGTGGGGGTCAAC-AGGCTTGGTCTGGAAGAAGTAATGTTGATCAACAA 1836
Query 1904 AGGCAGAGAAACTTAATGCTGAAGCAGCTACTAACTGAGATTCTGCTTCGAGAA-AG-A- 1960
||||| || ||||| ||||||||||| ||||| ||||||||| || | | | || || |
Sbjct 1837 AGGCAAAGGAACTTGATGCTGAAGCAACTACTGACTGAGATTTTG-T-C-ACAAGAGGAT 1893
Query 1961 GGTATTTACTTTTTGCTTGGAGCAAGAGGTTCTGGTGAAGAAGGTC-AGCTTGGAAGATT 2019
|||||| ||||| ||||||| || |||||||| ||||||||||| | |||||||||||||
Sbjct 1894 GGTATTCACTTTCTGCTTGGTGCTAGAGGTTCCGGTGAAGAAGG-CGAGCTTGGAAGATT 1952
Query 2020 TTTCCCTGATTCTAGA-TTGAGACAACAGTTCTTGGTCGAAGCTGCACATCAATGTCAAG 2078
| | |||||| || | ||||| || ||||||||| |||||||||| ||||||| |||||
Sbjct 1953 TCTGCCTGATA-TAAAATTGAGGCAGCAGTTCTTGATCGAAGCTGCGCATCAATTTCAAG 2011
Query 2079 AAGCTGGATTATATGACAAATCCATAGAGA-TACAGAAGAGGGTGGGTGCATTTGCGGCT 2137
|||||||||||||||||||||| ||||| | |||||||||| || ||||| ||| || ||
Sbjct 2012 AAGCTGGATTATATGACAAATCAATAGA-ACTACAGAAGAGAGTTGGTGCGTTTTCGTCT 2070
Query 2138 GCCTTGGAGACTATAAACAAGTGTCTATCTGAAGCCATCTGTTCTCTTGCCCGTGGAAGG 2197
|||||||| || |||||||| ||||||||||||||||| || || |||| ||||||||||
Sbjct 2071 GCCTTGGAAACGATAAACAAATGTCTATCTGAAGCCATTTGCTCCCTTGTCCGTGGAAGG 2130
Query 2198 TTGGATGGTGAAAGCAGAACATCAGGG-CTTATTCTCGCAGGG-AACGATATTCTTGAGA 2255
|||||||||||| ||||| |||| ||| ||||| | ||| || || ||||| |
Sbjct 2131 CCAGATGGTGAAAGCCGAACAG-AGGGGCTTGTTCTCTC-GGGCAATGACATTCTCAATT 2188
Query 2256 CTTACAAATATTACCCTGAAGTCAGT-CTCCAGGAAAGAGAGCGAGTGATGGAACAAGAA 2314
||||||||||| ||||||| |||||| | |||||||||| | | || ||||||||||||
Sbjct 2189 CTTACAAATATCACCCTGATGTCAGTGC-CCAGGAAAGACATCTTGTTATGGAACAAGAA 2247
Query 2315 ACCATACTAAGAGAGCTTGAGGCAATACTATCGATCCACAAGTTGGGTAGATTAGGCAAT 2374
|| |||||||||||||||||||||||| |||||||||||||||||| ||| || |||
Sbjct 2248 ACAATACTAAGAGAGCTTGAGGCAATATTATCGATCCACAAGTTGGCCAGACTAAACAAA 2307
Query 2375 CATCTGGATGCTTTAAGGGAAATTGCAAAACTTCCATTCCTTCATCTTGATCCAAGAGTG 2434
||||| ||||| |||| ||| | || |||||||||||||||||||| |||||||||
Sbjct 2308 CATCTAGATGCCATAAGAGAAGTCGCGAAACTTCCATTCCTTCATCTCGATCCAAGACAA 2367
Query 2435 CCCGATGCAACCGCTGATGTGTTCCAGAGCGCATCTCCTTACTTCCAGGCTTGTGTCCCG 2494
|| || | ||| | |||| |||||||| |||||| ||||||| ||| ||||||||||
Sbjct 2368 CCAGACACCACCTCGGATGAGTTCCAGAAAGCATCTTCTTACTTTCAGACTTGTGTCCCT 2427
Query 2495 GACCTGCTCAAAGTTGCTCTAACGTGTCTGGACAATGTACCTGACACTGATGGGTCGATC 2554
|| | || || |||||||| || ||| |||| || ||| ||||||||||||| || |||
Sbjct 2428 GATTTACTTAAGGTTGCTCTGACCTGTTTGGATAACGTAGCTGACACTGATGGATCAATC 2487
Query 2555 CGTGCCATGAGATCCAAGATTGCTGGGTTTCTTGCAAGCAACACGCACCGGAACTGGCCT 2614
| | ||||||||| ||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 2488 AGGGGCATGAGATCTAAGATTGCTGGGTTTCTTGCAAGCAACACACAGCGGAACTGGCCT 2547
Query 2615 CGTGACTTGTACGAGAAGGTGGCTCGAAGCTTTTGAAT 2652
|| || |||||||||||| | |||||||||||||||||
Sbjct 2548 CGAGATTTGTACGAGAAGATAGCTCGAAGCTTTTGAAT 2585
> AT2G41610.1 | Symbols: | unknown protein; Has 35333 Blast hits
to 34131 proteins in 2444 species: Archae - 798; Bacteria
- 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:17347157-17348239
FORWARD LENGTH=1083
Length=1083
Score = 1050 bits (568), Expect = 0.0
Identities = 702/765 (92%), Gaps = 15/765 (2%)
Strand=Plus/Minus
Query 3009 TGTAATTACATAAACACAGATCAACAGAAGAAGAGAACCATACACAAAAACCCTAAACAA 3068
||| |||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||
Sbjct 903 TGTGATTACATAAACACATATCAACAGAAGAAGAAAACCAAACACAAAAACCCTAAACAA 844
Query 3069 GATGGGCTCTTTAGCAGGAGACATAACCGCCAAGTACACACAATCTCGTATAAGAACAAG 3128
||| ||||||| | ||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 843 GATAGGCTCTTCAACAGGAGACATAACGGCCAAGTACACACAATCTCTTATAAGAACAAG 784
Query 3129 CAATGCCAATCCTTCCACTGCATTTTTAATCACCAAAACTCTCTTCTTCT-TTCCTTCTT 3187
||||| || ||||| ||| ||||||||| |||||||||||| || || | |||||||||
Sbjct 783 CAATGTCAGTCCTTGCACAACATTTTTAACCACCAAAACTCTTTTATT-TATTCCTTCTT 725
Query 3188 CTTTGCATAACTTGCTTATAATCCTCAAAATCAAAACACCAACCACCAAGAACGTTGTAC 3247
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 724 CTTTGCATAACTTGCATATAATCCTCAAAAACAAAACACCAACCACCAAGAACGTTGTAC 665
Query 3248 TAGACCATCCTCGGTACGTGACAATCTTCCCTCCCACTATTAATGGCTCTTTCCTGCATA 3307
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 664 TAGACCATCCTCGGTAAGAGACAATCTTCCCTCCCACTATTAATGGCTCTTTCCTGCATA 605
Query 3308 TACAAGACTTGCAGACTCCAGAGAAAGTTGACGTGACCAGAGCATCAAATCCTGTATAGT 3367
|||||||||||||||||||||||||||| || |||||||||||||| ||||||||||| |
Sbjct 604 TACAAGACTTGCAGACTCCAGAGAAAGTAGATGTGACCAGAGCATCGAATCCTGTATAAT 545
Query 3368 AGGGGAGAATCACAGCGTCTAAGTAAAGACTAGCGTGGAGGATTCCCGAGATAGTAGAGG 3427
|||||||||||||||||||||||||||||||||||||||| || || |||||||||||||
Sbjct 544 AGGGGAGAATCACAGCGTCTAAGTAAAGACTAGCGTGGAGAATACCAGAGATAGTAGAGG 485
Query 3428 CTTCGAAGAAGACAAAGCTCGCTTCTTTTTCAATATTGTTCTCGAACATAAGCACCGAGA 3487
|||||||||||||||| |||||||||||||| ||||||||||| || | |||||| ||||
Sbjct 484 CTTCGAAGAAGACAAAACTCGCTTCTTTTTCGATATTGTTCTCAAATAAAAGCACTGAGA 425
Query 3488 GTTGAACAAGCTGTACTATAGCAGGTCCAAAGATGGAAATTGGGAAAAGGGTGTTGATCC 3547
| ||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 424 GCTGAACAAGCTGTAGTATCGCAGGTCCAAAGATGGAAATTGGGAAAAGGGTATTGATCC 365
Query 3548 TTTGACCTTTTGCAAGGATCAAGATGATCAAAGGAAGAGAGATTGGACCAGAAGGAAGTA 3607
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 TTTGACCTTTTGCAAGAATCAAGATGATCAAAGGAAGAGAGATTGGACCAGAAGGAAGTA 305
Query 3608 AGTACCT-CTTTGCTTTatcatcatcatcatcatcatcatTAGCAtcttctcttcttctt 3666
||||||| ||| ||||| ||||||||| ||||||||||||| | | |||||||||||
Sbjct 304 AGTACCTTCTT-GCTTTGTCATCATCACCATCATCATCATT----T-T-CTCTTCTTCTT 252
Query 3667 cttGATATAATTACCTTCCTTAAGACAACAATTAGCGTCGTCAAGTAAAG-AACCGTGAT 3725
|||||||| | |||||||||| ||||||||||||||||||||| ||| | |||||| |
Sbjct 251 CTTGATAT--T-ACCTTCCTTACGACAACAATTAGCGTCGTCAAATAA-GTAACCGTAAC 196
Query 3726 GAAGAAGAAAACCAGAACATCAGTGATTTGAGGGTAGTCGCCGGC 3770
|||||||||||| ||||| || |||||||||||||||||||||||
Sbjct 195 GAAGAAGAAAACTAGAACGTCGGTGATTTGAGGGTAGTCGCCGGC 151
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 187774867649
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5