BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483250
Length=1639
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41705.1 | Symbols: | camphor resistance CrcB family protei... 2418 0.0
> AT2G41705.1 | Symbols: | camphor resistance CrcB family protein
| chr2:17397274-17400081 FORWARD LENGTH=1837
Length=1837
Score = 2418 bits (1309), Expect = 0.0
Identities = 1497/1586 (94%), Gaps = 20/1586 (1%)
Strand=Plus/Plus
Query 1 TTAGCTCGATTTCTCCGCCGGCGACTTTT-GGATCAAATTTGATTCTTCACGATTAAGAT 59
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 163 TTAGCTCGATTTCTCCGCCGGCGACTTTTGGGATCAAATTTGATTCTTCACGATTAAGAT 222
Query 60 TGAATTCGCCATTAGGTAAAGC-TCCTTTAAGAAATAC-TGTGTTTTGGCAACAAAGCCT 117
||||||||||||||||| ||| || |||||| ||| | | || |||||| |||| ||||
Sbjct 223 TGAATTCGCCATTAGGTGGAGCATCATTTAAG-AAT-CTTATGCTTTGGCTACAACGCCT 280
Query 118 ATGGATTCCGGTCAAAGCCGCGTAGAACAACCCTACCGAA-CCAAGTCTTTTAGTCGGGA 176
|||||| | ||||||||| || ||| |||| || | || |||||||||||||||||||
Sbjct 281 ATGGATACGGGTCAAAGCAGCATAG---AACCTTATC-AAGCCAAGTCTTTTAGTCGGGA 336
Query 177 GAGCAGTGTAGCCTCTTCTTTAAGCTTATCACGTAGTTTGCCTCACCTAATTGACAATGA 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 337 GAGCAGTGTAGCCTCTTCTTTAAGCTTATCACGTAGTTTGCCTCACCTAATTGACAATGA 396
Query 237 CGTCGATAGTGAGAGTGTCTCAGAGGCTGGGGATATTGGTGATCGCTCACTTCGGAGAAG 296
||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||
Sbjct 397 CGTCGATAGTGAGAGTGTCTCAGAGGCAGGGGATATTGGGGACCGCTCACTTCGGAGAAG 456
Query 297 GCATAGTGCTGGTCGAAGCAGCCGTTTGTCTGCCGATGATTTGATGGAACAAGGGACTCA 356
||||||||||||| ||||||||||||||||||| |||||||| || ||||||||||||||
Sbjct 457 GCATAGTGCTGGTAGAAGCAGCCGTTTGTCTGCTGATGATTTTATAGAACAAGGGACTCA 516
Query 357 TGATACTTCTCGTCAAGAACAAGATGTATTACATGATCTTCGAGCTTTCAACACAGCTTC 416
||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||
Sbjct 517 TGATACTTCTCGTCAAGAACAAGATATATTACATGACCTTCGAGCTTTCAACACTGCTTC 576
Query 417 TGTTAATAAACCTTTGCCTGAGGATATAACAGCATCTCCTTTACCGACCAAGTCACTCTT 476
|| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 577 CGTAAATAAAACTTTGCCTGAGGACATAACAGCATCTCCTTTACCGACCAAGTCACTCTT 636
Query 477 GTCACCTGAGATAAACAAC-CCGGAAAAGGAGGAAGAGCGCGTGTTACCAAAGTCCTTGG 535
||||||||| ||||||||| ||||||| |||||||||||| |||||||||||||||||||
Sbjct 637 GTCACCTGAAATAAACAACTCCGGAAA-GGAGGAAGAGCGAGTGTTACCAAAGTCCTTGG 695
Query 536 ATTACATATCATGTCTAATTCATTTGGCTGTTTTTGGGATTTTTGGGGCCATTACGAGAT 595
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 696 AGTACATATCATGCCTAATTCATTTGGCTGTTTTTGGGATTTTTGGGGCCATTACGAGAT 755
Query 596 ATTTGCTGCAGAAATTGTTTGGACCAACTGGTGCTCGAGTAACAAGTGATGGAAGCATCT 655
|||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 756 ATTTGCTGCAAAAATTGTTTGGGCCAACTGGTGCTCGAGTAACAAGTGATGGGAGCATCT 815
Query 656 TGTACCTTGATCTTCCCTCCAACATGGTAGGATCATTCTTGATGGGTTGGTTTGGTGTCG 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 816 TGTACCTTGATCTTCCCTCCAACATGGTAGGATCATTCTTGATGGGTTGGTTTGGCGTTG 875
Query 716 TATTCAAAGCAGATATAGCAAGAGTTTCTGAATTTGTGGCGATAGGATTATCGACTGGTT 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 876 TATTCAAAGCAGATATAGCAAGAGTTTCTGAATTTGTGGCGATAGGATTATCGACTGGTT 935
Query 776 ATTTGGGGAGCCTGACAACATTCAGCGGTTGGAACCAGAAAATGCTGGATCTTAGTGCTG 835
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 936 ATTTGGGGAGTCTGACAACATTCAGCGGTTGGAACCAGAAAATGCTGGATCTTAGTGCTG 995
Query 836 ATGGTCAATGGGTATATGCCCTGCTTGGCTTTCTT-TTAGGATTGTTTCTCACGTCATAC 894
||||||||||||| ||||| ||||||||||| || ||||||||||||||||||||||||
Sbjct 996 ATGGTCAATGGGTGTATGCTGTGCTTGGCTTT-TTATTAGGATTGTTTCTCACGTCATAC 1054
Query 895 TCCATAATTCTGGGAGTGGAAACGGCCAAAGGGTTTAAATGGCTTCTTCATAGAAGAGCT 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1055 TCCATAATTCTGGGAGTGGAAACGGCCAAAGGGTTTAAATGGCTTCTTCATAGAAGAGCT 1114
Query 955 TCTTCTGAGGAAAAACACTC-TTGTCTTAAGGTTAACACCTTCCAGAGCCATATTGTGTC 1013
||||||||||| ||| | | |||||||||||||||||||||||||||||||||||||||
Sbjct 1115 TCTTCTGAGGATAAATTC-CATTGTCTTAAGGTTAACACCTTCCAGAGCCATATTGTGTC 1173
Query 1014 TATGACCCTGATGCTTCTGTTGCTTGTGGCTTTACTCACTGCGAGTTCCATTCTGCTTGT 1073
| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1174 TCTGACCCTGATGCTTCTGTTGCTTGTGGCTTTACTCACTGCCAGTTCCATACTGCTTGT 1233
Query 1074 GAAAGAGTTTGACAAAGGAACAAGCGAGGCTCAACTATGGTTAGGTTGCTTAGTTGCAGC 1133
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1234 GAAAGAGTTTGACAAAGGAACAAGCGAGGCTCAGCTATGGTTTGGTTGCTTAGTTGCAGC 1293
Query 1134 CCCTGGTGTCTGGCTCAGATGGTTCTTAGCCCGACTCAATGGACGTGGACTGGGAAAAGA 1193
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1294 CCCTGGTGTCTGGCTCAGATGGTTCTTAGCCCGACTCAATGGACGTGGGCTGGGAAAGGA 1353
Query 1194 TAGACAAAACTTGAGGTGGGTCCCATTTGGCACCCTCATTGCAAATGTAGCTGCAGCTTG 1253
||| ||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1354 TAGTCAAAATTTGAGATGGGTCCCATTTGGCACCCTCATTGCAAATGTAGTTGCAGCTTG 1413
Query 1254 CGTTATGGCAGCATTGGCCAC-TGTAAAGAAATCGGTGAACACGAGAACATGTAACACGG 1312
|||||||||||||||||| || | | ||||||||||||||||||||||||||||||||||
Sbjct 1414 CGTTATGGCAGCATTGGCTACCT-TGAAGAAATCGGTGAACACGAGAACATGTAACACGG 1472
Query 1313 TTGCTTCGAGCATACAGTTTGGTCTGTTGGGATGTCTGAGCACAGTTTCCACCTTCATGG 1372
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1473 TTGCTTCGAGCATACAGTTTGGTCTGTTGGGATGTCTGAGCACAGTTTCGACCTTCATGG 1532
Query 1373 CTGAGTTCAATGCGATGAGAGAAAGTGATTACCCATGGAGAGCCTATGCGTATGCATCTT 1432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1533 CTGAGTTCAATGCGATGAGAGAAAGTGATTACCCATGGAGAGCCTATGCGTATGCATCTT 1592
Query 1433 TCACCATTGCAGTTTCTTTTGCGATTGGAACTGTTATATACTCAGTCCCTGTCTGGGTAG 1492
| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1593 TTACCATTGTGGTTTCTTTTGCGATTGGAACTATTATATACTCAGTCCCTGTCTGGGTAA 1652
Query 1493 TAGGGTTCAGTTAGTTGTATCAAAACTAGATAAGTCTTGTGTAGATGATGTAA-AGATAC 1551
|||| ||||||||||||||||||| |||||||||||||||| ||||||||| | | ||||
Sbjct 1653 TAGGATTCAGTTAGTTGTATCAAAGCTAGATAAGTCTTGTGCAGATGATGTGATA-ATAC 1711
Query 1552 ATATTTGTAACATTTGGTAAAGATGA 1577
||| | ||||||||||||| ||||||
Sbjct 1712 ATAGTCGTAACATTTGGTAGAGATGA 1737
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80973479085
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5