BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483257
Length=3600
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41740.1 | Symbols: VLN2, ATVLN2 | villin 2 | chr2:17410715-... 3277 0.0
AT3G57410.1 | Symbols: VLN3, ATVLN3 | villin 3 | chr3:21243136-... 2095 0.0
> AT2G41740.1 | Symbols: VLN2, ATVLN2 | villin 2 | chr2:17410715-17417740
REVERSE LENGTH=3541
Length=3541
Score = 3277 bits (1774), Expect = 0.0
Identities = 2009/2120 (95%), Gaps = 26/2120 (1%)
Strand=Plus/Plus
Query 87 AAAAAGACAGCTCACAACCTCTTTTCAATTATTCAA-TTAGCttttttttttctttcctt 145
||||| |||||||||||||||||||||||||||||| ||||| ||||||| || || | |
Sbjct 155 AAAAACACAGCTCACAACCTCTTTTCAATTATTCAATTTAGC-TTTTTTTCTC-TT-C-T 210
Query 146 ctcttcttcatcttccctcgtcttctttgccagttcttcttcttcacctttcgtcgtttt 205
|||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 211 -TCTTCTTCATCTTCCCTCGTCTTCTTTGCCAG---TTCTTCTTCATCTTTCGTCGTTTT 266
Query 206 cttAGTGCCACCCAAAGATCTTGGTGCAGGTTCATTGGCGTCTCTAGTGTATAAATTTTC 265
|||||||||||||||||||||| |||||||||||||||||| | |||| ||||||||||
Sbjct 267 CTTAGTGCCACCCAAAGATCTTCGTGCAGGTTCATTGGCGTTTGTAGTACATAAATTTTC 326
Query 266 ACTCACACACACaaaaaaaaaaaaaaaGGATTTGACTGTTATACAAAATGTCTACCAAAG 325
| | |||||| | ||||| |||||||||||||||||| |||||| || ||||
Sbjct 327 -C-CTGACACAC------AGAAAAAGAGGATTTGACTGTTATAC--AATGTCAACAAAAG 376
Query 326 TGCTGGATCCTGCATTTCAAGGAGCTGGTCAGAAACCAGGGACTGAAATCTGGAGAATCG 385
|| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 377 TGTTGGATCCTGCATTTCAAGGAGCTGGCCAGAAACCAGGGACTGAAATCTGGAGAATTG 436
Query 386 AGAATTTCGAGGTAGTTCCAGTACCAAAGTCTGAGCATGGAAAGTTCTATATGGGAGATA 445
||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 437 AGAATTTTGAGGCAGTTCCTGTACCAAAGTCTGAGCATGGAAAGTTCTATATGGGAGATA 496
Query 446 CTTACATTGTCTTGCAGACAACACAGAATAAGGGGGGTGCTTATTTGTTTGATATACATT 505
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 497 CTTACATTGTCTTGCAGACAACACAGAATAAAGGGGGTGCTTATTTGTTTGATATACATT 556
Query 506 TCTGGATTGGTAAAGATACAAGCCAGGATGAAGCTGGAACAGCAGCTGTTAAAACAGTGG 565
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 557 TCTGGATTGGTAAAGATACAAGCCAGGATGAAGCTGGAACAGCAGCTGTTAAAACAGTTG 616
Query 566 AACTCGATGCAGTTCTTGGAGGCCGTGCTATCCAACACCGGGAACTTCAGGGTCATGAAT 625
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 617 AACTCGATGCAGTTCTTGGAGGCCGTGCTGTCCAACACCGGGAAATTCAGGGTCATGAAT 676
Query 626 CTGACAAGTTCTTGTCTTACTTCAAGCCATGTATAATTCCGC-TAGAGGGTGGTGTTGCG 684
||||||| |||||||||||||||||||||||||| || || | |||||||||||||||||
Sbjct 677 CTGACAAATTCTTGTCTTACTTCAAGCCATGTATTATACC-CTTAGAGGGTGGTGTTGCG 735
Query 685 TCTGGTTTCAAAACACCTGAAGAACAAGTGTTTGAGACCCGGTTATATACTTGCAAAGGA 744
||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||
Sbjct 736 TCTGGTTTCAAAACAGTTGAAGAAGAGGTGTTTGAGACCCGGTTATATACTTGCAAAGGA 795
Query 745 AAACGTGCTATTCGTTTGAAGCAGGTTCCTTTTGCCCGCTCATCACTGAATCATGATGAT 804
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 796 AAACGTGCAATCCGTTTGAAGCAGGTTCCTTTTGCCCGCTCATCACTGAATCATGATGAT 855
Query 805 GTATTTATCTTGGACACCGAGGAAAAGATCTATCAGTTCAATGGTGCAAATTCAAACATT 864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 856 GTATTTATCTTGGACACCGAGGAAAAGATCTATCAGTTCAATGGTGCAAATTCAAACATT 915
Query 865 CAGGAGAGAGCCAAAGCTTTGGAAGTCGTTCAGTATTTAAAAGACAAGTATCATGAAGGA 924
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 916 CAGGAGAGAGCCAAAGCTTTGGAAGTCGTTCAGTATTTAAAAGACAAGTATCACGAAGGA 975
Query 925 ACTTGTGATGTTGCGATTGTTGATGATGGGAAATTAGATACAGAATCAGATTCTGGTGCA 984
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 976 ACTTGTGATGTTGCGATTGTTGATGACGGAAAATTAGATACAGAATCAGATTCTGGTGCA 1035
Query 985 TTTTGGGTCCTCTTTGGTGGTTTTGCTCCTATCGGAAGGAAAGTTGCCAATGATGATGAC 1044
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1036 TTTTGGGTCCTCTTTGGTGGTTTTGCTCCAATCGGAAGGAAAGTTGCCAATGATGATGAC 1095
Query 1045 ATTATCCCGGAGTCAACTCCACCTAAGCTTTATTGCACCACTGATGGTAAGATAGAACCT 1104
||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 1096 ATTGTCCCGGAGTCAACTCCACCTAAGCTTTATTGCATCACTGATGGTAAGATGGAACCA 1155
Query 1105 ATTGACGGTGATTTATCCAAATCTATGCTGGAAAACACCAAATGTTACCTCTTGGACTGT 1164
|| |||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1156 ATAGACGGTGACCTATCCAAATCTATGCTGGAAAACACTAAATGCTACCTCTTGGACTGT 1215
Query 1165 GGTGCTGAGGTATTTATCTGGGTTGGCCGTGTCACTCAAGTGGATGAGAGGAAAGCTGCT 1224
|| |||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1216 GGCGCTGAGATATATATCTGGGTTGGCCGTGTCACTCAAGTAGATGAGAGGAAAGCTGCT 1275
Query 1225 AGT-AATTCTGCTGAGGAATTCCTTGCTAGTGAAAATAGGCCAATTGCAACACGCGTTAC 1283
||| ||| |||||||||||||||||||||||||||||||||||| ||||||| || ||
Sbjct 1276 AGTCAAT-CTGCTGAGGAATTCCTTGCTAGTGAAAATAGGCCAAAGGCAACACATGTAAC 1334
Query 1284 TCGTGTTATCCAAGGTTATGAGTCCCATTCTTTCAAGTCTAACTTTGACTCTTGGCCATC 1343
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1335 TCGTGTAATCCAAGGTTATGAGTCCCATTCTTTCAAGTCTAACTTTGACTCTTGGCCATC 1394
Query 1344 AGGCTCGGCCACTCCTGGTAACGAAGAAGGACGAGGAAAAGTCGCTGCTTTACTGAAGCA 1403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1395 AGGCTCGGCCACTCCTGGTAACGAAGAAGGACGAGGAAAAGTCGCTGCTTTACTGAAGCA 1454
Query 1404 ACAAGGTGTTGGGCTCAAGGGTATTGCGAAAAGTGCACCAGTGAATGAGGATATTCCACC 1463
|||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1455 ACAAGGCGTTGGGCTCAAGGGCATTGCAAAAAGTGCACCAGTGAATGAGGATATTCCACC 1514
Query 1464 TCTGCTTGAAGGTGGTGGAAAGTTGGAGGTTTGGTACGTTAATGGTAAAGCCAAGACTCT 1523
|||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 1515 TCTGCTTGAAAGTGGTGGAAAATTGGAGGTTTGGTACGTTAATGGTAAAGTCAAGACTCC 1574
Query 1524 GTTACCTAAAGAAGATATTGGCAAGCTCTATTCTGGGGACTGCTATTTGGTCCTTTATAC 1583
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1575 CTTACCTAAAGAAGATATTGGAAAGCTCTATTCTGGGGACTGCTATTTGGTCCTTTATAC 1634
Query 1584 CTATCATTCTGGGGAGAGGAAAGACGAATATTTCTTGTGTTGTTGGTTTGGAAAGAAAAG 1643
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1635 CTATCATTCTGGGGAAAGGAAAGACGAATATTTCTTGAGTTGTTGGTTTGGAAAGAAAAG 1694
Query 1644 CATTCAGGAGGACCAAGATACAGCAATTCGACTGGCGAATACAATGTCAAACTCTTTAAA 1703
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1695 CATTCCGGAGGACCAAGATACAGCAATTCGACTGGCGAATACAATGTCAAACTCGTTAAA 1754
Query 1704 AGGAAGACCTGTGCAGGGGCGTATATACGAGGGTAAAGAGCCTCCACAATTTGTTGCCCT 1763
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1755 AGGAAGACCTGTGCAGGGCCGTATATACGAGGGTAAAGAGCCTCCACAATTTGTTGCCCT 1814
Query 1764 TTTTCAACCTATGGTGGTCCTAAAGGGTGGTTTGAGCTCTGGGTACAAAAACAGTGTGGG 1823
||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||
Sbjct 1815 TTTTCAACCTATGGTGGTCTTAAAGGGTGGTTTGAGCTCTGGGTACAAAAGCAGTATGGG 1874
Query 1824 AGAGG--G-GTCAACAGATGAAACCTACACGCCAGAATCAATTGCACTAATTCAAGTATC 1880
|||| | ||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 1875 AGAGTCAGAGTCAACAGACGAAACCTACACGCCAGAATCAATTGCACTAGTTCAAGTATC 1934
Query 1881 TGGAACCGGAGTTCACAATTATAAAGCTGTGCAAGTTGAATTGGTGGCAACATCTTTGAA 1940
||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||
Sbjct 1935 TGGAACCGGAGTTCACAATAATAAGGCTGTGCAAGTTGAAACGGTGGCAACATCTTTGAA 1994
Query 1941 CTCTTATGAGTGCTTCCTTCTGCAATCTGGTACTTCCATGTTCCTTTGGCATGGAAATCA 2000
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1995 CTCTTATGAGTGCTTCCTTCTGCAATCTGGTACTTCCATGTTCCTTTGGCATGGAAATCA 2054
Query 2001 AAGTACGCATGAACAGCTAGAACTGGCCACTAAAGTTGCTGAATTCTTGAAGCCTGGGAG 2060
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2055 AAGTACGCATGAACAGCTAGAACTGGCCACTAAAGTTGCTGAATTCTTGAAGCCCGGGAT 2114
Query 2061 TACTCTCAAGCATGCCAAAGAAGGAACGGAGAGCTCAACCTTTTGGTTTGCACTTGGGGG 2120
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2115 TACTCTCAAGCATGCCAAAGAAGGAACAGAGAGCTCAACCTTTTGGTTTGCACTTGGGGG 2174
Query 2121 AAAACAGAATTTCACCAGCAAGAAGGCTTCCTCTGAGACTATCAGGGATCCTCACTTATT 2180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2175 AAAACAGAATTTCACCAGCAAGAAGGCTTCCTCTGAGACGATCAGGGATCCTCACTTATT 2234
Query 2181 CTCATTTTCTTTCAACAGAG 2200
||||||| ||||||||||||
Sbjct 2235 CTCATTTGCTTTCAACAGAG 2254
Score = 2109 bits (1142), Expect = 0.0
Identities = 1234/1279 (96%), Gaps = 4/1279 (0%)
Strand=Plus/Plus
Query 2323 GTTGAGGAGATTTACAACTTCGCTCAAGATGACCTCTTGACTGAGGATATATATTTACTA 2382
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 2266 GTTGAGGAGATTTACAACTTTGCTCAAGATGACCTCTTGACTGAGGATATATATTTCCTA 2325
Query 2383 GACACCCATGCTGAAGTTTTTGTCTGGGTTGGTCAATGTGTGGAGCCCAAGGAAAAGCAA 2442
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2326 GACACCCATGCTGAAGTTTTTGTCTGGGTTGGTCAATGTGTGGAGCCTAAGGAAAAGCAA 2385
Query 2443 ACTGTATTTGAGATTGGCCAAAAATACATAGATCTTGCTGGATCCTTGGAAGGCTTGCAT 2502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2386 ACTGTATTTGAGATTGGCCAAAAATACATAGATCTTGCTGGATCCTTGGAAGGCTTGCAT 2445
Query 2503 CCTAAAGTCCCACTCTACAAAATCAATGAAGGGAACGAACCATGCTTCTTCACCACGTAC 2562
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2446 CCTAAAGTCCCAATCTACAAAATCAATGAAGGGAACGAACCATGCTTCTTCACCACTTAC 2505
Query 2563 TTTTCTTGGGATGCCACTAAAGCTATCGTACAAGGAAACTCATTCCAGAAAAAGGCAGCG 2622
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 2506 TTTTCTTGGGATGCCACTAAAGCTATCGTACAAGGAAATTCATTCCAGAAAAAGGCATCG 2565
Query 2623 TTGTTACTTGGCACTCACCACGTTGTGGAGGATAAGTCTAACGGTGGTAACCAAGGACTA 2682
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2566 TTGTTATTTGGCACTCACCACGTTGTGGAGGATAAGTCTAACGGTGGGAACCAAGGACTA 2625
Query 2683 AGGCAAAGGGCTGAAGCACTAGCTGCCTTAAATTCTGCATTTAATTCTTCTAGTAACCGG 2742
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||
Sbjct 2626 AGGCAAAGGGCTGAAGCACTAGCTGCCTTAAATTCGGCATTTAACTCTTCTAGTAACAGG 2685
Query 2743 CCTGCCTACTCGAGCCAGGACAGATCAAACGAAAGTCACGACGGCCCAAGACAGAGAGCT 2802
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2686 CCTGCCTATTCGAGCCAGGACAGATTAAACGAAAGTCACGACGGCCCAAGACAGAGAGCT 2745
Query 2803 GAAGCTTTAGCAGCATTGTCATCCGCATTCAATTCTTCTTCGTCATCAACTAAATCGCCT 2862
||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2746 GAAGCTTTAGCCGCCTTGTCATCCGCATTCAACTCTTCTTCGTCATCAACTAAATCGCCT 2805
Query 2863 CCACCACCAAGGCCAGTGGGGACGAGTCAGGCTTCACAGAGAGCAGCAGCAGTGGCTGCT 2922
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2806 CCACCACCAAGGCCAGTGGGGACGAGTCAGGCTTCACAGAGAGCAGCAGCAGTGGCTGCT 2865
Query 2923 CTCTCTCAAGTTCTTGTTGCGGAGAATAAGAAATCACCTGATACCTCTCCTACAAGAAGA 2982
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2866 CTTTCTCAAGTTCTTGTTGCGGAAAATAAGAAATCACCTGATACCTCTCCTACAAGAAGA 2925
Query 2983 TCCACTAGCTCCAACCCAGCAGATGACACCCCTCTAACGGAAGCAAAAGATGAAGAAGAG 3042
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 2926 TCCACTAGCTCCAACCCAGCAGATGACATCCCTCTGACGGAAGCAAAAGATGAAGAAGAG 2985
Query 3043 GCTTCAGAAGTAGCTGGTCATGAAGCCAAGGAAGAAGAGGAAGTCTCACCTGCAACAGAT 3102
|||||||| |||||||||| |||||||||||||||||||||||| ||||||||| |||||
Sbjct 2986 GCTTCAGAGGTAGCTGGTCTTGAAGCCAAGGAAGAAGAGGAAGTTTCACCTGCAGCAGAT 3045
Query 3103 GAAACAGAAGCAAAGGAGGAAACAGAAGAGCAAGGTGATTCTGAAATAGAACCAAGTGGA 3162
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 3046 GAAACAGAAGCAAAGCAGGAAACAGAAGAGCAAGGTGATTCTGAAATACAACCAAGTGGA 3105
Query 3163 GCAACTTTCACCTATGAACAGCTGAGAGCTAAATCTGAGAACCCAGTGACTGGAATCGAT 3222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3106 GCAACTTTCACCTATGAACAGCTGAGAGCTAAATCTGAGAACCCAGTGACTGGAATCGAT 3165
Query 3223 TTCAAACGCAGAGAGGCTTATCTATCGGAGGAAGAGTTCCAAAGTGTGTTTGGGATGGAG 3282
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 3166 TTCAAACGCAGAGAGGCTTATCTATCTGAGGAAGAGTTCCAAAGTGTGTTTGGGATCGAG 3225
Query 3283 AAAGAAGCATTCAACAACTTACCACGTTGGAAACAAGATCTGCTTAAGAAGAAATTGGAC 3342
|||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||
Sbjct 3226 AAAGAAGCATTCAACAACTTACCACGTTGGAAGCAAGATCTGCTTAAGAAGAAGTTCGAC 3285
Query 3343 TTGTTCTAGCTTTGGTTTTATGTGGGTCAGTCAATTTGTTGTTGGTTTGAAGAATGTATT 3402
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 3286 TTGTTCTAG-TTTGGTTTTATGTGGGTCAGTCAATTTGTTGTTGGTTTGAAGAGTGTGTT 3344
Query 3403 TTTT-GTTTCTTTTCTTCAGTTTTATTTACTTGGCTCATTTATATTTCTCTCATGGGTTG 3461
|||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 3345 TTTTTGTTTCTCTTCTTCAATTTTATTTACTTGGCTCATTTATATTTCTCTCATGGGTTG 3404
Query 3462 GTTTGGGTTTGATTCTTTATATTTTCTGACAGCACAATGAGGTTTCTGGTAATGATGATG 3521
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 3405 GTTTGGGTTTGATTCTTTATATTTTCTGACAGCACAATGAGGTTTCTTGTAATGATGATG 3464
Query 3522 ATCATAGATTGTAATGATTGTTTTACCCGAGACAGATTTGTGATTGTGGGCAGCAAAATT 3581
||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||
Sbjct 3465 ATCATAGATTGTAATGAATGTTTTACCCGAGACAGATTTGTGA--GTGGGTAGCAAAATT 3522
Query 3582 CTCTGATTAGTGATCTTCC 3600
|| ||||| ||||||||||
Sbjct 3523 CTTTGATTTGTGATCTTCC 3541
> AT3G57410.1 | Symbols: VLN3, ATVLN3 | villin 3 | chr3:21243136-21251100
REVERSE LENGTH=3479
Length=3479
Score = 2095 bits (1134), Expect = 0.0
Identities = 1648/1899 (87%), Gaps = 23/1899 (1%)
Strand=Plus/Plus
Query 315 GTCTACCAAAGTGCTGGATCCTGCATTTCAAGGAGCT-GGTCAGAAACCAGGGACTGAAA 373
||| || ||||| |||||||||| |||||||||| | || ||||||||||| |||||||
Sbjct 203 GTCAACAAAAGTATTGGATCCTGCGTTTCAAGGAG-TGGGGCAGAAACCAGGTACTGAAA 261
Query 374 TCTGGAGAATCGAGAATTTCGAGGTAGTTCCAGTACCAAAGTCTGAGCATGGAAAGTTCT 433
||||||||||||| ||||| ||| ||| ||||||||||||||||| |||||||||||||
Sbjct 262 TCTGGAGAATCGAAAATTTTGAGCCAGTCCCAGTACCAAAGTCTGAACATGGAAAGTTCT 321
Query 434 ATATGGGAGATACTTACATTGTCTTGCAGACAACACAGAATAAGGGGGGTGCTTATTTGT 493
||||||||||||| ||||||||||||||||| |||||||||||||| || |||||| | |
Sbjct 322 ATATGGGAGATACCTACATTGTCTTGCAGACCACACAGAATAAGGGTGGCGCTTATCTAT 381
Query 494 TTGATATACATTTCTGGATTGGTAAAGATACAAGCCAGGATGAAGCTGGAACAGCAGCTG 553
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 382 TTGATATACATTTTTGGATTGGTAAAGATACAAGCCAGGATGAAGCTGGAACAGCAGCTG 441
Query 554 TTAAAACAGTGGAACTCGATGCAGTTCTTGGAGGCCGTGCTATCCAACACCGGGAACTTC 613
| || ||||| ||||| ||||||| |||||||||||| ||| ||||| | || ||| |||
Sbjct 442 TCAAGACAGTTGAACTTGATGCAGCTCTTGGAGGCCGAGCTGTCCAATATCGTGAAATTC 501
Query 614 AGGGTCATGAATCTGACAAGTTCTTGTCTTACTTCAAGCCATGTATAATTCCGCTAGAGG 673
| ||||||||||||||||| |||||||||||||||||||| || || || || |||||||
Sbjct 502 AAGGTCATGAATCTGACAAATTCTTGTCTTACTTCAAGCCTTGCATTATACCACTAGAGG 561
Query 674 GTGGTGTTGCGTCTGG-TTTCAAAACACCTGAAGAACAAGTGTTTGAGACCCGGTTATAT 732
|||||||||||||||| ||| |||| ||| || || | | |||||| |||||| | |||
Sbjct 562 GTGGTGTTGCGTCTGGATTTAAAAA-ACCGGAGGAGGAGGAGTTTGAAACCCGGCTGTAT 620
Query 733 ACTTGCAAAGGAAAACGTGCTATTCGTTTGAAGCAGGTTCCTTTTGCCCGCTCATCACTG 792
|| |||||||||||||||||| | | |||||||||||||||||||| |||||||| |||
Sbjct 621 ACCTGCAAAGGAAAACGTGCTGTCCACTTGAAGCAGGTTCCTTTTGCACGCTCATCTCTG 680
Query 793 AATCATGATGATGTATTTATCTTGGACACCGAGGAAAAGATCTATCAGTTCAATGGTGCA 852
|||||||||||||| ||||||||||||||| |||||||||| |||||||| |||||||||
Sbjct 681 AATCATGATGATGTGTTTATCTTGGACACCAAGGAAAAGATTTATCAGTTTAATGGTGCA 740
Query 853 AATTCAAACATTCAGGAGAGAGCCAAAGCTTTGGAAGTCGTTCAGTATTTAAAAGACAAG 912
|||||||| || || |||||||| ||||| |||| |||| |||| ||||| |||||||||
Sbjct 741 AATTCAAATATCCAAGAGAGAGCTAAAGCGTTGGTAGTCATTCAATATTTGAAAGACAAG 800
Query 913 TATCATGAAGGAACTTGTGATGTTGCGATTGTTGATGATGGGAAATTAGATACAGAATCA 972
| |||||||||||||| ||| ||||| |||||||||||||| ||||||||||||||||||
Sbjct 801 TTTCATGAAGGAACTTCTGACGTTGCTATTGTTGATGATGGAAAATTAGATACAGAATCA 860
Query 973 GATTCTGGTGCATTT-TGGGTCCTCTTTGGTGGTTTTGCTCCTATCGGAAGGAAAGTTGC 1031
|||||||| | | || |||||||||||||| || |||||||| || | ||||||||||||
Sbjct 861 GATTCTGGCG-AGTTCTGGGTCCTCTTTGGGGGGTTTGCTCCAATAGCAAGGAAAGTTGC 919
Query 1032 CAATGATGATGACATTATCCCGGAGTCAACTCCACCTAAGCTTTATTGCACCACTGATGG 1091
| ||| ||||| ||||| |||||| ||||||| |||||||||||| | | | |||||||
Sbjct 920 GAGTGAGGATGAAATTATTCCGGAGACAACTCCGCCTAAGCTTTATAGTATCGCTGATGG 979
Query 1092 TAAGATAGAACCTATTGACGGTGATTTATCCAAATCTATGCTGGAAAACACCAAATGTTA 1151
| || | ||| |||| ||||| ||||| |||||||||||||| ||||||| ||||| ||
Sbjct 980 TCAGGTGGAATCTATAGACGGCGATTTGTCCAAATCTATGCTAGAAAACAATAAATGCTA 1039
Query 1152 CCTCTTGGACTGTGGTGCTGAGGTATTTATCTGGGTTGGCCGTGTCACTCAAGTGGATGA 1211
||| |||||||| ||| ||||| | ||||||||||||||||| || ||||||||||| ||
Sbjct 1040 CCTTTTGGACTGCGGTTCTGAGATCTTTATCTGGGTTGGCCGAGTAACTCAAGTGGAAGA 1099
Query 1212 GAGGAAAGCTGCTAGT--AATTCTGCTGAGGAATTCCTTGCTAGTGAAAATAGGCCAATT 1269
||| ||| |||||| | || |||||||||| || |||||||||||||||||||||
Sbjct 1100 GAGAAAAACTGCTA-TCCAAG-CTGCTGAGGATTTTGTTGCTAGTGAAAATAGGCCAAAG 1157
Query 1270 GCAACACGCGTTACTCGTGTTATCCAAGGTTATGAGTCCCATTCTTTCAAGTCTAACTTT 1329
||||||||| | || |||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 1158 GCAACACGCATAACCCGTGTTATTCAAGGTTATGAGCCCCATTCTTTCAAGTCTAACTTT 1217
Query 1330 GACTCTTGGCCATCAGGCTCGGCCACTCCTGGTAACGAAGAAGGACGAGGAAAAGTCGCT 1389
||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||
Sbjct 1218 GACTCTTGGCCATCAGGCTCGGCAACTCCTGCTAATGAAGAAGGACGAGGAAAAGTCGCT 1277
Query 1390 GCTTTACTGAAGCAACAAGGTGTTGGGCTCAAGGGTAT-TGCGAAAAGTGCACCAGTGAA 1448
|| ||||| |||||||||||||||||| | ||||| | | | ||||| ||||||||||
Sbjct 1278 GCATTACTTAAGCAACAAGGTGTTGGGTTAAAGGGCCTGT-CAAAAAGCACACCAGTGAA 1336
Query 1449 TGAGGATATTCCACC-TCTGCTTGAAGGTGGTGGAAAGTTGGAGGTTTGGTACGTTAATG 1507
||||||||||||||| | |||||||||| |||||||||||||||||||||||| || |||
Sbjct 1337 TGAGGATATTCCACCAT-TGCTTGAAGGAGGTGGAAAGTTGGAGGTTTGGTACATTGATG 1395
Query 1508 GTAAAGCCAAGACTCTGT-TA-CCTAAAGAAGATATTGGCAAGCTCTATTCTGGGGACTG 1565
|| |||||||| | | || || ||||| || | || || || ||||||||||||||
Sbjct 1396 CCAACTCCAAGACTGT-TCTATCC-AAAGATCATGTCGGAAAACTTTATTCTGGGGACTG 1453
Query 1566 CTATTTGGTCCTTTATACCTATCATTCTGGGGAGAGGAAAGACGAATATTTCTTGTGTTG 1625
|||| |||||||||||||||| |||||||| || |||||||| || || |||||||| ||
Sbjct 1454 CTATCTGGTCCTTTATACCTACCATTCTGGTGAAAGGAAAGAAGACTACTTCTTGTGCTG 1513
Query 1626 TTGGTTTGGAAAGAAAAGCATTCAGGAGGACCAAGATACAGCAATTCGACTGGCGAATAC 1685
||||||||||||||| || | ||||||||| ||||| |||||| |||| || |||| ||
Sbjct 1514 TTGGTTTGGAAAGAATAGTAATCAGGAGGATCAAGAAACAGCAGTTCGTCTAGCGAGCAC 1573
Query 1686 AATGTCAAACTCTTTAAAAGGAAGACCTGTGCAGGGGCGTATATACGAGGGTAAAGAGCC 1745
|||| |||| || || || |||||||| ||||||| ||||||| ||||||||||||||
Sbjct 1574 AATGACAAATTCGTTGAAGGGAAGACCAGTGCAGGCCCGTATATTTGAGGGTAAAGAGCC 1633
Query 1746 TCCACAATTTGTTGCCCTTTTTCAACCTATGGTGGTCCTAAAGGGTGGTTTGAGCTCTGG 1805
||||||||||||||| |||||||||| |||||| ||||| ||||| ||||||||||||||
Sbjct 1634 TCCACAATTTGTTGCACTTTTTCAACATATGGTTGTCCTTAAGGGCGGTTTGAGCTCTGG 1693
Query 1806 GTACAAAAACAGTGTGGGAGAGG--GGT-CAACAGATGAAACCTACACGCCAGAATCAAT 1862
|||||||| ||| || |||| ||| | ||| |||||||||||||| ||||||||
Sbjct 1694 TTACAAAAATAGTATGACAGAGAAAGGTTCGTCAGGCGAAACCTACACGCCGGAATCAAT 1753
Query 1863 TGCACTAATTCAAGTATCTGGAACCGGAGTTCACAATTATAAAGCTGTGCAAGTTGAATT 1922
|||||| ||||||||||||||||| |||||||||||| |||| ||| | |||||||||
Sbjct 1754 TGCACTTATTCAAGTATCTGGAACTGGAGTTCACAATAATAAGGCTCTACAAGTTGAAGC 1813
Query 1923 GGTGGCAACATCTTTGAACTCTTATGAGTGCTTCCTTCTGCAATCTGGTACTTCCATGTT 1982
||||||||| ||||||||||| ||||| ||||||||||||||||| ||||||||||||||
Sbjct 1814 GGTGGCAACTTCTTTGAACTCCTATGACTGCTTCCTTCTGCAATCGGGTACTTCCATGTT 1873
Query 1983 CCTTTGGCATGGAAATCAAAGTACGCATGAACAGCTAG-AACTGGCCACTAAAGTTGCTG 2041
||||||| |||||| || ||||||||||| |||| || ||||||| ||||||||||||
Sbjct 1874 CCTTTGGGTTGGAAACCATAGTACGCATGAGCAGC-AGGAACTGGCTGCTAAAGTTGCTG 1932
Query 2042 AATTCTTGAAGCCTGGGAGTACTCTCAAGCATGCCAAAGAAGGAACGGAGAGCTCAACCT 2101
||||||| |||||||||| |||| ||||||| || ||||| ||||| ||||||||| |||
Sbjct 1933 AATTCTTAAAGCCTGGGACTACTATCAAGCACGCAAAAGAGGGAACAGAGAGCTCATCCT 1992
Query 2102 TTTGGTTTGCACTTGGGGGAAAACAGAATTTCACCAGCAAGAAGGCTTCCTCTGAGACTA 2161
|||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||
Sbjct 1993 TTTGGTTTGCACTTGGGGGAAAACAGAACTTCACCAGCAAGAAAGTTTCCTCTGAGACTG 2052
Query 2162 TCAGGGATCCTCACTTATTCTCATTTTCTTTCAACAGAG 2200
|||||||||||||||| ||||| ||||| ||||||||||
Sbjct 2053 TCAGGGATCCTCACTTGTTCTCCTTTTCCTTCAACAGAG 2091
Score = 538 bits (291), Expect = 1e-151
Identities = 537/654 (82%), Gaps = 24/654 (4%)
Strand=Plus/Plus
Query 2323 GTTGAGGAGATTTACAACTTCGCTCAAGATGACCTCTTGACTGAGGATATATATTTACTA 2382
||||| |||||| ||||||| | |||||||||||||||||| ||||| || ||||||||
Sbjct 2103 GTTGAAGAGATTCACAACTTTGATCAAGATGACCTCTTGACGGAGGAAATGCATTTACTA 2162
Query 2383 GACACCCATGCTGAAGTTTTTGTCTGGGTTGGTCAATGTGTGGAGCCC-AAGGAAAAGCA 2441
|| || |||||||||||||||||||||||||||||||||||||| ||| |||||||| ||
Sbjct 2163 GATACTCATGCTGAAGTTTTTGTCTGGGTTGGTCAATGTGTGGA-CCCTAAGGAAAAACA 2221
Query 2442 AACTGTATTTGAGATTGGCCAAAAATACATAGATCTTGCTGGATC-CTTGGAAGGCTTG- 2499
||||| |||||||||||||||| ||||||| |||| ||||| || || ||||||||||
Sbjct 2222 AACTGCCTTTGAGATTGGCCAAAGATACATAAATCTGGCTGGTTCGCT-GGAAGGCTTGT 2280
Query 2500 CATCCTAAAGTCCCACTCTACAAAATCAATGAAGGGAAC-GAACCATGCTTCTTCACCAC 2558
| ||| ||||| ||| | |||||||||| ||| ||||| ||||| ||||||||||||||
Sbjct 2281 C-TCCAAAAGTTCCATTATACAAAATCACTGA-GGGAAATGAACCGTGCTTCTTCACCAC 2338
Query 2559 GTACTTTTCTTGGGATGCCACTAAAGCTA-TCGTACAAGGAAACTCATTCCAGAAAAAGG 2617
|| ||||| |||||| | |||||||||| | || ||||| || || | |||||| ||||
Sbjct 2339 TTATTTTTCATGGGATTCTACTAAAGCTACT-GTGCAAGGGAATTCCTACCAGAAGAAGG 2397
Query 2618 CAGCGTTGTTACTTGGCACTCACCACGTTGTGGAGGATAAGTCTAACGGTGGTAACCAAG 2677
|||| || |||||||| || |||||||||||||||||| |||||| | |||| |||||||
Sbjct 2398 CAGCATTATTACTTGGTACACACCACGTTGTGGAGGATCAGTCTAGCAGTGGGAACCAAG 2457
Query 2678 GACTAAGGCAAAGGGCTGAAGCACTAGCTGCCTTAAATTCTGCATTTAATTCTTCTAGTA 2737
||| |||||||||||||| || |||||||||| | |||||| |||||||||||| |
Sbjct 2458 GACCAAGGCAAAGGGCTGCTGCTTTAGCTGCCTTGACTTCTGCCTTTAATTCTTCTTCTG 2517
Query 2738 ACCGGCCT-GCCTACTC-GAGCC-AGGACAGATCAAACGAAAGTCACGACGGCCCAAGAC 2794
| | || | ||| ||||| || |||||||||| | |||||| | || |||||||
Sbjct 2518 GGAGAACAAGC-T-CTCCGAGCCGAG-ACAGATCAAATGGAAGTCAAGGGGGTCCAAGAC 2574
Query 2795 AGAGAGCTGAAGCTTTAGCAGCATTGTCATCCGCATTCAATTCTTCTTCGTCATCAACTA 2854
| || |||||||||||||| || || ||||||||||||||||||| | ||||||| |
Sbjct 2575 AAAGGGCTGAAGCTTTAGCCGCCTTAACATCCGCATTCAATTCTTCACCATCATCAA--A 2632
Query 2855 AATCGCCTCCACCACCAAGGCCAGTGGG-GACGAGTCAGGCTTCACAGAGAGCAGCAGCA 2913
|| ||||| || ||| ||| | ||| || ||||| ||||| ||||||||||||
Sbjct 2633 G-TCACCTCC-CCG--AAGATCAG-GATTGACAAGCCAGGCGTCACAAAGAGCAGCAGCA 2687
Query 2914 GTGGCTGCTCTCTCTCAAGTTCTTGTTGCGGAGAATAAGAAATCACCTGATACC 2967
||||||||||| || |||||||| ||| ||||| ||||||||||||||||||
Sbjct 2688 GTGGCTGCTCTTTCCCAAGTTCTCACTGCTGAGAAGAAGAAATCACCTGATACC 2741
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 179246487339
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5