BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483261
Length=1187
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41800.1 | Symbols: | Protein of unknown function, DUF642 |... 1746 0.0
AT2G41810.1 | Symbols: | Protein of unknown function, DUF642 |... 680 0.0
> AT2G41800.1 | Symbols: | Protein of unknown function, DUF642
| chr2:17436529-17438040 REVERSE LENGTH=1290
Length=1290
Score = 1746 bits (945), Expect = 0.0
Identities = 1105/1184 (93%), Gaps = 4/1184 (0%)
Strand=Plus/Plus
Query 1 ATTGATATAGGCGAACTAATTGATAAGACTTTAAAATGTCTCTCTATCACTCTCTTAGCC 60
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1 ATTGATATAGGCGAACTAATTAATAAGACTTTAAAATGTCTCTCTATCACTCTCTTAGCA 60
Query 61 TTTTCCTCCTTTTCTCTCTCTGCCATGGCTCTTACAGTCTCCAACCACGTCGAGTTCCTC 120
|||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 61 TTTTCCTCCTCCTATCTCTCTGCCATGGCTCTTACAGTCTTCAACCACGTCGAGTTCCTC 120
Query 121 ATCTAGACGGGCTTCTCCCAAATGGAAACTTCGAGCA-AACCCCTCTCAAATCAAACATG 179
||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 121 ATCTAGACGGGATTCTCCCAAATGGAAACTTCGAG-ATAACCCCTCTCAAATCAAACATG 179
Query 180 AAGGGTCGACAAATAATCGGCGCTAACTCTCTTCCTCACTGGCAAATCGGCGGCCACATG 239
|||||||||||||||||||| ||||||||||||||||| ||| |||||| ||| ||| ||
Sbjct 180 AAGGGTCGACAAATAATCGGGGCTAACTCTCTTCCTCATTGGGAAATCGCCGGGCACGTG 239
Query 240 GAGTTAGTCTCCGGTGGGCCTCAGCCCGGAGGATTCTATTTTCCGGTCCCACGTGGAGTC 299
||| ||||||||||||| |||||||| |||||||||||||| || || ||||||||||||
Sbjct 240 GAGCTAGTCTCCGGTGGACCTCAGCCTGGAGGATTCTATTTCCCCGTTCCACGTGGAGTC 299
Query 300 CACGCGATTAGAATAGGAAGCTTGGGGACCATCTCTCAGGACGTGAGAGTGAAGAGTGGT 359
|||||| ||||| | |||| |||||| |||||||||||| ||||||| ||||||||||||
Sbjct 300 CACGCGGTTAGACTCGGAAACTTGGGCACCATCTCTCAGAACGTGAGGGTGAAGAGTGGT 359
Query 360 TTGGTCTACTCTCTCACGTTCGGAGCCACGAGGACTTGCCCTCAGGATGAGAACATCAAA 419
|||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 360 TTGGTCTACTCTCTAACGTTCGGAGCTACGAGGACTTGTGCTCAGGATGAGAACATCAAA 419
Query 420 GTCTCAGTGCCTGGTCAGGCCAATGAGCTTCCGATCCAGACCGTCTTTAGCTCCGACGGT 479
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 420 GTCTCTGTGCCTGGTCAGGCCAATGAGCTTCCGCTCCAGACCGTCTTTAGCTCCGACGGT 479
Query 480 GGAGACACTTACGCTTGGGCTTTCAAGGCAA-TGTCCGATGTGGTTAAGGTCACTTTCCA 538
||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||
Sbjct 480 GGAGACACTTACGCTTGGGCTTTCAAGGCAACT-TCTGATGTGGTTAAGGTCACTTTCCA 538
Query 539 TAACCCTGGTGTTCAAGAGGACCGCACGTGTGGACCTCTCTTAGATGTTGTCGCTATCAA 598
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 539 TAACCCTGGTGTTCAAGAAGACCGCACGTGTGGACCTCTCTTAGATGTTGTCGCAATCAA 598
Query 599 GGAGATTCTTCCTCTCCGGTATACCAGAGGAAACTTGGTGAAAAACGGAGGATTCGAGAT 658
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 599 GGAGATTCTTCCTCTCCGGTATACCAGAGGAAACTTGGTGAAAAATGGAGGATTCGAGAT 658
Query 659 TGGTCCACACGTTTTCGCTAATTTCTCAACCGGAATCTTGATTCCGGCAAGAATCCAAGA 718
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 659 CGGTCCACATGTTTTCGCTAATTTCTCAACCGGAATCTTGATTCCAGCAAGAATCCAAGA 718
Query 719 CTTTATCTCTCCTCTTCCGGGATGGATCGTCGAATCCCTTAAGCCAGTGAAGTACATCGA 778
||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 719 CTTCATCTCTCCTCTTCCGGGATGGATCGTCGAATCCCTTAAACCAGTGAAGTATATCGA 778
Query 779 TAGACGTCATTTCAAGGTTCCTTATGGACAAGGCGCCGTAGAACTAGTCGCCGGAAGAGA 838
||||||||||||||| ||||||||||||||||| ||||| || ||||| |||||||||||
Sbjct 779 TAGACGTCATTTCAAAGTTCCTTATGGACAAGGGGCCGTCGAGCTAGTTGCCGGAAGAGA 838
Query 839 AAGTGCAATCGCTCAGATCATCCGAACCATCGCTGGTAACGCCTACATTCTCTCGTTCGC 898
||| ||||| ||||||||||||||||||||||||||||| ||||| || ||||| |||||
Sbjct 839 AAGCGCAATAGCTCAGATCATCCGAACCATCGCTGGTAAAGCCTATATGCTCTCATTCGC 898
Query 899 GGTCGGCGATGCGCAAAACGGTTGCCACGGGTCTATGATGGTGGAAGCGTTCGCAGGAAG 958
||| || ||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 899 GGTTGGTGATGCACAAAACGGTTGCCACGGGTCGATGATGGTGGAAGCGTTCGCAGGAAG 958
Query 959 AGAGCCATTTAAACTTCCTTTTATGTCAGAAGGTAAAGGAGCGTTCAAAACAGGGCATTT 1018
||| || ||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 AGAACCGTTTAAGCTTTCTTTTATGTCAGAAGGTAAAGGAGCGTTCAAAACAGGGCATTT 1018
Query 1019 TAGGTTTGTTGCTGATTCAAATCGAACGAGGCTAACATTTTATAGTGCATTTTATCATAC 1078
|||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||
Sbjct 1019 TAGGTTTGTTGCTGATTCGGATCGAACGAGGCTAACGTTTTATAGTGCGTTTTATCATAC 1078
Query 1079 TAAGCTTCATGATTTCGGCCATCTTTGTGGGCCTGTTCTTGATAGCGTCGTTGTTACCCC 1138
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1079 AAAGCTTCATGACTTCGGCCATCTTTGTGGGCCTGTTCTTGATAGCGTTGTTGTTACCCT 1138
Query 1139 AGCCCGTTAATAAATTGTGGCTCTTAATTTTTATCAGACTGAAT 1182
||||||||| || |||||||| |||||| |||| |||||||||
Sbjct 1139 GGCCCGTTAACAATTTGTGGCTTTTAATTCTTATTAGACTGAAT 1182
> AT2G41810.1 | Symbols: | Protein of unknown function, DUF642
| chr2:17439374-17441350 REVERSE LENGTH=1207
Length=1207
Score = 680 bits (368), Expect = 0.0
Identities = 877/1117 (79%), Gaps = 58/1117 (5%)
Strand=Plus/Plus
Query 35 AATGTCTCTC-TATCACTCTCTTAGCCTT-TTCCTCCTTT-TCTCTCTCTG-CCATGGCT 90
|||||||||| | || ||||||| | ||| || |||||| | ||||| || ||||| |
Sbjct 54 AATGTCTCTCGT-TCTCTCTCTTTG-CTTGGTCTTCCTTTGT-TCTCT-TGTTCATGGTT 109
Query 91 CTTACAGTC-T-CCAACCACGTC-GAGTTCCTCATCTAGACGGGCTTCTCCCAAATGGAA 147
|| | || | | || | ||| | || ||||||||| || ||||||||||||||||| |
Sbjct 110 CTCATAG-CTTACC-AGCACAACGGA-CTCCTCATCTTGATGGGCTTCTCCCAAATGGGA 166
Query 148 ACTTCGAGCAAACCCCTCTCAAATCAAACATGA-AGGGTCGACAAATAATCGGCGCTA-A 205
|||| ||||||| ||| |||||||||||||| | | | |||||||| ||| | |
Sbjct 167 ACTTTGAGCAAATTCCTAACAAATCAAACATGAGAAAG-AGGCAAATAATTGGC-AAATA 224
Query 206 CTCTCTTCCTCACTGGCAAATCGGCGGCCACATGGAGTTAGTCTCCGGTGGGCCTCAGCC 265
||||||||| || ||| ||||| ||||||| | ||| ||||||| || || || |||||
Sbjct 225 CTCTCTTCCACATTGGGAAATCTCCGGCCACGTAGAGCTAGTCTCTGGCGGTCCACAGCC 284
Query 266 CGGAGGATTCTATTTTC-CGGTCCCACGTGGAGTCCACGCGA-TTAGAATA-GGAAGCTT 322
||| || || || ||| | || ||||||||||||||||| | ||| || |||| |||
Sbjct 285 CGGTGGTTTTTA-CTTCGCAGTGCCACGTGGAGTCCACGC-AGCTAGGCTAGGGAA-CTT 341
Query 323 GGGGA-CCATCTCTCAGGACGTGAGAGTGAAGAGTGGTTTGGTCTACTCTCTCACGTTCG 381
| | | || |||||| | |||| |||||| || || |||||||| ||||| ||||| |
Sbjct 342 -AGCATCAATATCTCAGTATGTGAAAGTGAAAAGCGGCTTGGTCTATTCTCTAACGTTTG 400
Query 382 GAGCCACGAGGACTTGCCCTCAGGATGAGAACATCA-AAGTCTCAGTGCCTGGTCAGGCC 440
| | |||||||||||| |||| || |||||||||| || |||| |||||||||||| ||
Sbjct 401 GTGTCACGAGGACTTGTGCTCAAGACGAGAACATCAGAA-TCTCTGTGCCTGGTCAGACC 459
Query 441 AATGAGCTTCCGATCCAGACCGTCTTTAGCT-CCGACGGTGGAGACACTTACGCTTGGGC 499
|||||||| || ||||| || | || || | || ||||||| || || ||||| |||||
Sbjct 460 AATGAGCTACCAATCCAAACATTGTTCAG-TACCAACGGTGGTGATACGTACGCATGGGC 518
Query 500 TTTCAAGGCAATGTCCGA-TGTGGTTAAGGTCACTTTCCATAACCCTGGTGTTCAAGAGG 558
||| ||||||| ||| || | |||||||||||||||| |||| |||||||||||||| |
Sbjct 519 TTTTAAGGCAACGTCTGACT-TGGTTAAGGTCACTTTTTATAATCCTGGTGTTCAAGAAG 577
Query 559 ACCGC-ACGTGTGGACCTCTC-TTAGATGTTGTCGCTATCAAGGAGATTCTTCCTCTCCG 616
||| | || ||||| || || || || | ||| || || ||||||||||||||||||||
Sbjct 578 ACC-CTACTTGTGGCCCAATCGTT-GACGCTGTTGCCATTAAGGAGATTCTTCCTCTCCG 635
Query 617 GTATACCAGAGGAAAC-TTGGTGAAAAACGGAGGATTCGAGATTGGTCCACACGTTTTC- 674
|||||||| ||| ||| ||| |||||||||| ||||| |||| ||||||||||| |||
Sbjct 636 GTATACCAAAGGGAACCTTG-TGAAAAACGGCGGATTTGAGACCGGTCCACACGTATTCA 694
Query 675 GCTAATTTCTCAACCGGAATCTTGATTCCGGC-AAGAATCCAAGACTTTATCTCTCCTCT 733
|| || ||||| |||||||| || |||||||| |||| | |||||| | ||||| || ||
Sbjct 695 GC-AACTTCTCTACCGGAATTTTAATTCCGGCGAAGA-TACAAGACCTAATCTCACCGCT 752
Query 734 TCCGGGATGGATCGTCGAATCCCTTAAGCCAGTGAAGTACATCGATAGAC-GTCATTTCA 792
||||||||||||||||||||| || || || || ||||||||||||| || | || ||||
Sbjct 753 TCCGGGATGGATCGTCGAATCTCTAAAACCGGTTAAGTACATCGATA-ACCGCCACTTCA 811
Query 793 AGGTTCCTT-ATGGACAAGGC-GCCGTAGAACTAGTCGCCGGAAGAGAAAGTGCAATCGC 850
||||||| | | || | | | || | || || || |||||||||||||| ||||||||
Sbjct 812 AGGTTCCCTCA-GGTCTCG-CAGCAATCGAGCTTGTTGCCGGAAGAGAAAGCGCAATCGC 869
Query 851 TCAGATCATCCGAACCATCGCTGGTAACGCCTACATTCTCTCGTTCGCGGTCGGCGATGC 910
|||||||||||| ||| || | ||||| ||||||||||||||| | || || || ||
Sbjct 870 TCAGATCATCCGTACCGTCTCCGGTAAAAACTACATTCTCTCGTTTGTTGTGGGAGACGC 929
Query 911 GCAAAACGGTTGCCACGGGTCTATGATGGTGGAAGCGTTCGCAGGAAGAGAGCCATTTAA 970
|| || ||||| ||||| || ||||||||||| ||||| || |||| | | | |||||
Sbjct 930 ACACAATGGTTGTCACGGATCGATGATGGTGGAGGCGTTTGCGGGAATATCGGCGTTTAA 989
Query 971 ACTTCCTTTT-ATGTCAGAAGG-TAAAGGAGCGTTCAAAACAGGGCATTTTAG-GTTT-G 1026
|| | || | || || | |||||||||||||||| |||| ||| | |||| |
Sbjct 990 GGTTACATTCGAA-TCT-AATGATAAAGGAGCGTTCAAAGTGGGGCGTTTC-GCGTTTCG 1046
Query 1027 TTGCTGATTCAAATCGAACGAGGCTAACATTT-TATAGTGCATTTTATCATACTAAGCTT 1085
| || ||||| ||||| || ||| |||| ||| ||||||| ||||||||||| ||||||
Sbjct 1047 T-GCCGATTCGAATCGCACAAGGATAAC-TTTCTATAGTGGGTTTTATCATACCAAGCTT 1104
Query 1086 CATGATTTCGGCCATCTTTGTGGGCCTGTTCTTGATA 1122
|||||||| || ||||||||||||||||| |||||||
Sbjct 1105 CATGATTTTGGACATCTTTGTGGGCCTGTGCTTGATA 1141
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58282832745
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5