BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg483262 Length=1144 Score E Sequences producing significant alignments: (Bits) Value AT2G41810.1 | Symbols: | Protein of unknown function, DUF642 |... 1700 0.0 AT2G41800.1 | Symbols: | Protein of unknown function, DUF642 |... 688 0.0 > AT2G41810.1 | Symbols: | Protein of unknown function, DUF642 | chr2:17439374-17441350 REVERSE LENGTH=1207 Length=1207 Score = 1700 bits (920), Expect = 0.0 Identities = 1059/1127 (94%), Gaps = 6/1127 (1%) Strand=Plus/Plus Query 19 TAAATGCTCACAATGTCTCTCGTTCTCTCTCTTTGCTTGGCCTTCCTTTGTTCTTTTGTT 78 |||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct 43 TAAAAGCTCACAATGTCTCTCGTTCTCTCTCTTTGCTTGGTCTTCCTTTGTTCTCTTGTT 102 Query 79 CATGGTTCTCATAGCTTACCAGCACAACGGACTCTTCATCTTGATGGGCTTCTTCCAAAT 138 |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| Sbjct 103 CATGGTTCTCATAGCTTACCAGCACAACGGACTCCTCATCTTGATGGGCTTCTCCCAAAT 162 Query 139 GGGGACTTTGAGAAAATTCCTAACAAATCAAACATGAGAAAGAGACAAATAATTGGCAAA 198 ||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 163 GGGAACTTTGAGCAAATTCCTAACAAATCAAACATGAGAAAGAGGCAAATAATTGGCAAA 222 Query 199 TACTCTCTTCCCCATTGGGAAATCTCTGGCCACGTCGAGTTAGTCTCCGGCGGTCCACAG 258 ||||||||||| |||||||||||||| |||||||| ||| ||||||| |||||||||||| Sbjct 223 TACTCTCTTCCACATTGGGAAATCTCCGGCCACGTAGAGCTAGTCTCTGGCGGTCCACAG 282 Query 259 CCGGGCGGTTTCTATTTCGCGGTGCCACGTGGAGTCCACGCAGCTAGGCTAGGAAACTTA 318 || || ||||| || ||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 283 CCCGGTGGTTTTTACTTCGCAGTGCCACGTGGAGTCCACGCAGCTAGGCTAGGGAACTTA 342 Query 319 GCATCAATATCTCAATATGTTAAAGTGAAACGTGGCTTGGTCTATTCTTTAACGTTTGGT 378 |||||||||||||| ||||| ||||||||| | ||||||||||||||| ||||||||||| Sbjct 343 GCATCAATATCTCAGTATGTGAAAGTGAAAAGCGGCTTGGTCTATTCTCTAACGTTTGGT 402 Query 379 GTCACGAGGACTTGTGCTCAAGACGAGAACATCAGAATCTCTGTGCCCGGTCAGACCAAT 438 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 403 GTCACGAGGACTTGTGCTCAAGACGAGAACATCAGAATCTCTGTGCCTGGTCAGACCAAT 462 Query 439 GAGCTACCAATCCAAACATTGTTCAGTACCAATGGTGGTGATACGTACGCTTGGGCTTTT 498 |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct 463 GAGCTACCAATCCAAACATTGTTCAGTACCAACGGTGGTGATACGTACGCATGGGCTTTT 522 Query 499 AAGGCAACGTCTGATTTGGTTAAGGTCACTTTCCATAATCCTGGTGTTCAGGAAGATCCC 558 |||||||||||||| ||||||||||||||||| |||||||||||||||| ||||| ||| Sbjct 523 AAGGCAACGTCTGACTTGGTTAAGGTCACTTTTTATAATCCTGGTGTTCAAGAAGA-CCC 581 Query 559 -ACTTGTGGCCCAATCGTTGACGCTGTTGCCATTAAGGAGATTCTTCCTCTCCGGTATAC 617 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 582 TACTTGTGGCCCAATCGTTGACGCTGTTGCCATTAAGGAGATTCTTCCTCTCCGGTATAC 641 Query 618 CAAAGGAAACCTTGTGAAAAACGGCGGATTTGAGACCGGTCCACACGTATTCAGCAACTT 677 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 642 CAAAGGGAACCTTGTGAAAAACGGCGGATTTGAGACCGGTCCACACGTATTCAGCAACTT 701 Query 678 TTCTACCGGAATTTTAATTCCGGCTAAGATACAAGACCTAATTTCACCGCTTCCGGGATG 737 ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct 702 CTCTACCGGAATTTTAATTCCGGCGAAGATACAAGACCTAATCTCACCGCTTCCGGGATG 761 Query 738 GATCGTCGAATCTCTAAAACCGGTCAAGTACATCGATAACCGCCACTTCAAGGTCCCCTC 797 |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 762 GATCGTCGAATCTCTAAAACCGGTTAAGTACATCGATAACCGCCACTTCAAGGTTCCCTC 821 Query 798 AGGACTCGCCGCAATCGAGCTCGTCT-CCGGAAGAGAAAGTGCCATCGCTCAGATCATCC 856 ||| ||||| ||||||||||| || | ||||||||||||| || |||||||||||||||| Sbjct 822 AGGTCTCGCAGCAATCGAGCTTGT-TGCCGGAAGAGAAAGCGCAATCGCTCAGATCATCC 880 Query 857 GTACCGTCTCCGGTAGAAACTACATTCTCTCATTCGCGGTTGGAGACGCGCACAATGGTT 916 ||||||||||||||| ||||||||||||||| || | || |||||||| |||||||||| Sbjct 881 GTACCGTCTCCGGTAAAAACTACATTCTCTCGTTTGTTGTGGGAGACGCACACAATGGTT 940 Query 917 GTCACGGATCGATGATGGTGGAGGCGTTTGTGGGAAAATCGGCGTTTAAGGTTGCGTTCG 976 |||||||||||||||||||||||||||||| ||||| |||||||||||||||| | |||| Sbjct 941 GTCACGGATCGATGATGGTGGAGGCGTTTGCGGGAATATCGGCGTTTAAGGTTACATTCG 1000 Query 977 AATCTAATGATAAAGGAGCGTTCAAAGCGGGGCGTTTCACGTTTCGGGCCGATTCGAATC 1036 ||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||| Sbjct 1001 AATCTAATGATAAAGGAGCGTTCAAAGTGGGGCGTTTCGCGTTTCGTGCCGATTCGAATC 1060 Query 1037 GCACGAGGATAACTTTCTATAGTGGGTTTTATCATACCAAGCTTCATGATTTTGGACA-C 1095 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1061 GCACAAGGATAACTTTCTATAGTGGGTTTTATCATACCAAGCTTCATGATTTTGGACATC 1120 Query 1096 TTTTGTGGGCCGGTACTTGATAATGTTAGGGTTTTCCTGGCCCATTA 1142 ||| ||||||| || |||||||||||||| ||||| |||||||||| Sbjct 1121 TTT-GTGGGCCTGTGCTTGATAATGTTAGTGTTTTTTTGGCCCATTA 1166 > AT2G41800.1 | Symbols: | Protein of unknown function, DUF642 | chr2:17436529-17438040 REVERSE LENGTH=1290 Length=1290 Score = 688 bits (372), Expect = 0.0 Identities = 837/1056 (79%), Gaps = 54/1056 (5%) Strand=Plus/Plus Query 114 TCATCTTGATGGGCTTCTTCCAAATGGGGACTTTGAGAAAATTCCTAACAAATCAAACAT 173 |||||| || ||| |||| |||||||| |||| |||| || ||| |||||||||||| Sbjct 119 TCATCTAGACGGGATTCTCCCAAATGGAAACTTCGAGATAACCCCTCTCAAATCAAACAT 178 Query 174 GAGAAAG-AGACAAATAAT--TGGCAAATACTCTCTTCCCCATTGGGAAATCTCTGGCCA 230 || | | |||||||||| ||| | |||||||||| |||||||||||| | || || Sbjct 179 GA-AGGGTCGACAAATAATCGGGGC-TA-ACTCTCTTCCTCATTGGGAAATCGCCGGGCA 235 Query 231 CGTCGAGTTAGTCTCCGGCGGTCCACAGCCGGGCGGTTTCTATTTCGCGGTGCCACGTGG 290 ||| ||| |||||||||| || || ||||| || || ||||||||| | || |||||||| Sbjct 236 CGTGGAGCTAGTCTCCGGTGGACCTCAGCCTGGAGGATTCTATTTCCCCGTTCCACGTGG 295 Query 291 AGTCCACGCAGCTAGGCTAGGAAACTT-AGCATCAATATCTCA-ATATGTTAAAGTGAA- 347 ||||||||| | ||| || |||||||| ||| | || ||||| | | || | ||||| Sbjct 296 AGTCCACGCGGTTAGACTCGGAAACTTGGGCA-CCATCTCTCAGA-ACGTGAGGGTGAAG 353 Query 348 ACGTGGCTTGGTCTATTCTTTAACGTTTGGTGTC-ACGAGGACTTGTGCTCAAGACGAGA 406 | |||| |||||||| ||| ||||||| || | | ||||||||||||||||| || |||| Sbjct 354 A-GTGGTTTGGTCTACTCTCTAACGTTCGGAG-CTACGAGGACTTGTGCTCAGGATGAGA 411 Query 407 ACATCAGAA-TCTCTGTGCCCGGTCAGACCAATGAGCTACCAATCCAAACATTGTTCAG- 464 |||||| || |||||||||| |||||| |||||||||| || |||| || | || || Sbjct 412 ACATCA-AAGTCTCTGTGCCTGGTCAGGCCAATGAGCTTCCGCTCCAGACCGTCTTTAGC 470 Query 465 TACCAATGGTGGTGATACGTACGCTTGGGCTTTTAAGGCAACGTCTGATTTGGTTAAGGT 524 | || | ||||| || || |||||||||||||| |||||||| |||||| |||||||||| Sbjct 471 T-CCGACGGTGGAGACACTTACGCTTGGGCTTTCAAGGCAACTTCTGATGTGGTTAAGGT 529 Query 525 CACTTTCCATAATCCTGGTGTTCAGGAAGATCC-CACTTGTGGCCCAATCGTT-GACGCT 582 |||||||||||| ||||||||||| ||||| || ||| ||||| || || || || | | Sbjct 530 CACTTTCCATAACCCTGGTGTTCAAGAAGA-CCGCACGTGTGGACCTCTC-TTAGATGTT 587 Query 583 GTTGCCATTAAGGAGATTCTTCCTCTCCGGTATACCAAAGGAAACCTTG-TGAAAAACGG 641 || || || |||||||||||||||||||||||||||| ||||||| ||| ||||||| || Sbjct 588 GTCGCAATCAAGGAGATTCTTCCTCTCCGGTATACCAGAGGAAAC-TTGGTGAAAAATGG 646 Query 642 CGGATTTGAGACCGGTCCACACGTATTCAGC-AACTTT-TCTACCGGAATTTTAATTCCG 699 ||||| |||| ||||||||| || ||| || || ||| || |||||||| || ||||| Sbjct 647 AGGATTCGAGATCGGTCCACATGTTTTC-GCTAA-TTTCTCAACCGGAATCTTGATTCCA 704 Query 700 GCTAAGA-TACAAGACCTAATTTCACCGCTTCCGGGATGGATCGTCGAATCTCTAAAACC 758 || |||| | |||||| | || || || ||||||||||||||||||||||| || ||||| Sbjct 705 GC-AAGAATCCAAGACTTCATCTCTCCTCTTCCGGGATGGATCGTCGAATCCCTTAAACC 763 Query 759 GGTCAAGTACATCGATA-ACCGCCACTTCAAGGTCCCCTCA-GGACTCGCCGCAATCGAG 816 || ||||| ||||||| || | || ||||| || || | | |||| | || ||||| Sbjct 764 AGTGAAGTATATCGATAGAC-GTCATTTCAAAGTTCCTT-ATGGACAAGGGGCCGTCGAG 821 Query 817 CTCGTCT-CCGGAAGAGAAAGTGCCATCGCTCAGATCATCCGTACCGTCTCCGGTAGAAA 875 || || | ||||||||||||| || || |||||||||||||| ||| || | |||| || Sbjct 822 CTAGT-TGCCGGAAGAGAAAGCGCAATAGCTCAGATCATCCGAACCATCGCTGGTA-AAG 879 Query 876 C-TACATTCTCTCATTCGCGGTTGGAGACGCGCACAATGGTTGTCACGGATCGATGATGG 934 | || || ||||||||||||||||| || || || || ||||| ||||| |||||||||| Sbjct 880 CCTATATGCTCTCATTCGCGGTTGGTGATGCACAAAACGGTTGCCACGGGTCGATGATGG 939 Query 935 TGGAGGCGTTTGTGGGAA-A-ATCGGCGTTTAAGGTTGCGTTCGAA-TCT-AATGATAAA 990 |||| ||||| | |||| | | | |||||||| || | || | || || | |||| Sbjct 940 TGGAAGCGTTCGCAGGAAGAGAAC--CGTTTAAGCTTTCTTTT-ATGTCAGAAGG-TAAA 995 Query 991 GGAGCGTTCAAAGCGGGGCGTTTCACGTTTCGG-GCCGATTCGAATCGCACGAGGATAAC 1049 |||||||||||| | |||| ||| | |||| | || |||||| |||| |||||| |||| Sbjct 996 GGAGCGTTCAAAACAGGGCATTTTAGGTTT-GTTGCTGATTCGGATCGAACGAGGCTAAC 1054 Query 1050 -TTTCTATAGTGGGTTTTATCATACCAAGCTTCATGATTTTGGACA-CTTTTGTGGGCCG 1107 ||| ||||||| |||||||||||| ||||||||||| || || || |||| ||||||| Sbjct 1055 GTTT-TATAGTGCGTTTTATCATACAAAGCTTCATGACTTCGGCCATCTTT-GTGGGCCT 1112 Query 1108 GTACTTGATAATGTTAGG-GTTTTCCTGGCCCATTA 1142 || ||||||| ||| | ||| |||||||| ||| Sbjct 1113 GTTCTTGATAGCGTT-GTTGTTACCCTGGCCCGTTA 1147 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56124209310 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5