BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483242
Length=749
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52140.1 | Symbols: | RING/U-box superfamily protein | chr5... 861 0.0
> AT5G52140.1 | Symbols: | RING/U-box superfamily protein | chr5:21184522-21186872
REVERSE LENGTH=887
Length=887
Score = 861 bits (466), Expect = 0.0
Identities = 614/686 (90%), Gaps = 7/686 (1%)
Strand=Plus/Plus
Query 69 GATTCAGCAAGACGAAGAAGCTTGTGTGTACTCTTGCTTACAT---GATGAAGGATTGGC 125
||||||| |||| |||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 162 GATTCAGAAAGAAGAAGAAGCTTGTGTACACTCTTGCTTACATGACGATGAAGGATTGGC 221
Query 126 AAGAACGTTGCAAGACTTGGAGGGTAAACTGCAGCCCTCTCTAAGCGATGATGAAATACT 185
||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||
Sbjct 222 AAGAACGTTGCAAGACTTGGAGGCTAATCTGCAGCCCTCTCTAAGCGATGATGAAAAACT 281
Query 186 TGCTAGATATTTGCAAGAACAAGATGAATCGGCAAATAATACGGACA-ATGATATCCAAG 244
||| ||||||||||||||||| ||||||| ||||||||||||||| | ||||||||||||
Sbjct 282 TGCAAGATATTTGCAAGAACATGATGAATTGGCAAATAATACGGA-AGATGATATCCAAG 340
Query 245 AAACCCATCACCGTCAGTACCAACCCATGCAAGTAAATCGTTCAAACATACCTCAACGTG 304
|||| ||||||| ||||||||| ||||||||||| ||||||||| |||||||||||||||
Sbjct 341 AAACACATCACCATCAGTACCACCCCATGCAAGTGAATCGTTCATACATACCTCAACGTG 400
Query 305 ATGC-CCTATCGACTAGTAAAGCCTTTTTTCACTACGACGGTGGTGAGAACTTCTCGGAT 363
|||| || |||| |||||| |||| |||||||||| |||| ||||||||||||||||| |
Sbjct 401 ATGCTCC-ATCGTCTAGTAGAGCCATTTTTCACTATGACGATGGTGAGAACTTCTCGGGT 459
Query 364 CATTATACGCATAGTCGTAGTCCTTCAAATATCTCCCACAATCCTCCCGATAATGAGAAC 423
| ||||||||||| || ||||||||||| || |||||||||||| | ||| ||||||||
Sbjct 460 CGTTATACGCATACTCATAGTCCTTCAAGCATTTCCCACAATCCTACTGATGATGAGAAC 519
Query 424 ATTGATCCCGCAAGTATGACGTATGAGGAAATATCTGAATTAGAAGACTCCATTGGAGAT 483
| |||||||| || |||||||||||||||| || |||| |||| |||||| ||||||||
Sbjct 520 AATGATCCCGAAAATATGACGTATGAGGAATTAACTGAGTTAGGAGACTCGGTTGGAGAT 579
Query 484 TTCAGTAAAGGATTATCGCAAAAAATGATCTCTCGATTGCGGACTCATAAGTATGGTATT 543
|| ||||||||||||||||| | | ||||||| |||||||||||||||||||||||| |
Sbjct 580 GTCGGTAAAGGATTATCGCAAGAGAGGATCTCTAGATTGCGGACTCATAAGTATGGTACT 639
Query 544 CAAACCAAAACTTGGTGCTGTTGGCTTAAGaaaaaaaaGTTTGTTGCCGATGATTCTCAG 603
|||||||| |||||| ||||| || || |||||| ||||||||||||||||||||||||
Sbjct 640 AAAACCAAATCTTGGTACTGTTTGCATATGAAAAAGAAGTTTGTTGCCGATGATTCTCAG 699
Query 604 TGTTCAATATGCCTAGTGGAGTATGCAAAGGGAGATAAGATTACAACTTTGCCATGTAAA 663
||||| ||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 700 TGTTCGATATGTCTAATGGAGTATGCAAAAGGAGATAAGATTACAACTTTGCCATGTAAA 759
Query 664 CATGTTTACCATAAGGATTGCATTTCACGATGGCTGAAACAAAACAAGGTATGCTGCGTT 723
||| | || ||||| ||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 760 CATATCTATCATAAAGATTGCATTTCACAATGGCTGAAACAAAACAAGGTATGCTGCATT 819
Query 724 TGCAAAGCCGTGGTTTATCCATAATA 749
||||| |||| |||||||||||||||
Sbjct 820 TGCAAGGCCGAGGTTTATCCATAATA 845
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36369522428
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5