BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483255
Length=447
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24640.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 588 2e-167
AT2G41730.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 568 2e-161
> AT5G24640.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G41730.1);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr5:8436376-8436862 FORWARD LENGTH=487
Length=487
Score = 588 bits (318), Expect = 2e-167
Identities = 408/451 (90%), Gaps = 7/451 (2%)
Strand=Plus/Plus
Query 1 ATCAAGTCTCAAATCAAAATAAGCAAACATGAAGAGTGAAGGTCGTCACCAAGGCATCGT 60
||||||||||||||| ||||||| |||||||||||||||||||||||| |||||| ||||
Sbjct 1 ATCAAGTCTCAAATCTAAATAAGTAAACATGAAGAGTGAAGGTCGTCATCAAGGCGTCGT 60
Query 61 AAGAACAGGAATGATTCATCCGCGGGGGTTTAATCCGCGAAC-CACCAACCGGCTCGATT 119
||| ||||||||||||||||||||||| |||||||| || || ||||||||| |||||||
Sbjct 61 AAGGACAGGAATGATTCATCCGCGGGGCTTTAATCCTCG-ACACACCAACCGACTCGATT 119
Query 120 CACCACCAGCTTTTGGAGATTTTACCAAAGCGCCATCAAAGACTACCAACCATTCAAATA 179
||||||||| ||||||||||||||||||| || | ||||||||||||||||||||||||
Sbjct 120 CACCACCAGTTTTTGGAGATTTTACCAAAATGCAACCAAAGACTACCAACCATTCAAATA 179
Query 180 TCACCAAAGAAAGTGAGCGGTCCAAGTACAGTAATTGCCATGTGTTGCCGGCTATCAAGT 239
||| | |||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 180 TCATCGGAGAAAGTGAGCGGTCCAAGTACAGTAATTGTCATGTGTCGCCGGCTATCAAGT 239
Query 240 CGGGCCACAAATCTAATGGTCGCCGTAAGCTACAACCGACAAGTTGGTGGAGTGAGGATA 299
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CGGGCCATAAATCTAAGGGTCGCCGTAAGCTACAACCGACAAGTTGGTGGAGTGAGGATA 299
Query 300 AGCTAGATCGGCTCATTGGGTCAGACTCGTCCTCTGCTAAAGATATTTTGGATACATTAT 359
||||||| |||||||| ||||| || || ||||||||||| ||||||||||||| ||||
Sbjct 300 AGCTAGACCGGCTCATCGGGTCGGATTCATCCTCTGCTAAGGATATTTTGGATATGTTAT 359
Query 360 GTGGTGAAGATGATGATGAACATTAAT--TT-TCATCATGATTTAAATCATCTCATTTGA 416
|| |||||||| ||||||| |||||| || |||| |||||| || |||||| ||| |
Sbjct 360 GTAGTGAAGATCATGATGAGTATTAATAATTATCATGATGATT-AAC-CATCTCGTTTAA 417
Query 417 GATGTATGAAGATTATTGTTTTTTATTTTAT 447
|||||||||||||||||||||||||||||||
Sbjct 418 GATGTATGAAGATTATTGTTTTTTATTTTAT 448
> AT2G41730.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G24640.1);
Has 25 Blast hits to 25 proteins in 5 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:17409463-17409937
FORWARD LENGTH=475
Length=475
Score = 568 bits (307), Expect = 2e-161
Identities = 361/387 (93%), Gaps = 3/387 (1%)
Strand=Plus/Plus
Query 4 AAGTCTCAAATCAAAATAAGCAAACATGAAGAGTGAAGGTCGTCACCAAGGCATCGTAAG 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAGTCTCAAATCAAAATAAGCAAACATGAAGAGTGAAGGTCGTCACCAAGGCATCGTAAG 60
Query 64 AACAGGAATGATTCATCCGCGGGGGTTTAATCCGCGAACCACC---AACCGGCTCGATTC 120
|| |||||||||||||||||||| |||||||||||| ||||| ||||||||||||||
Sbjct 61 GACGGGAATGATTCATCCGCGGGGCTTTAATCCGCGACCCACCTCCAACCGGCTCGATTC 120
Query 121 ACCACCAGCTTTTGGAGATTTTACCAAAGCGCCATCAAAGACTACCAACCATTCAAATAT 180
|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 121 ACCACCAGCTTTTGGAGATTTTACAAAAGTTCCATCAAAGACTACCAACCATTCAAATAC 180
Query 181 CACCAAAGAAAGTGAGCGGTCCAAGTACAGTAATTGCCATGTGTTGCCGGCTATCAAGTC 240
|||| |||||| |||||||||||||||||| |||| || |||| ||| |||||||||||
Sbjct 181 CACCGGAGAAAGCGAGCGGTCCAAGTACAGTCATTGTCACGTGTCGCCAGCTATCAAGTC 240
Query 241 GGGCCACAAATCTAATGGTCGCCGTAAGCTACAACCGACAAGTTGGTGGAGTGAGGATAA 300
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 241 GGGCCACAAATCTAAGGGTCGCCGTAAGCTACAACCTACAAGTTGGTGGAGTGAGGATAA 300
Query 301 GCTAGATCGGCTCATTGGGTCAGACTCGTCCTCTGCTAAAGATATTTTGGATACATTATG 360
|||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 301 GCTAGACCGGCTCATCGGGTCGGACTCGTCCTCTGCTAAAGATATTTTGGATACATTATG 360
Query 361 TGGTGAAGATGATGATGAACATTAATT 387
|||||||||| |||||||||||| |||
Sbjct 361 TGGTGAAGATCATGATGAACATTGATT 387
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21263257827
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5