BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483247
Length=1444
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41460.1 | Symbols: ARP | apurinic endonuclease-redox protei... 599 3e-170
AT3G60950.1 | Symbols: | C2 calcium/lipid-binding endonuclease... 167 3e-40
AT3G61030.1 | Symbols: | Calcium-dependent lipid-binding (CaLB... 167 3e-40
> AT2G41460.1 | Symbols: ARP | apurinic endonuclease-redox protein
| chr2:17285723-17288928 FORWARD LENGTH=1778
Length=1778
Score = 599 bits (324), Expect = 3e-170
Identities = 360/377 (95%), Gaps = 4/377 (1%)
Strand=Plus/Plus
Query 844 GGGCTTATTGTAACTGCTGAATTCGACTCCTTCTATTTGATAAATACTTATGTCCCTAAT 903
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1125 GGGCGTATTGTAACTGCTGAATTCGACTCCTTCTACTTGATAAATACTTATGTCCCTAAT 1184
Query 904 TCCGGAGATGGCTTAAAAAGACTGTCATACAGGATCGAAGAATGGGATCGAACCCTCAGC 963
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 TCCGGAGATGGATTAAAAAGACTGTCATACAGGATCGAAGAATGGGATCGAACCCTCAGC 1244
Query 964 AATCACATCAAAGAGCTGGAAAAGTCTAAGCCTGTAGTCTTGACGGGTGATCTAAATTGC 1023
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1245 AATCACATCAAAGAGCTGGAGAAGTCTAAGCCTGTAGTCTTGACGGGTGATCTAAACTGT 1304
Query 1024 GCTCATGAAGAAATTGACGTCTTCAATCCTGCGGGGAACAAAAGAAGTGCTGGTTTTACA 1083
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1305 GCTCATGAAGAAATTGACATCTTCAATCCTGCGGGGAACAAAAGAAGTGCTGGTTTTACA 1364
Query 1084 ATAGAAGAAAGGCAGTCCTTTGGTGCAAACTTCTTAGCCAAGGGCTTTGTAGATACATTT 1143
|||||||||||||||||||||||||||||||| |||| |||||| ||||||||||| |||
Sbjct 1365 ATAGAAGAAAGGCAGTCCTTTGGTGCAAACTTGTTAGACAAGGGATTTGTAGATACCTTT 1424
Query 1144 AGAAAGCAACATCTTGGTGTTGTCGGTTACACTTATTGGGGTTATCGCCATCCATGGTGG 1203
||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1425 AGAAAACAACATCCTGGTGTTGTCGGTTACACTTATTGGGGTTATCGCCAT----GGTGG 1480
Query 1204 CCGCAAAACCAACAAAG 1220
|||||||||||||||||
Sbjct 1481 CCGCAAAACCAACAAAG 1497
Score = 492 bits (266), Expect = 4e-138
Identities = 382/433 (88%), Gaps = 28/433 (6%)
Strand=Plus/Plus
Query 417 CAAATTCATTCAAAAAGAGGAAGCATCATCGATCATCTCTAGTGAATTTCTGAAAACCAA 476
|||||||| || |||||| ||| ||||||||| ||||||||||||||| |||||||| |
Sbjct 645 CAAATTCAGTC-AAAAGAAGAAACATCATCGACCATCTCTAGTGAATTACTGAAAACTGA 703
Query 477 AGAAATAATCGT-ATCCCCGAGTCAAACCTCAGAACCCTGGGCTGTACTTGCTCATACGA 535
|||||| ||| | |||||||||||||| | ||||| ||| ||||||||||||||| ||
Sbjct 704 AGAAATTATC-TCATCCCCGAGTCAAA-GT--GAACCGTGGACTGTACTTGCTCATAAGA 759
Query 536 AGCCTCAGAAGGACTGGAAAGCTTATAACCCAAAGACAATGAGA---CCCCC-CTACCAG 591
||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||
Sbjct 760 AGCCTCAGAAGGACTGGAAAGCTTACAACCCAAAGACAATGAGACCTCCCCCTCTACCAG 819
Query 592 AGGATAACC-AA---GT----G---TG---T-GAAGGTTAATGGATTGAGAGCATTGTTG 636
||| | ||| || || | || | ||| ||||||||| |||||| |||||||
Sbjct 820 AGGGT-ACCAAATGTGTGAAAGTTATGACTTGGAATGTTAATGGACTGAGAGGATTGTTG 878
Query 637 AAGTTAGAGAGCTTCTCTGCTCTGCAGCTTGCCCAAAGAAAAAATATTGATATCTTGTGC 696
||||| ||||||||||||||||||||||||||||||||| ||||| |||| |||||||||
Sbjct 879 AAGTTTGAGAGCTTCTCTGCTCTGCAGCTTGCCCAAAGAGAAAATTTTGACATCTTGTGC 938
Query 697 TTGCAGGAGACTAAAATCCAGGT-AAAGGATGTTGAGGAAATTAAGAAAACTCTTATTGA 755
||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 939 TTGCAGGAGACTAAACTCCAGGTGAAA-GATGTTGAGGAAATTAAGAAAACTCTTATTGA 997
Query 756 TGGCTATGATCATAGTTTCTGGTCCTGCAGCGTCTCGAAACTTGGCTACTCTGGAACTGC 815
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 998 TGGCTATGATCATAGTTTCTGGTCCTGCAGCGTCTCAAAACTTGGCTACTCTGGAACTGC 1057
Query 816 AATAATCTCACGG 828
|||||||||||||
Sbjct 1058 AATAATCTCACGG 1070
Score = 435 bits (235), Expect = 8e-121
Identities = 331/374 (89%), Gaps = 19/374 (5%)
Strand=Plus/Plus
Query 1 TTTCTGGTGGTGCCTATTAGGAGTTTAAGCGTTGGTTCATCTATCGTTGGTGTTGGAGTA 60
||||||||||||||| |||||||||| || |||||||||||| ||||||| ||||||||
Sbjct 63 TTTCTGGTGGTGCCTCTTAGGAGTTTGAGAGTTGGTTCATCTTTCGTTGGAGTTGGAGTG 122
Query 61 GGAACGAGAAGTGTCAACAAGAGGCTTATGTCAAATGCTACAGTTAAATCTATACCTTTC 120
||||| |||||| ||||||||||||| |||||||||||||||| |||||
Sbjct 123 GGAACAAGAAGTTTCAACAAGAGGCTAATGTCAAATGCTACAG------------CTTTC 170
Query 121 TCTATCAACAACAGCAAGGGAAAGGAGGTACTCAAGATAGTAGGAGCAGCTACTGATCAG 180
|||||||||||||||||| ||||||| |||||||||| ||||||||||| |||||||
Sbjct 171 TCTATCAACAACAGCAAGCGAAAGGA---ACTCAAGATACCAGGAGCAGCTATTGATCAG 227
Query 181 AATTGTCAACAGATGGGAAGTGATAGTGGTAGAGCTGAAATGGGAACTCTTCAAGATGAT 240
|||||||| |||||||||||||||| || ||||| |||||||||||||||||||||||||
Sbjct 228 AATTGTCATCAGATGGGAAGTGATACTGATAGAGATGAAATGGGAACTCTTCAAGATGAT 287
Query 241 CAAAAGGATATCGAGGCGATGACGGTTCAAGAACTTAGAGCCACATTGAGGCAAGAAACT 300
| |||||| || ||||||||||| ||||||||||||||| |||| |||| | ||||||
Sbjct 288 CGAAAGGAAATTGAGGCGATGACTGTTCAAGAACTTAGATCCACGTTGA-G---GAAACT 343
Query 301 TGGGCTACCTGTGAAAGGACGCAAACAAGAACTTATCTCAACTTTACGACTTCATATGGA 360
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 344 TGGGGTACCTGTGAAAGGACGCAAACAAGAACTTATCTCAACTTTACGACTTCATATGGA 403
Query 361 CAGCAATTTACCTG 374
||||||||||||||
Sbjct 404 CAGCAATTTACCTG 417
Score = 193 bits (104), Expect = 5e-48
Identities = 172/201 (86%), Gaps = 19/201 (9%)
Strand=Plus/Plus
Query 1257 GATCATTGCCTCCATTGGCCTTATTCTCAAGCTCTGATTTATTCAAAGTTTCACCATTCC 1316
|||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 1584 GATCATTGCC-CCATTGGCCTTATTCTCAAGCTCTGATTTGTTCAAAATTTCACCATTCC 1642
Query 1317 CAGCtttttttttGGCTAAAGTCTTTAGTAGCTTTTAGGTAGAGATTCACAGGTTTTGTT 1376
||||||||| | |||||||||| ||||| || ||| |||||| ||||| |||||| |
Sbjct 1643 CAGCTTTTT----G-CTAAAGTCTTGAGTAGATTGTAGCTAGAGAGTCACATGTTTTGCT 1697
Query 1377 TCTAGAGAGAGCTTGCTCATGTAAAA-TAT------------CTATCAGTAAACAGGCGC 1423
|||||||||||||||||||||||||| ||| |||||||||||||||| |
Sbjct 1698 TCTAGAGAGAGCTTGCTCATGTAAAAATATGGAATAATATATCTATCAGTAAACAGGCTC 1757
Query 1424 CAAACAATCTGAGTCTTGTCC 1444
|||||||||||||||||||||
Sbjct 1758 CAAACAATCTGAGTCTTGTCC 1778
> AT3G60950.1 | Symbols: | C2 calcium/lipid-binding endonuclease/exonuclease/phosphatase
| chr3:22524475-22530306 FORWARD
LENGTH=2420
Length=2420
Score = 167 bits (90), Expect = 3e-40
Identities = 106/113 (94%), Gaps = 4/113 (4%)
Strand=Plus/Plus
Query 60 AGGAACGAGAAGTGTCAACAAGAGGCTTATGTCAAATGCTACAGTTAAATCTATACCTTT 119
|||||| |||||| |||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1099 AGGAACAAGAAGTTTCAACAAG-GGCTTATGTCAAATGCTACAGTTAAATCTGTACCTTT 1157
Query 120 CTCTATCAACAACAGCAAGGGAAAGGAGGTACTCAAGATAGTAGGAGCAGCTA 172
||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1158 CTCTATCAACAACAGCAAGGGAAAGGA---ACTCAAGATAGTAGGAGCAGCTA 1207
Score = 100 bits (54), Expect = 3e-20
Identities = 57/58 (98%), Gaps = 1/58 (2%)
Strand=Plus/Plus
Query 318 GACGCAAACAAGAACTTATCTCAACTTTACGACTTCATATGGACAGCAATTT-ACCTG 374
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1342 GACGCAAACAAGAACTTATCTCAACTTTACGACTTCATATGGACAGCAATTTTACCTG 1399
> AT3G61030.1 | Symbols: | Calcium-dependent lipid-binding (CaLB
domain) family protein | chr3:22585655-22590853 FORWARD LENGTH=1843
Length=1843
Score = 167 bits (90), Expect = 3e-40
Identities = 106/113 (94%), Gaps = 4/113 (4%)
Strand=Plus/Plus
Query 60 AGGAACGAGAAGTGTCAACAAGAGGCTTATGTCAAATGCTACAGTTAAATCTATACCTTT 119
|||||| |||||| |||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1078 AGGAACAAGAAGTTTCAACAAG-GGCTTATGTCAAATGCTACAGTTAAATCTGTACCTTT 1136
Query 120 CTCTATCAACAACAGCAAGGGAAAGGAGGTACTCAAGATAGTAGGAGCAGCTA 172
||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1137 CTCTATCAACAACAGCAAGGGAAAGGA---ACTCAAGATAGTAGGAGCAGCTA 1186
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71184372810
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5