BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483262
Length=1144
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41810.1 | Symbols: | Protein of unknown function, DUF642 |... 1700 0.0
AT2G41800.1 | Symbols: | Protein of unknown function, DUF642 |... 688 0.0
> AT2G41810.1 | Symbols: | Protein of unknown function, DUF642
| chr2:17439374-17441350 REVERSE LENGTH=1207
Length=1207
Score = 1700 bits (920), Expect = 0.0
Identities = 1059/1127 (94%), Gaps = 6/1127 (1%)
Strand=Plus/Plus
Query 19 TAAATGCTCACAATGTCTCTCGTTCTCTCTCTTTGCTTGGCCTTCCTTTGTTCTTTTGTT 78
|||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 43 TAAAAGCTCACAATGTCTCTCGTTCTCTCTCTTTGCTTGGTCTTCCTTTGTTCTCTTGTT 102
Query 79 CATGGTTCTCATAGCTTACCAGCACAACGGACTCTTCATCTTGATGGGCTTCTTCCAAAT 138
|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 103 CATGGTTCTCATAGCTTACCAGCACAACGGACTCCTCATCTTGATGGGCTTCTCCCAAAT 162
Query 139 GGGGACTTTGAGAAAATTCCTAACAAATCAAACATGAGAAAGAGACAAATAATTGGCAAA 198
||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 163 GGGAACTTTGAGCAAATTCCTAACAAATCAAACATGAGAAAGAGGCAAATAATTGGCAAA 222
Query 199 TACTCTCTTCCCCATTGGGAAATCTCTGGCCACGTCGAGTTAGTCTCCGGCGGTCCACAG 258
||||||||||| |||||||||||||| |||||||| ||| ||||||| ||||||||||||
Sbjct 223 TACTCTCTTCCACATTGGGAAATCTCCGGCCACGTAGAGCTAGTCTCTGGCGGTCCACAG 282
Query 259 CCGGGCGGTTTCTATTTCGCGGTGCCACGTGGAGTCCACGCAGCTAGGCTAGGAAACTTA 318
|| || ||||| || ||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 283 CCCGGTGGTTTTTACTTCGCAGTGCCACGTGGAGTCCACGCAGCTAGGCTAGGGAACTTA 342
Query 319 GCATCAATATCTCAATATGTTAAAGTGAAACGTGGCTTGGTCTATTCTTTAACGTTTGGT 378
|||||||||||||| ||||| ||||||||| | ||||||||||||||| |||||||||||
Sbjct 343 GCATCAATATCTCAGTATGTGAAAGTGAAAAGCGGCTTGGTCTATTCTCTAACGTTTGGT 402
Query 379 GTCACGAGGACTTGTGCTCAAGACGAGAACATCAGAATCTCTGTGCCCGGTCAGACCAAT 438
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 403 GTCACGAGGACTTGTGCTCAAGACGAGAACATCAGAATCTCTGTGCCTGGTCAGACCAAT 462
Query 439 GAGCTACCAATCCAAACATTGTTCAGTACCAATGGTGGTGATACGTACGCTTGGGCTTTT 498
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 463 GAGCTACCAATCCAAACATTGTTCAGTACCAACGGTGGTGATACGTACGCATGGGCTTTT 522
Query 499 AAGGCAACGTCTGATTTGGTTAAGGTCACTTTCCATAATCCTGGTGTTCAGGAAGATCCC 558
|||||||||||||| ||||||||||||||||| |||||||||||||||| ||||| |||
Sbjct 523 AAGGCAACGTCTGACTTGGTTAAGGTCACTTTTTATAATCCTGGTGTTCAAGAAGA-CCC 581
Query 559 -ACTTGTGGCCCAATCGTTGACGCTGTTGCCATTAAGGAGATTCTTCCTCTCCGGTATAC 617
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 582 TACTTGTGGCCCAATCGTTGACGCTGTTGCCATTAAGGAGATTCTTCCTCTCCGGTATAC 641
Query 618 CAAAGGAAACCTTGTGAAAAACGGCGGATTTGAGACCGGTCCACACGTATTCAGCAACTT 677
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 642 CAAAGGGAACCTTGTGAAAAACGGCGGATTTGAGACCGGTCCACACGTATTCAGCAACTT 701
Query 678 TTCTACCGGAATTTTAATTCCGGCTAAGATACAAGACCTAATTTCACCGCTTCCGGGATG 737
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 702 CTCTACCGGAATTTTAATTCCGGCGAAGATACAAGACCTAATCTCACCGCTTCCGGGATG 761
Query 738 GATCGTCGAATCTCTAAAACCGGTCAAGTACATCGATAACCGCCACTTCAAGGTCCCCTC 797
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 762 GATCGTCGAATCTCTAAAACCGGTTAAGTACATCGATAACCGCCACTTCAAGGTTCCCTC 821
Query 798 AGGACTCGCCGCAATCGAGCTCGTCT-CCGGAAGAGAAAGTGCCATCGCTCAGATCATCC 856
||| ||||| ||||||||||| || | ||||||||||||| || ||||||||||||||||
Sbjct 822 AGGTCTCGCAGCAATCGAGCTTGT-TGCCGGAAGAGAAAGCGCAATCGCTCAGATCATCC 880
Query 857 GTACCGTCTCCGGTAGAAACTACATTCTCTCATTCGCGGTTGGAGACGCGCACAATGGTT 916
||||||||||||||| ||||||||||||||| || | || |||||||| ||||||||||
Sbjct 881 GTACCGTCTCCGGTAAAAACTACATTCTCTCGTTTGTTGTGGGAGACGCACACAATGGTT 940
Query 917 GTCACGGATCGATGATGGTGGAGGCGTTTGTGGGAAAATCGGCGTTTAAGGTTGCGTTCG 976
|||||||||||||||||||||||||||||| ||||| |||||||||||||||| | ||||
Sbjct 941 GTCACGGATCGATGATGGTGGAGGCGTTTGCGGGAATATCGGCGTTTAAGGTTACATTCG 1000
Query 977 AATCTAATGATAAAGGAGCGTTCAAAGCGGGGCGTTTCACGTTTCGGGCCGATTCGAATC 1036
||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||
Sbjct 1001 AATCTAATGATAAAGGAGCGTTCAAAGTGGGGCGTTTCGCGTTTCGTGCCGATTCGAATC 1060
Query 1037 GCACGAGGATAACTTTCTATAGTGGGTTTTATCATACCAAGCTTCATGATTTTGGACA-C 1095
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1061 GCACAAGGATAACTTTCTATAGTGGGTTTTATCATACCAAGCTTCATGATTTTGGACATC 1120
Query 1096 TTTTGTGGGCCGGTACTTGATAATGTTAGGGTTTTCCTGGCCCATTA 1142
||| ||||||| || |||||||||||||| ||||| ||||||||||
Sbjct 1121 TTT-GTGGGCCTGTGCTTGATAATGTTAGTGTTTTTTTGGCCCATTA 1166
> AT2G41800.1 | Symbols: | Protein of unknown function, DUF642
| chr2:17436529-17438040 REVERSE LENGTH=1290
Length=1290
Score = 688 bits (372), Expect = 0.0
Identities = 837/1056 (79%), Gaps = 54/1056 (5%)
Strand=Plus/Plus
Query 114 TCATCTTGATGGGCTTCTTCCAAATGGGGACTTTGAGAAAATTCCTAACAAATCAAACAT 173
|||||| || ||| |||| |||||||| |||| |||| || ||| ||||||||||||
Sbjct 119 TCATCTAGACGGGATTCTCCCAAATGGAAACTTCGAGATAACCCCTCTCAAATCAAACAT 178
Query 174 GAGAAAG-AGACAAATAAT--TGGCAAATACTCTCTTCCCCATTGGGAAATCTCTGGCCA 230
|| | | |||||||||| ||| | |||||||||| |||||||||||| | || ||
Sbjct 179 GA-AGGGTCGACAAATAATCGGGGC-TA-ACTCTCTTCCTCATTGGGAAATCGCCGGGCA 235
Query 231 CGTCGAGTTAGTCTCCGGCGGTCCACAGCCGGGCGGTTTCTATTTCGCGGTGCCACGTGG 290
||| ||| |||||||||| || || ||||| || || ||||||||| | || ||||||||
Sbjct 236 CGTGGAGCTAGTCTCCGGTGGACCTCAGCCTGGAGGATTCTATTTCCCCGTTCCACGTGG 295
Query 291 AGTCCACGCAGCTAGGCTAGGAAACTT-AGCATCAATATCTCA-ATATGTTAAAGTGAA- 347
||||||||| | ||| || |||||||| ||| | || ||||| | | || | |||||
Sbjct 296 AGTCCACGCGGTTAGACTCGGAAACTTGGGCA-CCATCTCTCAGA-ACGTGAGGGTGAAG 353
Query 348 ACGTGGCTTGGTCTATTCTTTAACGTTTGGTGTC-ACGAGGACTTGTGCTCAAGACGAGA 406
| |||| |||||||| ||| ||||||| || | | ||||||||||||||||| || ||||
Sbjct 354 A-GTGGTTTGGTCTACTCTCTAACGTTCGGAG-CTACGAGGACTTGTGCTCAGGATGAGA 411
Query 407 ACATCAGAA-TCTCTGTGCCCGGTCAGACCAATGAGCTACCAATCCAAACATTGTTCAG- 464
|||||| || |||||||||| |||||| |||||||||| || |||| || | || ||
Sbjct 412 ACATCA-AAGTCTCTGTGCCTGGTCAGGCCAATGAGCTTCCGCTCCAGACCGTCTTTAGC 470
Query 465 TACCAATGGTGGTGATACGTACGCTTGGGCTTTTAAGGCAACGTCTGATTTGGTTAAGGT 524
| || | ||||| || || |||||||||||||| |||||||| |||||| ||||||||||
Sbjct 471 T-CCGACGGTGGAGACACTTACGCTTGGGCTTTCAAGGCAACTTCTGATGTGGTTAAGGT 529
Query 525 CACTTTCCATAATCCTGGTGTTCAGGAAGATCC-CACTTGTGGCCCAATCGTT-GACGCT 582
|||||||||||| ||||||||||| ||||| || ||| ||||| || || || || | |
Sbjct 530 CACTTTCCATAACCCTGGTGTTCAAGAAGA-CCGCACGTGTGGACCTCTC-TTAGATGTT 587
Query 583 GTTGCCATTAAGGAGATTCTTCCTCTCCGGTATACCAAAGGAAACCTTG-TGAAAAACGG 641
|| || || |||||||||||||||||||||||||||| ||||||| ||| ||||||| ||
Sbjct 588 GTCGCAATCAAGGAGATTCTTCCTCTCCGGTATACCAGAGGAAAC-TTGGTGAAAAATGG 646
Query 642 CGGATTTGAGACCGGTCCACACGTATTCAGC-AACTTT-TCTACCGGAATTTTAATTCCG 699
||||| |||| ||||||||| || ||| || || ||| || |||||||| || |||||
Sbjct 647 AGGATTCGAGATCGGTCCACATGTTTTC-GCTAA-TTTCTCAACCGGAATCTTGATTCCA 704
Query 700 GCTAAGA-TACAAGACCTAATTTCACCGCTTCCGGGATGGATCGTCGAATCTCTAAAACC 758
|| |||| | |||||| | || || || ||||||||||||||||||||||| || |||||
Sbjct 705 GC-AAGAATCCAAGACTTCATCTCTCCTCTTCCGGGATGGATCGTCGAATCCCTTAAACC 763
Query 759 GGTCAAGTACATCGATA-ACCGCCACTTCAAGGTCCCCTCA-GGACTCGCCGCAATCGAG 816
|| ||||| ||||||| || | || ||||| || || | | |||| | || |||||
Sbjct 764 AGTGAAGTATATCGATAGAC-GTCATTTCAAAGTTCCTT-ATGGACAAGGGGCCGTCGAG 821
Query 817 CTCGTCT-CCGGAAGAGAAAGTGCCATCGCTCAGATCATCCGTACCGTCTCCGGTAGAAA 875
|| || | ||||||||||||| || || |||||||||||||| ||| || | |||| ||
Sbjct 822 CTAGT-TGCCGGAAGAGAAAGCGCAATAGCTCAGATCATCCGAACCATCGCTGGTA-AAG 879
Query 876 C-TACATTCTCTCATTCGCGGTTGGAGACGCGCACAATGGTTGTCACGGATCGATGATGG 934
| || || ||||||||||||||||| || || || || ||||| ||||| ||||||||||
Sbjct 880 CCTATATGCTCTCATTCGCGGTTGGTGATGCACAAAACGGTTGCCACGGGTCGATGATGG 939
Query 935 TGGAGGCGTTTGTGGGAA-A-ATCGGCGTTTAAGGTTGCGTTCGAA-TCT-AATGATAAA 990
|||| ||||| | |||| | | | |||||||| || | || | || || | ||||
Sbjct 940 TGGAAGCGTTCGCAGGAAGAGAAC--CGTTTAAGCTTTCTTTT-ATGTCAGAAGG-TAAA 995
Query 991 GGAGCGTTCAAAGCGGGGCGTTTCACGTTTCGG-GCCGATTCGAATCGCACGAGGATAAC 1049
|||||||||||| | |||| ||| | |||| | || |||||| |||| |||||| ||||
Sbjct 996 GGAGCGTTCAAAACAGGGCATTTTAGGTTT-GTTGCTGATTCGGATCGAACGAGGCTAAC 1054
Query 1050 -TTTCTATAGTGGGTTTTATCATACCAAGCTTCATGATTTTGGACA-CTTTTGTGGGCCG 1107
||| ||||||| |||||||||||| ||||||||||| || || || |||| |||||||
Sbjct 1055 GTTT-TATAGTGCGTTTTATCATACAAAGCTTCATGACTTCGGCCATCTTT-GTGGGCCT 1112
Query 1108 GTACTTGATAATGTTAGG-GTTTTCCTGGCCCATTA 1142
|| ||||||| ||| | ||| |||||||| |||
Sbjct 1113 GTTCTTGATAGCGTT-GTTGTTACCCTGGCCCGTTA 1147
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56124209310
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5