BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483266
Length=1161
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41840.1 | Symbols: | Ribosomal protein S5 family protein |... 1688 0.0
AT3G57490.1 | Symbols: | Ribosomal protein S5 family protein |... 721 0.0
> AT2G41840.1 | Symbols: | Ribosomal protein S5 family protein
| chr2:17459788-17461539 REVERSE LENGTH=1227
Length=1227
Score = 1688 bits (914), Expect = 0.0
Identities = 1100/1186 (93%), Gaps = 27/1186 (2%)
Strand=Plus/Plus
Query 1 AGAAACCCTAAAAATCCTTATTGTAGCAGCTGGAGCAATATATATCACAATTTGCCGCAA 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 AGAAACCCTAAAAATCCTTATTGTAGCAGCTGGAGCAATATATATCCCAATTTGCCGCAA 60
Query 61 CTAGGGTTTTCTCTTTCTCACACAACGCAACACATCG-A------AACCGATTCAGCAGC 113
||||||||||||||| ||||| ||| |||| |||||| | || |||||||||||
Sbjct 61 CTAGGGTTTTCTCTTCCTCACGCAAAGCAATACATCGCAGTCTCCCACTGATTCAGCAGC 120
Query 114 TC-TT-AA--ACTCTTCGAAAATGGCGGAACGTGGTGGAGAACGTGGTGTTGAGCGTGGT 169
|| || || ||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 121 TCTTTGAACTACTCTTCGACAATGGCCGAACGTGGTGGAGAACGTGGTGTTGAGCGTGGT 180
Query 170 GGAGAACGTGGTGGTCACGGACGTGGATTCGGA------GGAGGCCGTGGAGATCGTGGA 223
||||||||||||| | |||||| ||||||||| ||||| |||||||||||||||
Sbjct 181 GGAGAACGTGGTGATTTCGGACGAGGATTCGGAGGCCGTGGAGGTCGTGGAGATCGTGGA 240
Query 224 GGCCGTGGACGCGGAGGCC---GTGGTCGACGTGGAGGCCGTACCAGTGAAGAAGAGAAA 280
|| |||||||| ||||||| ||||||| |||||||| ||| |||||||||||||||||
Sbjct 241 GGGCGTGGACGTGGAGGCCGTGGTGGTCGTCGTGGAGGGCGTGCCAGTGAAGAAGAGAAA 300
Query 281 TGGGTTCCAGTGACCAAGCTTGGTCGTCTCGTGGCGGAC-GGTAGA-ATCAAGCAGATAG 338
||||||||||||||||||||||||||||||||||||| | ||| | |||||||||||||
Sbjct 301 TGGGTTCCAGTGACCAAGCTTGGTCGTCTCGTGGCGG-CTGGT-CATATCAAGCAGATAG 358
Query 339 AGCAGATCTATCTTCATTCACTCCCGGTTAAGGAGTATCAGATCATTGATATGCTCATCG 398
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 359 AGCAGATCTATCTTCATTCACTCCCGGTTAAGGAGTACCAGATCATTGATATGCTCATCG 418
Query 399 GTCCAACCTTGAAGGATGAGGTGATGAAGATCATGCCGGTTCAGAAACAAACCAGAGCTG 458
||||||| |||||||||||||| ||||| |||||||||||||||||||||||||| ||||
Sbjct 419 GTCCAACATTGAAGGATGAGGTAATGAAAATCATGCCGGTTCAGAAACAAACCAGGGCTG 478
Query 459 GTCAGAGAACTAGATTCAAGGCCTTTGTTGTCGTTGGAGATGGTAATGGTCATGTTGGAT 518
|||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 479 GTCAAAGGACTAGATTCAAGGCCTTTGTTGTCGTTGGAGATGGTAATGGTCATGTTGGGT 538
Query 519 TGGGAGTGAAATGCTCTAAGGAAGTTGCTACGGCGATTAGAGGAGCGATTATTCTCGCTA 578
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 539 TGGGAGTGAAATGCTCTAAGGAAGTTGCTACGGCCATTAGAGGAGCGATTATTCTCGCTA 598
Query 579 AGTTGTCTGTTGTTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACA 638
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 599 AGCTGTCTGTTGTTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACATA 658
Query 639 CGGTTCCTTGTAAGGTGACTGGCAAGTGTGGATCTGTGACAGTGAGGATGGTTCCAGCTC 698
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 659 CGGTTCCTTGTAAGGTGACTGGGAAGTGTGGATCTGTGACAGTGAGGATGGTTCCAGCTC 718
Query 699 CTAGAGGTGCGGGTATTGTGGCTGCTAGAGTTCCTAAGAAGGTTCTTCAATTCGCTGGAA 758
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 CTAGAGGTTCTGGTATTGTGGCTGCTAGAGTTCCTAAGAAGGTTCTTCAATTCGCTGGAA 778
Query 759 TTGATGATGTTTTCACTTCCTCCAGGGGATCTACCAAAACTCTCGGAAACTTCGTCAAGG 818
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 779 TTGATGATGTTTTCACTTCCTCCAGGGGATCCACCAAAACTCTTGGAAACTTCGTCAAGG 838
Query 819 CTACATTCGATTGCCTTCAGAAGACTTATGGATTCCTTACCCCAGAGTTCTGGAAAGAGA 878
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 839 CTACATTCGATTGCCTTCAGAAGACTTACGGATTCCTTACCCCAGAGTTCTGGAAGGAGA 898
Query 879 CGAGGTTCTCTAAATCACCATACCAAGAGTACACTGATTTCTTGGCGTCTAAGGCTCTTC 938
| || ||||||| |||||||||||||||| ||||||||||| ||||||| |||||||||
Sbjct 899 CAAGATTCTCTAGATCACCATACCAAGAGCACACTGATTTCCTGGCGTCCAAGGCTCTTT 958
Query 939 CGAGCAGCAAAACCGAGACGGTGGTTGAAGACCAAGCCTAAATAATGCTCCCACCTTGTG 998
||| ||||||| |||| | |||||||||||||||||||||| |||||| ||||||||||
Sbjct 959 CGACCAGCAAACCCGACCCAGTGGTTGAAGACCAAGCCTAAACAATGCTTCCACCTTGTG 1018
Query 999 TTCTGTTTGGATTATCATCTTTCATGAGTTAATTTTGGTTGAACCTTTGGTAGTATATGT 1058
|||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 TTCTTTTTGGATTATAATCCTTCATGAGTTAATTTTGGTTGAACCTTTGGTAGTATATGT 1078
Query 1059 TGCTGGATTGTGCACCTTATGTTTTCATCTC-T-T-CCAAACTACTTTATTTTTGCTTAT 1115
|||||||||||||||||| |||||||||||| | | ||||||||||||||||||||||||
Sbjct 1079 TGCTGGATTGTGCACCTTCTGTTTTCATCTCCTCTTCCAAACTACTTTATTTTTGCTTAT 1138
Query 1116 GGATCTTAATGTTCTAGCTTTGCTTTTTCTTATGTTGAGAAAAGTT 1161
||||||||||||||||| ||||||||| ||| ||||||||||||||
Sbjct 1139 GGATCTTAATGTTCTAGTTTTGCTTTTACTTTTGTTGAGAAAAGTT 1184
> AT3G57490.1 | Symbols: | Ribosomal protein S5 family protein
| chr3:21279666-21280948 REVERSE LENGTH=1050
Length=1050
Score = 721 bits (390), Expect = 0.0
Identities = 656/783 (84%), Gaps = 24/783 (3%)
Strand=Plus/Plus
Query 149 GAACGTGGTGTTGAGCGTGGTGGAGAACGTGGTGGTCACGGACGTGGATTCGGAGGAGGC 208
||||||||||| || ||||||||||| || || | | ||||||||||||| || ||
Sbjct 68 GAACGTGGTGTCGAACGTGGTGGAGATCGCGGCGATTTCGGACGTGGATTC---GGTGGT 124
Query 209 CGTGGAGATCGTGGAGGCCGTGGACGCG-GAGGCCGTGGTCGACGTGGAGGCCGT--ACC 265
|| || | ||||| | |||| | || |||| |||||||| |||| ||| ||| ||
Sbjct 125 CGCGGCG---GTGGAAGAGGTGGTC-CGAGAGGTCGTGGTCGCCGTGCAGGTCGTGCTCC 180
Query 266 AGTGAAGAAGAGAAATGGGTTCCAGTGACCAAGCTTGGTCGTCTCGTGGCGGACGGT-AG 324
| || || ||||||||||| |||||||| ||||||||||||||||| ||| ||| ||
Sbjct 181 A--GAGGAGGAGAAATGGGTGCCAGTGACTAAGCTTGGTCGTCTCGTAAAGGAAGGTAAG 238
Query 325 AATCA-AGCAGATAGAGCAGATCTATCTTCATTCACTCCCGGTTAAGGAGTATCAGATCA 383
|||| | |||| ||||||||||| || ||||| ||||| || |||||||| |||||||
Sbjct 239 -ATCACA-AAGATTGAGCAGATCTACCTCCATTCTCTCCCAGTCAAGGAGTACCAGATCA 296
Query 384 TTGATATGCTCATCGGTCCAACCTTGAAGGATGAGGTGATGAAGATCATGCCGGTTCAGA 443
| ||| | ||| ||||||| | ||||| || || |||||||| |||||||||||||| |
Sbjct 297 TAGATTTACTCGTCGGTCCTTCATTGAAAGACGAAGTGATGAAAATCATGCCGGTTCAAA 356
Query 444 AACAAACCAGAGCTGGTCAGAGAACTAGATTCAAGGCCTTTGTTGTCGTTGGAGATGGTA 503
||||||||||||| ||||||||||| |||||||||||||| | ||||| |||||| |||
Sbjct 357 AACAAACCAGAGCCGGTCAGAGAACGAGATTCAAGGCCTTCATCGTCGTCGGAGATAGTA 416
Query 504 ATGGTCATGTTGGATTGGGAGTGAAATGCTCTAAGGAAGTTGCTACGGCGATTAGAGGAG 563
| ||||| || ||||| ||||| |||||||| ||||||||||| |||||||| ||||| |
Sbjct 417 ACGGTCACGTCGGATTAGGAGTCAAATGCTCCAAGGAAGTTGCGACGGCGATCAGAGGCG 476
Query 564 CGATTATTCTCGCTAAGTTGTCTGTTGTTCCAG-TGA-GGAGAGGTTACTGGGGTAACAA 621
|||| |||||||| || |||||||| ||||| | | | | |||||||| |||||||||||
Sbjct 477 CGATCATTCTCGCGAAATTGTCTGTGGTTCC-GAT-ACGAAGAGGTTATTGGGGTAACAA 534
Query 622 GATTGGGAAGCCACACACGGTTCCTTGTAAGGTGACTGGCAAGTGTGGATCTGTGACAGT 681
|||||| || ||||| |||||||| |||||||| || || || ||||||||||| || ||
Sbjct 535 GATTGGAAAACCACATACGGTTCCGTGTAAGGTAACCGGGAAATGTGGATCTGTTACTGT 594
Query 682 GA-GGATGGTTCCAGCTCCTAGAGGTGCGGGTATTGTGGCTGCTAGAGTTCCTAAGAAGG 740
| | |||||||||||||| |||||| | ||||||||||| |||||||||||||||||||
Sbjct 595 -ACGTATGGTTCCAGCTCCGAGAGGTTCTGGTATTGTGGCGGCTAGAGTTCCTAAGAAGG 653
Query 741 TTCTTCAATTCGCTGGAATTGATGATGT-TTTCACTTCCTCCAGGGGATCTACCAAAACT 799
|||||||||||||||||||||||||||| ||| ||||| || || ||||| |||||||||
Sbjct 654 TTCTTCAATTCGCTGGAATTGATGATGTCTTT-ACTTCTTCTAGAGGATCCACCAAAACT 712
Query 800 CTCGGAAACTTCGTCAAGGCTACATTCGATTGCCTTCAGAAGACTTATGGATTCCTTACC 859
|| ||||||||||||||||| ||||| ||||| || |||||||| || |||||||||||
Sbjct 713 CTTGGAAACTTCGTCAAGGCAACATTTGATTGTCTGCAGAAGACATACGGATTCCTTACA 772
Query 860 CCAGAGTTCTGGAAAGAGACGAGGTTCTCTAAATCACCATACCAAGAGTACACTGATTTC 919
|| || ||||||||||||||||| ||||| |||||||||||||||||| |||||||||||
Sbjct 773 CCGGAATTCTGGAAAGAGACGAGATTCTCAAAATCACCATACCAAGAGCACACTGATTTC 832
Query 920 TTG 922
|||
Sbjct 833 TTG 835
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56977618575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5