BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483244
Length=1679
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41640.1 | Symbols: | Glycosyltransferase family 61 protein... 2628 0.0
> AT2G41640.1 | Symbols: | Glycosyltransferase family 61 protein
| chr2:17360491-17362535 FORWARD LENGTH=1810
Length=1810
Score = 2628 bits (1423), Expect = 0.0
Identities = 1601/1687 (95%), Gaps = 11/1687 (1%)
Strand=Plus/Plus
Query 1 CTCCTTTGTCCCCAAGAAAAGTATTTCTCTGTGTTTGTGTAGTTTCCTTTACCGCTGAAT 60
|||||| |||| ||||||||||| ||||| |||||||||||||| |||||||| |||||
Sbjct 30 CTCCTTCGTCCTCAAGAAAAGTAATTCTC--TGTTTGTGTAGTTTTCTTTACCGGTGAAT 87
Query 61 TTTCTCTCCGTTTTGTGCTTGAAACCTCACCCAAATCACCAAGATCGATCAAAATCGAAA 120
||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 88 TTTCTCTTCGTTTTGTGCTTCAAACGTCACCCAAATCACCAAGATCGATCAAAATCGAAA 147
Query 121 CTT-ACGTTTCAGAAGATGGTGCAGTACCAGAGATTAATCATCCACCATGGAAGAAAAGA 179
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 148 CTTAACGTTTCAGAAGATGGTGCAGTACCAGAGATTAATCATCCACCATGGAAGAAAAGA 207
Query 180 GGAAAAGTTTAGAG--T-TTCAGCAGAGGAAAGTGGTGGAGGT-G--GTTGCTACTCTAA 233
|| |||||||||| | ||||||||||||||||||||||||| | |||||||||| ||
Sbjct 208 AGATAAGTTTAGAGTTTCTTCAGCAGAGGAAAGTGGTGGAGGTGGTTGTTGCTACTCCAA 267
Query 234 GAGAGCTAAACAAAAGTTTCGCTGCCTTCTCTTTCTCTCTATCCTCTCTTGCTGTTTCGT 293
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 268 GAGAGCTAAACAAAAGTTTCGTTGTCTTCTCTTTCTCTCTATCCTCTCTTGCTGTTTCGT 327
Query 294 CATGTCTCCTTATTACCTCTTCGGCTTCTCTACTCTCTCCCTCCTAGATTCGTTTCGCAG 353
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 328 CTTGTCTCCTTATTACCTCTTCGGCTTCTCTACTCTCTCCCTCCTAGATTCGTTTCGCAG 387
Query 354 AGAAATCGAAGGTCTTAGCTCTTATGAGCCATTTATTACCCCTCTCTGCTCAGAAATCTC 413
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 388 AGAAATCGAAGGTCTTAGCTCTTATGAGCCAGTTATTACCCCTCTGTGCTCAGAAATCTC 447
Query 414 CAATGGAACCATTTGTTGTGACAGAACCGGTTTGAGATCTGATATATGTGTAATGAAAGG 473
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 448 CAATGGAACCATTTGTTGTGACAGAACCGGTTTGAGATCTGATATTTGTGTAATGAAAGG 507
Query 474 TGATATTCGTACAAACTCTGCTTCTTCCTCAATCTTCCTCTTCACCTCCTCCACCAAGAA 533
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 508 TGATGTTCGAACAAACTCTGCTTCTTCCTCAATCTTCCTCTTCACCTCCTCCACCAATAA 567
Query 534 CAACACAAAACCGGAAAAGATCAAACCTTACACTAGAAAGTGGGAGACTAGTGTGATGGA 593
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 568 CAACACAAAACCGGAAAAGATCAAACCTTACACTAGAAAATGGGAGACTAGTGTGATGGA 627
Query 594 CACAGTTCAAGAACTCAACCTCATCACCAAAGATTCGAATAGTTCTTCTGATCGTGTCTG 653
||| |||||||||||||||||||||||||||||||| || | ||||| |||||||| ||
Sbjct 628 CACCGTTCAAGAACTCAACCTCATCACCAAAGATTCCAACAAATCTTCAGATCGTGTATG 687
Query 654 CGATGTGTACCACGATGTTCCTGCTGTGTTCTTCTCCACTGGTGGATACACCGGTAACGT 713
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 688 CGATGTGTACCATGATGTTCCTGCTGTGTTCTTCTCCACTGGTGGATACACCGGTAACGT 747
Query 714 ATACCACGAGTTTAACGACGGGATTATCCCTTTGTTTATAACTTCACAGCATTACAACAA 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 748 ATACCACGAGTTTAACGACGGGATTATCCCTTTGTTTATAACTTCACAGCATTACAACAA 807
Query 774 AAAAGTTGTGTTTGTGATCGTCGAGTATCATGATTGGTGGGAGATGAAGTATGGAGATAT 833
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 808 AAAAGTTGTGTTTGTGATCGTCGAGTATCATGACTGGTGGGAGATGAAGTATGGAGATGT 867
Query 834 CGTTTCGCAGCTCTCGGATTATCCTCTGGTTGATTTCAGTGGAGATGCGAGAACACATTG 893
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 868 CGTTTCGCAGCTCTCGGATTATCCTCTGGTTGATTTCAATGGAGATACGAGAACACATTG 927
Query 894 TTTCAAAGAAGCAACCGTTGGATTACGTATTCACGATGAGTTAACTGTGAATTCTTCACT 953
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 928 TTTCAAAGAAGCAACCGTTGGATTACGTATTCACGACGAGTTAACTGTGAATTCTTCTTT 987
Query 954 GGTCATTGGGAATCAAACCATTGTTGATTTCAGAAACGTTTTGGATCGGGGTTATTCGCA 1013
||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||
Sbjct 988 GGTCATTGGGAATCAAACCATTGTTGACTTCAGAAACGTTTTGGATAGGGGTTACTCGCA 1047
Query 1014 TCGTATCCAAAGCTTGATTCAGGAGGAAACAGAGGCGAATGTGACCGCACTCGATTTCAA 1073
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1048 TCGTATCCAAAGCTTGACTCAGGAGGAAACAGAGGCGAACGTGACCGCACTCGATTTCAA 1107
Query 1074 GAAGAAGCCAAAACTGGTGATTCTATCAAGAAACGGATCATCGAGGGCGATATTGAACGA 1133
|||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| |||||
Sbjct 1108 GAAGAAGCCAAAACTGGTGATTCTTTCAAGAAACGGGTCATCAAGGGCGATATTAAACGA 1167
Query 1134 GAATCTTCTCGTGGAGCTAGCAGAGGAAACAGGATTCAATGTTGAGGTTCTAAGACCACA 1193
||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||
Sbjct 1168 GAATCTTCTCGTGGAGCTAGCAGAGAAAACAGGGTTCAATGTGGAGGTTCTAAGACCACA 1227
Query 1194 AAAAACAACGGAAATGGCTAAGATTTATCGTTCGTTGAACACGAGCGATGTGATGATCGG 1253
||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1228 AAAGACAACGGAAATGGCCAAGATTTATCGTTCGTTGAACACGAGCGATGTAATGATCGG 1287
Query 1254 TGTACATGGAGCAGCAATGACTCATTTCCTTTTCTTGAAACCGAAAACCGTTTTCATTCA 1313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1288 TGTACATGGAGCAGCAATGACTCATTTCCTTTTCTTGAAACCGAAAACCGTTTTCATTCA 1347
Query 1314 GATCATCCCCTTAGGGACCGATTGGGCGGCAGAGACATACTACGGTGAACCGGCGAAGAA 1373
||||||||| |||||||| || ||||||||||||||||| || || ||||||||||||||
Sbjct 1348 GATCATCCCATTAGGGACGGACTGGGCGGCAGAGACATATTATGGAGAACCGGCGAAGAA 1407
Query 1374 GCTAGGATTGAAGTACATTGGATACAAGATTGCGCCGAAAGAGAGCTCTTTATATGAAGA 1433
|||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1408 GCTAGGATTGAAGTACGTTGGTTACAAGATTGCGCCGAAAGAGAGCTCTTTGTATGAAGA 1467
Query 1434 ATATGGGAAAGATGATCCTATAATCCGAGATCCGGATAGTCTCAACGATAAAGGATGGGA 1493
||||||||||||||| ||| |||||||||||||||||||||| ||||| |||||||||||
Sbjct 1468 ATATGGGAAAGATGACCCTGTAATCCGAGATCCGGATAGTCTAAACGACAAAGGATGGGA 1527
Query 1494 ATATACGAAGAAAATATATCTACAAGGACAAAACGTGAAGCTTGACTTGAGAAGATTCAG 1553
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1528 ATATACGAAGAAAATCTATCTACAAGGACAGAACGTGAAGCTTGACTTGAGAAGATTCAG 1587
Query 1554 AGAAACGTTAACTCGTTCCTATGATTTCTCCATTAGGAGGAGATTTAGAGAAGATTACTT 1613
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1588 AGAAACGTTAACTCGTTCGTATGATTTCTCCATTAGAAGGAGATTTAGAGAAGATTACTT 1647
Query 1614 GTTACATAGAGAAGATTAAGAAGCA-GAAGAAAGTGTTTTTGTAGAGTTTTGAATGACAA 1672
|||||||||||||||||||||| | | || | | |||||||| |||||||||||||||
Sbjct 1648 GTTACATAGAGAAGATTAAGAATCGTGT-GATATTTTTTTTGTAAAGTTTTGAATGACAA 1706
Query 1673 TTAAATT 1679
|||||||
Sbjct 1707 TTAAATT 1713
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82981500885
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5