BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg483264 Length=3760 Score E Sequences producing significant alignments: (Bits) Value AT2G41830.1 | Symbols: | Uncharacterized protein | chr2:174501... 5594 0.0 > AT2G41830.1 | Symbols: | Uncharacterized protein | chr2:17450109-17457087 REVERSE LENGTH=3830 Length=3830 Score = 5594 bits (3029), Expect = 0.0 Identities = 3400/3575 (95%), Gaps = 42/3575 (1%) Strand=Plus/Plus Query 54 TATCAGAGCTCAAAGCTTCGCCGGACGATCCGGCGACTAAATTCC-ACTGAGAGAAACAA 112 |||||||||| |||||||||||||||||||||||||||||| ||| |||||||| || || Sbjct 102 TATCAGAGCTAAAAGCTTCGCCGGACGATCCGGCGACTAAA-TCCTACTGAGAG-AATAA 159 Query 113 TCTCCGTTCTCTCagagagagagagagagagGGTTTCGAGTTTTCTGGTGCGTCGCCGAT 172 |||| |||||| ||||||||| | ||||||||||||||||||||| ||||||||| Sbjct 160 --TCCGGTCTCTC----AGAGAGAGA-A-AGGGTTTCGAGTTTTCTGGTGTGTCGCCGAT 211 Query 173 CAATTTTCAGTTACCGGTTGGCTTATTTGTGCTTTGATCTGAGGCGAAGGTTTGAGTTTT 232 || |||||||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct 212 CAGTTTTCAGTTACCAACTGGCTTATTTGTGCTTTGATCTGAGGCGAAGGTTTGAGTTCT 271 Query 233 AAGGAGTGCCTCGTTTAATCATCGAGCTCTGTTTTCCTTCTTGCCCGAGGAAGCTCTAGG 292 |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 272 AAGGAGTGTATCGTTTAATCATCGAGCTCTGTTTTCCTTCTTTCCCGAGGAAGCTCTAGG 331 Query 293 GCTTTTTCGGTGGATCAAGAGGGACGGA--G-GG-TTAATAGATTCAACAGGATTT-TGA 347 |||||||||||||||||||||||| ||| | || |||| | | || | ||||| | Sbjct 332 GCTTTTTCGGTGGATCAAGAGGGAGGGAGGGAGGATTAACA-CGTAAATAAGATTTAACA 390 Query 348 GGAATTTTGATTGATCAGTGGttt-tttttATC--TGAGTAGTAGAAATGAGCTCAGTCT 404 |||| |||| || | | ||| || |||| ||||||| |||||||||| |||||| Sbjct 391 GGAA-TTTG-CGGA--A-T--TTTGATTATATCAGTGAGTAGAAGAAATGAGCGCAGTCT 443 Query 405 CGGGTGTAATCTCGAGGCAAGTTTTGCCTGTTTGTGGTAGCCTTTGTATTCTTTGCCCTG 464 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 444 CGGGTGTAATCTCGAGGCAAGTTTTGCCTGTTTGTGGTAGCCTTTGTATTCTTTGCCCTG 503 Query 465 CGCTTCGTGCAAGATCTAGACAGCCTGTGAAGAGGTACAAGAAGCTCATTGCTGATATAT 524 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || | Sbjct 504 CGCTTCGTGCAAGGTCTAGACAGCCTGTGAAGAGGTACAAGAAGCTCATTGCTGAGATTT 563 Query 525 TTCCTCGTAATCAGGAGGAAGGCATAAATGATCGAAAGATTGGAAAATTATGTGAATATG 584 |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| Sbjct 564 TTCCTCGTAATCAGGAGGAAGGCATAAATGATCGAAAGATAGGAAAATTATGTGAGTATG 623 Query 585 CTGCAAAGAACGCTGTGCGTATGCCAAAGATATCAGATTCTCTGGAACAAAGATGTTACA 644 ||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||| Sbjct 624 CTGCAAAAAACGCTGTGCGTATGCCAAAGATATCAGATTCCCTGGAACATAGATGTTACA 683 Query 645 AGGAACTGAGGAATGAGAATTTCCACTCGGCAAAGATAGCCATGTGTATTTACAGAAGGC 704 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 684 AGGAATTGAGGAATGAGAATTTCCACTCGGCAAAGATAGCCATGTGTATTTACAGAAGGC 743 Query 705 TTCTGGTCACTTGTAAGGAGCAAATACCTCTTTTTTCTAGTGGTTTCCTAAGGACGGTGC 764 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 744 TTCTGGTCACTTGTAAGGAGCAAATACCTCTATTTTCTAGTGGTTTCCTAAGGACGGTGC 803 Query 765 AAGCTCTTTTGGATCAAACTCGACAAGATGAAATGCAAATAGTTGGGTGTCAGTCTCTTT 824 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 804 AAGCTCTTTTGGATCAAACTCGACAAGATGAAATGCAAATAGTTGGATGTCAGTCTCTTT 863 Query 825 TCGAATTTGTAATTAATCAGAAGGATGGCAGTTCCCTGTTTAACTTGGAAGGCTTTCTCC 884 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 864 TCGAATTTGTAATTAATCAGAAGGATGGCAGTTCCCTATTTAACTTGGAAGGCTTTCTCC 923 Query 885 CAAAGCTGTGCCAATTAGGACTGGAAGGTGGGGATGATGATAGGTCGCGGAGCCTGCGTG 944 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 924 CAAAGCTGTGCCAATTAGGACTGGAAGGTGGGGATGATGACAGGTCGCGGAGCCTGCGTG 983 Query 945 CCGCAGGACTTCAAGCCCTTTCAGCAATGATTTGGCTGATGGGTGAATACTCTCATATTC 1004 | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 984 CAGCGGGACTTCAAGCCCTTTCAGCAATGATTTGGCTGATGGGTGAATACTCTCATATTC 1043 Query 1005 CCAGCGACTTTGACAATGTTGTCTCAGCAGTCTTGGAAAATTATGGCCACCCCAAAATAC 1064 |||| || ||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct 1044 CCAGTGAATTTGACAATGTTGTCTCAGCAGTCTTGGAAAATTACGGTCACCCCAAAATA- 1102 Query 1065 TT-ACAAATGCTAATGATAGTGGCAGAAAATGGGTGGATGAAGTCTTGAAAAACGAAGGT 1123 || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1103 TTAACAAATGCTAATGATAGTGGCAGAAAATGGGTGGATGAAGTATTGAAAAACGAAGGT 1162 Query 1124 CATGTAGCTTATGCAGATTCCCTCATAAATGTTCCTTCTTGGAGAACGGTTGTGAATGAC 1183 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1163 CATGTAGCTTATGAAGATTCCCTCATAAATGTTCCTTCTTGGAGAACGGTTGTGAATGAC 1222 Query 1184 AAGGGTGAACTAAATGTGAAAATGGAAGATTCCTTGGACCCTAGCTTTTGGTCCAAGGTT 1243 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1223 AAGGGTGAACTAAATGTGAAAATGGAAGATTCCTTGGACCCTAGCTTTTGGTCTAAGGTT 1282 Query 1244 TGTCTACACAACATGGCCAAGCTAGGTGAAGAGGCCACAACAATGAGACGCATACTTGAG 1303 || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1283 TGCCTACACAACATGGCCAAGCTAGGTGAAGAGGCCACAACAATGAGACGTATACTTGAG 1342 Query 1304 TCTTTGTTCCGTTACTTTGACGAGGGATGTCTGTGGTCAACAGAAAATTCGATTGCATTC 1363 |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1343 TCTTTGTTCCGTAACTTTGACGAGGGATGTCTATGGTCAACAGAAAATTCGATTGCATTC 1402 Query 1364 CCTGTTTTAAGGGATCTGCAGTTTTTAATGGAAATATCTGGGCAAAGAACACACTTTCTA 1423 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1403 CCTGTTTTAAGGGATCTGCAGTTTTTAATGGAAATATCTGGGCAAAGAACACACTTTCTA 1462 Query 1424 CTGTCTATGTTGATCAAACACCTTGATCATAAAAGTGTGCTTAAACACCCAAGCATGCAG 1483 || ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1463 CTTTCTATGTTGATTAAACACCTTGACCATAAAAGTGTGCTTAAACACCCAAGCATGCAG 1522 Query 1484 CTCAACATTTTAGAGGTTACCTCCTCCCTTTCTGAAAATGCAAAAGTTGAGCACTCCGCA 1543 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| Sbjct 1523 CTCAACATTTTAGAGGTTACCTCCTCCCTTTCTGAAACTGCAAAAGTTGAGCACTCTGCA 1582 Query 1544 GCAATAGTCAGTGCAATAAGTGATGTCATGAGGCACTTGAGAAAATGCATGCATTCTTCT 1603 | |||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||| Sbjct 1583 ACGATAGTCAGCGCAATAAGCGATATCATGAGGCACTTGAGAAAATGCATGCATTCTTCT 1642 Query 1604 CTAGATGAAGCAAATATTGGAACTGACGCAGCAAACTGTATCAGAATGGTCAGTGTAGCT 1663 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1643 CTAGATGAAGCAAATCTTGGAACTGACGCAGCAAACTGTATCAGAATGGTCAGTGTAGCT 1702 Query 1664 GTTGATAAGTGCCTCGTCCAGCTAACGAAGAAGGTTGGAGATGCTGGCCCAATTCTAGAT 1723 |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| Sbjct 1703 GTTGATAAGTGCCTCGTCCAACTAACGAAAAAGGTTGGAGATGCTGGCCCAATTCTAGAT 1762 Query 1724 GCTATGGCTTTGATGTTGGAGAATATCTCCGCTGTCACAGACGTAGCAAGAACCACAATT 1783 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1763 GCTATGGCTTTGATGTTGGAGAATATCTCCGCTGTCACAGACGTAGCAAGAACCACAATT 1822 Query 1784 GCTGCTGTTTTTCGCACTGCTCAAATTATAGCCTCTATACCAAATCTACAATATCAAAAC 1843 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1823 GCTGCAGTTTTTCGCACTGCTCAAATTATAGCCTCTATACCAAATCTACAATATCAAAAC 1882 Query 1844 AAGGCTTTTCCCGAGGCCTTATTCCATCAGTTACTTCAAGCTATGGTCCATCCAGATCAT 1903 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 1883 AAGGCTTTTCCCGAGGCCTTGTTTCATCAGTTACTTCAAGCTATGGTCCATCCAGATCAT 1942 Query 1904 AAAACACGGATTGGCGCCCACCGTATATTTTCTGTTGTGCTGGTACCAACCTCAGTCTGC 1963 |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct 1943 AAAACACGGATTGGTGCTCACCGTATATTTTCTGTTGTGCTGGTACCAACCTCAGTCTGC 2002 Query 1964 CCCCGTCCTTCCTCGACCACTACTGACCTTAAGAAAGGAATGGGTCTTCCTCGTTCACTT 2023 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2003 CCTCGTCCTTCCTCGACCACTACTGACCTTAAGAAAGGAATGGGTCTTCCTCGTTCACTT 2062 Query 2024 TCAAGGACCGCTTCTGTCTTTTCCTCTTCAGCAGCCCTTTTCGAGAAGCTGAAGAAGGAT 2083 |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| Sbjct 2063 TCAAGGACCGCTTCTGTCTTTTCCTCCTCAGCAGCCCTATTCGAGAAGCTGAAGAAGGAT 2122 Query 2084 AAATTTTCATCGATGCTGACTTCTGATCAGAGCCAAAACGGAATGCCTGAGGAAGAATGT 2143 ||||||||||||||||||||||||||||| || |||||||||||||||||||||||| || Sbjct 2123 AAATTTTCATCGATGCTGACTTCTGATCATAGTCAAAACGGAATGCCTGAGGAAGAACGT 2182 Query 2144 GGAAGCACTACGGGGGAAATTCTTGACAGATTGAAATCTTCATACAGTCAGGCATATAGC 2203 ||||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||| Sbjct 2183 GGAAGCAGTACGGGGGAAATCCTTGACAGATTGAAATCTTCATACCGTCAGGCATATAGC 2242 Query 2204 ACTTGGAATCAACCAGTGACCTCGGTAGCAGATAACTCTGTGGATCTTTTAAACTCTGAG 2263 ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| Sbjct 2243 ACTTGGAATCAACCATTGACCTCGGTAGTAGATAACTCTGTGGATCTTTTAAACTCTGAG 2302 Query 2264 CTGGATGTTGTTCATATAAGGCTAAGTAGTCACCAGATAGGTCTTTTGCTTTCATCAATC 2323 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 2303 CTGGATGTTGTTCATATAAGACTAAGTAGTCACCAGATAGGTCTTTTGCTTTCATCAATC 2362 Query 2324 TGGGCACAGTCCATATCTCCGGCAAATACACCAGACAATTATGAGGCGATTGCTAACACC 2383 |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct 2363 TGGGCACAGTCCATATCTCCTGCAAATACACCAGACAATTATGAGGCAATTGCTAACACC 2422 Query 2384 TACAGTCTTGTATTGTTGTTCTCTCGTGTTAAGAACTCAAGTCACGACGCTTTGATTCGA 2443 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 2423 TACAGTCTTGTATTGTTGTTCTCTCGTGTTAAGAACTCAAGTCATGACGCTTTGATTCGA 2482 Query 2444 AGTTTTCAAATGGCACTTTCTTTGCGAGATATTTCTTTGATGGAAGGAGGACCACTTCCT 2503 ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 2483 AGTTTCCAAATGGCACTTTCTTTGCGAGATATTTCATTGATGGAAGGAGGACCACTTCCT 2542 Query 2504 CCATCTCGGCGAAGGTCACTCTTTACACTGGCTGCATCAATGGTTCTTTTTTCCTCAAAA 2563 |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 2543 CCATCTCGACGAAGGTCACTTTTTACACTGGCTGCATCAATGGTTCTTTTTTCCTCAAAA 2602 Query 2564 GCATTCAATCTTTTTTCTCTGGCGGATTTCACAAAATTAACACTTCAGGGACCAAGGCTT 2623 ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| Sbjct 2603 GCATTCAATCTTTTTTCTCTGGCGGATTTTACAAAAGTAACACTTCAGGGACCAAGGCTT 2662 Query 2624 GACCCATTTTTGAACTTGGTTGACGATCACAAGTTGAAGGCTATAAATTCAGATCAGCTA 2683 |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 2663 GACCCATTCTTGAACTTGGTTGACGATCACAAGTTGAAGGCTGTAAATTCAGATCAGCTA 2722 Query 2684 AAAGGTT-CTTATGGATGCGAAAAAGATGATGCTTCAGCTTTAGATACTCTTTCAAACAT 2742 ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2723 AAA-GTTGCTTATGGATGCGAAAAAGATGATGCTTCAGCTTTAGATACTCTTTCAAACAT 2781 Query 2743 AGCACTCTCCACTGAGCATAGCAGAGGAAACCTTGTCTATGAAATCGTCAAAAGCTTAGA 2802 |||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||| Sbjct 2782 AGCACTGTCCACTGAGCATAGCAGAGGAACCCTTGTCTATGAAATCGTCAAGAGCTTAGA 2841 Query 2803 AGATATGTGCAATTCTGAAATGGACAAAATGCGAGAGCAGTTGCTCACAGAATTTATGCC 2862 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2842 AGATATGTGCAATTCTGAAATGGACAAAATGCGAGAGCAGTTGCTCACAGAATTTATGCC 2901 Query 2863 AGATGATGCATGTCCACTTGGTACCCGGTTTTTAGAAGATACCCAAAAAACCTATCAGGT 2922 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | Sbjct 2902 AGATGATGCATGTCCACTTGGTACCCGGTTTTTAGAAGATACCCACAAAACCTATCAGAT 2961 Query 2923 TGATTCTGGAGATGTTAAATCTCAAAAGGTGGACGCGGAGGATCAAGAGTTTGGAGATGG 2982 ||||||||| ||||||||| ||| ||||| |||||||||||||||||||||||||||||| Sbjct 2962 TGATTCTGGTGATGTTAAACCTCGAAAGGAGGACGCGGAGGATCAAGAGTTTGGAGATGG 3021 Query 2983 CACCGAAACCGTTGCAAAGAATCA-TCCTGTAACATTTTCTGAAATCCCAGACCTCCTGA 3041 ||||||||||||| ||||||| || || |||||||||||||||||||||||||||||||| Sbjct 3022 CACCGAAACCGTTACAAAGAA-CAATCATGTAACATTTTCTGAAATCCCAGACCTCCTGA 3080 Query 3042 CCGTCAATCAGATAT-TAGAATCTGTCGTTGAGACAACAGGTCAAGTGGGTAGAATATCC 3100 |||||||||| || | ||||||||||||| ||||||||| |||||||||||||||| ||| Sbjct 3081 CCGTCAATCAAAT-TCTAGAATCTGTCGTAGAGACAACACGTCAAGTGGGTAGAATTTCC 3139 Query 3101 TTCCATACTGCAGCTGATGCTTCATACAAAGAAATGACACTTCATTGTGAGAATCTGTTA 3160 |||||||||||||| ||||||||||||||||| ||||| || |||||||||||||||||| Sbjct 3140 TTCCATACTGCAGCCGATGCTTCATACAAAGAGATGACGCTGCATTGTGAGAATCTGTTA 3199 Query 3161 ATGGGAAAACAACAGAAGATCTCGAGTCTTTTAAATTCTCAGCTACGACATGAGAGTTCT 3220 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3200 ATGGGAAAACAGCAGAAGATCTCGAGTCTTTTAAATTCTCAGCTACGACATGAGAGTTCT 3259 Query 3221 GTTAACTGCTCTCCACGACAACATGATGAAGAGATTAAGATCGCAAGTTTCCATCCTATG 3280 ||||||||||||||||||||||||||||||||||| ||||| ||| ||| ||||||||| Sbjct 3260 GTTAACTGCTCTCCACGACAACATGATGAAGAGATCAAGATTGCATCTTTTCATCCTATG 3319 Query 3281 CTCAATCCAACATTTCATACTGAGGTCGAAGTCCCTTTACTGTCGAATTCCTTCGACATG 3340 ||||| || |||||||||||| |||||||||||||||||||||||| ||||||||| Sbjct 3320 ATCAATTCAGCATTTCATACTGGGGTCGAAGTCCCTTTACTGTCGAAAGAATTCGACATG 3379 Query 3341 AAATCGCCAAGAACACCAGTGGGAACTATTCAGTCACCGTGCTTTGCAGAACTACAAAAT 3400 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 3380 AAATCGCCAAGAACACCAGTGGGAACTATTCAGTCACCGTGCTATGCAGAACTACAAAAT 3439 Query 3401 AACCCACAAGCATTTAGACTACCAGCCTCAAGCCCTTACGACAACTTCCTTAAAGCTGCT 3460 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3440 AACCCACAAGCATTTAGACTACCAGCCTCAAGCCCTTACGACAACTTCCTTAAAGCTGCT 3499 Query 3461 GGCTGTTGATCATCGGCAGGATCCAAACCATTGTTTGGCTTTGAATTCCAGTCAAAAGAA 3520 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct 3500 GGCTGTTGATCATCGGCAGGATCCAAACCAT-GTTTGGCTTTGAATTCCAGTCAA--GAA 3556 Query 3521 CTCAAACaaaaaaaaTTAACAAAACTAGGTTTGCTTGGTTTTCAAAGTCTTGAGTTACAT 3580 ||||||||||| | | ||||||| ||||||||||||||||||||||||||| ||||| | Sbjct 3557 CTCAAACAAAACA--T-AACAAAAATAGGTTTGCTTGGTTTTCAAAGTCTTGGGTTACGT 3613 Query 3581 TTTT-TAGATTCTTTAGCATTATAAATCGGAATTA 3614 |||| ||||||||||||||| |||||||||||||| Sbjct 3614 TTTTATAGATTCTTTAGCATCATAAATCGGAATTA 3648 Score = 75.0 bits (40), Expect = 5e-12 Identities = 52/57 (91%), Gaps = 4/57 (7%) Strand=Plus/Plus Query 1 AAAAATAAAAATGAAGT----AGCAACGAAACGGCAGAAGGTGGAACCCGCGTCGTG 53 |||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct 11 AAAAATAAGAATGAAGTAGCAAGCAACGAAACGGCAGAAGGTGGAACCCGCGTCGTG 67 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 187273198219 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5