BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483251
Length=1679
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41710.3 | Symbols: | Integrase-type DNA-binding superfamil... 2089 0.0
> AT2G41710.3 | Symbols: | Integrase-type DNA-binding superfamily
protein | chr2:17400022-17403050 REVERSE LENGTH=1776
Length=1776
Score = 2089 bits (1131), Expect = 0.0
Identities = 1260/1318 (96%), Gaps = 25/1318 (2%)
Strand=Plus/Plus
Query 368 AGACATAGATGGACAGGTCGTTATGAAGCTCACCTTTGGGATAAGAGTACCTGGAACCAA 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 AGACATAGATGGACAGGTCGTTATGAAGCTCACCTTTGGGATAAGAGTACCTGGAACCAA 537
Query 428 AATCAGAACAAGAAGGGAAAACAAGTTTATCTAGGAGCATATGATGATGAAGAGGCTGCT 487
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 AACCAGAACAAGAAGGGAAAACAAGTTTATCTAGGAGCATATGATGATGAAGAGGCTGCT 597
Query 488 GCTCGAGCTTACGACCTTGCTGCCTTAAAGTATTGGGGCCCTGGGACACTTATAAATTTT 547
||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 598 GCTAGAGCTTACGACCTTGCTGCCTTAAAATATTGGGGTCCTGGGACACTTATAAATTTT 657
Query 548 CCGGTGACTGACTATACCAGGGATTTAGAAGAAATGCAAAATCTCTCAAGGGAAGAATAC 607
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 CCGGTGACTGATTATACCAGGGATTTAGAAGAAATGCAAAATCTCTCAAGGGAAGAATAC 717
Query 608 CTTGCGTCTCTACGTAGATATCCCTTTGGCAGAAAAAGCAGCGGTTTCTCAAGGGGAATA 667
||||| ||| | || | | |||||||||||||||||||| |||||||||
Sbjct 718 CTTGC--ATCT---T---TA---C----GTAGAAAAAGCAGCGGTTTCTCTAGGGGAATA 762
Query 668 GCGAAATATCGGGGACTTCAAAGCCGATGGGACGCATCAGCCAGTCGTATGCCTGGACCT 727
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 763 GCGAAATATCGTGGACTTCAAAGCCGATGGGACGCATCAGCCAGTCGTATGCCTGGACCT 822
Query 728 GAATACTTCAGTAACATTCATTACGGGGCAGGTGATGATCGAGGAACAGAAGGTGACTTT 787
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 823 GAATACTTCAGTAACATTCATTACGGGGCAGGTGATGATCGTGGAACAGAAGGTGACTTT 882
Query 788 CTAGGTAGCTTTTGTCTGGAAAGAAAGATTGATCTAACAGGATACATAAAGTGGTGGGGA 847
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 883 CTAGGTAGCTTTTGTCTGGAAAGAAAGATTGATCTAACAGGATACATAAAGTGGTGGGGA 942
Query 848 GTCAACAAGACCCGTCAACCAGAATCTTCATCAAAAGCATCAGAGGATGCAAATGTCGAA 907
| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 943 GCCAACAAGAACCGTCAACCAGAATCTTCATCAAAAGCATCAGAGGATGCAAACGTCGAA 1002
Query 908 GATGCTGGTACTGAGCTTAAAACACTGGAACACACATCCCAGGCAACAGAACCATACAAG 967
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1003 GATGCTGGTACTGAGCTTAAAACACTGGAACACACATCCCATGCAACAGAACCATACAAG 1062
Query 968 GCGCCAAACCTTGGTGTCCTTCGTGGAACTCAGAGAAAAGAAAAAGAAATATCATCACCA 1027
|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1063 GCGCCAAACCTTGGCGTCCTTTGTGGAACTCAGAGAAAAGAAAAAGAAATATCATCACCA 1122
Query 1028 TCAAGCTCTTCTGCTTTAAGCATCTTGTCTCAGTCGCCTGCCTTCAAGAGCCTAGAGGAG 1087
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1123 TCAAGCTCTTCTGCTTTAAGCATCTTGTCTCAGTCGCCTGCCTTCAAGAGCCTAGAGGAG 1182
Query 1088 AAAGTGCTGAAGATCCAAGAAAGCTGCAATAATGAAAACGATGAGAATGCAAATCGTAAC 1147
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1183 AAAGTGTTGAAGATCCAAGAAAGCTGCAATAATGAAAACGATGAGAATGCAAACCGTAAC 1242
Query 1148 ATCATCAATATGGAGAAGAATCACGGCAAGGCAATAGAGAAACCAGTTGTGAGTCATGGA 1207
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1243 ATCATCAATATGGAGAAGAATAACGGCAAGGCAATAGAGAAACCAGTTGTGAGTCATGGA 1302
Query 1208 GTTGCTTTAGGCGGTGCTGCTG-TGTTGTCTCTTCAGAAAAGCATGTACCCACTTACCTC 1266
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1303 GTTGCTTTAGGCGGTGCTGCTGCT-TTGTCTCTTCAGAAAAGCATGTACCCACTTACCTC 1361
Query 1267 TCTCTTAACTGCTCCATTGCTCACCAACTACAATACATTGGATCCTCTTGCAGACCCTAT 1326
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1362 TCTCTTAACGGCTCCATTGCTCACCAACTACAATACATTGGATCCTCTTGCAGACCCTAT 1421
Query 1327 TCTCTGGACACCATTTCTTCCTTCAGGATCCTCTCATACTTCAGAGGTGACAAAGACAGA 1386
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1422 TCTCTGGACACCATTTCTTCCTTCAGGATCCTCTCTTACTTCAGAGGTGACAAAGACAGA 1481
Query 1387 GACCAGCTGTTCCACGTACAGCTACATCCCACAAGAGAAATGAGCCGTTCCCTTTAGACT 1446
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1482 GACCAGCTGTTCCACGTACAGCTACCTCCCACAAGAGAAATGAGCCGTTCCCTTTAGACT 1541
Query 1447 TTATGTATGTCAGATTCTCCTTTGGTGAGATGAATTTGTCGACTT-ACCATCTGTTTTTG 1505
||||||||||||||||||||||| ||||||||||| |||||||| || |||| ||| |
Sbjct 1542 TTATGTATGTCAGATTCTCCTTTTTTGAGATGAATTCGTCGACTTGAC-ATCTCTTT--G 1598
Query 1506 TCTCTTT-ATGGAGAGGAAGTTGGGAGAAGTGTGACAATGGTCTGAAGCAGGAATGTACA 1564
||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1599 TCTCTTTTATGGAGAAAAAGTTGGGAAAAGTGTGACAATGGTCTGAAGCAGGAATGTACA 1658
Query 1565 GGTTTTGTTAGTGGTTGTGtttttttttt-C-AGTGTGGAATATAGAATCATCATAATTT 1622
||||||||||||||||||||||||||||| | |||||||||||||||||||| ||| |||
Sbjct 1659 GGTTTTGTTAGTGGTTGTGTTTTTTTTTTTCCAGTGTGGAATATAGAATCATGATATTTT 1718
Query 1623 GTGTAAAACAGAAAAA-GTTATCATTATAGTATAAAAGTTTGCTCTTAATACTTCTGC 1679
|||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||
Sbjct 1719 GTGTAAAACAGAAAAAAGTTATCATTATAGTATAGAAGTTTGCTCTTAATATTTCTGC 1776
Score = 540 bits (292), Expect = 2e-152
Identities = 350/375 (93%), Gaps = 15/375 (4%)
Strand=Plus/Plus
Query 1 AAAAA-GAAAGAGTCAAAGTTGAATTTtctcagctctcactctctttctctctctctTTG 59
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 9 AAAAAGGAAAGAGTCAAAGTTGAATTTTCTCAGCTCTCACTCTCTTTTTCTCTCTCTTTA 68
Query 60 CTTCTACTGTATC---AAGCTCGGTTTTGCGTAGCCATAGTGCGTCTAGGGTTTGGTTGG 116
||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 69 CTTCTACTGTATCAAGAAGCTCCGTTTTGCTTAGCCATAGTGCGTCTAGGGTTTGGTTGG 128
Query 117 -GGG-AGAAGGTTCCGATCATGGCGTCGGTGTCGTCGTCGGATCAAGGACCTAAGACAGA 174
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 129 TGGGAAGAAGGTTCCGATCATGGCGTCGGTGTCGTCGTCGGATCAAGGACCTAAGACAGA 188
Query 175 AGCAGGATGTAGCGGCggaggaggaggaggaggaggagagagTTCAGAGACAGTGGCGGC 234
||||||||||||||||||||||||||||| || || | | ||||||||||||||
Sbjct 189 AGCAGGATGTAGCGGCGGAGGAGGAGGAG-AG-AGC------T-CGGAGACAGTGGCGGC 239
Query 235 GAGTGATCAGATGTTGTTGTATAGAGGTTTTAAGAAGGCGAAGAAGGAGAGAGGTTGTAC 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GAGTGATCAGATGTTGTTGTATAGAGGTTTTAAGAAGGCGAAGAAGGAGAGAGGTTGTAC 299
Query 295 AGCTAAAGAGCGTATTAGTAAAATGCCGCCGTGTACTGCTGGGAAAAGGAGTTCCATATA 354
|||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 300 AGCTAAGGAGCGTATTAGTAAAATGCCTCCGTGCACTGCTGGGAAAAGGAGTTCCATATA 359
Query 355 CCGCGGAGTCACCAG 369
||| |||||||||||
Sbjct 360 CCGGGGAGTCACCAG 374
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82981500885
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5