BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg483267 Length=1493 Score E Sequences producing significant alignments: (Bits) Value AT2G41850.1 | Symbols: PGAZAT, ADPG2 | polygalacturonase abscis... 2176 0.0 > AT2G41850.1 | Symbols: PGAZAT, ADPG2 | polygalacturonase abscission zone A. thaliana | chr2:17461655-17464161 REVERSE LENGTH=1667 Length=1667 Score = 2176 bits (1178), Expect = 0.0 Identities = 1319/1388 (95%), Gaps = 6/1388 (0%) Strand=Plus/Plus Query 49 aaaaaaaaaaCACATATCCTTACCAATGGCCCGTTGTTCCAAACTTGTTACCGTTTTCCT 108 ||| ||||||||||| ||||| ||||||||||||||| |||| ||||||||||||||||| Sbjct 78 AAAGAAAAAACACATTTCCTTGCCAATGGCCCGTTGTACCAACCTTGTTACCGTTTTCCT 137 Query 109 ATTATGGGCTCTTTTGATGTTCTCATGGTGCAAAGGTTCAAGAATCAGCCCTAATGGATA 168 |||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||| Sbjct 138 ATTATGGGCTCTTTTGATGTTCTCATGGTGTAAAGCTTCAAGAATCAGCCCTAATGTATA 197 Query 169 TGATCATTCTTATAAAAGGTTCAAATCCGATAGCTTAATCAATCGAAAACAGGACATCAC 228 ||| |||||||||||||||||||||||||||||||||||||| |||| | |||||||||| Sbjct 198 TGACCATTCTTATAAAAGGTTCAAATCCGATAGCTTAATCAAGCGAAGAGAGGACATCAC 257 Query 229 GGGCTTGAGAAGTTTTGTAAGAGCCTCTTTGCGGACTCCAACCACAGTTAGTGTTTCTGA 288 ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 258 GGGATTGAGAAGTTTTGTAAGAGCCTCTTTGCGGACTCCAACCACCGTTAGTGTTTCTGA 317 Query 289 TTATGGAGCTAAAGGAGATGGAAAAACCGATGACACGCAGGCGTTCGTGAATGCGTGGAA 348 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 318 TTTTGGAGCTAAAGGAGATGGAAAAACCGATGACACGCAGGCGTTCGTGAATGCGTGGAA 377 Query 349 GAAAGCATGTTCTTCAAATGGAGCTGTTAATCTCCTAGTTCCTAAAGGGAATACTTATTT 408 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 378 GAAAGCATGTTCTTCAAATGGAGCTGTTAATCTCCTAGTTCCTAAAGGGAATACTTATCT 437 Query 409 CCTTAAGTCTATTCAATTAACTGGTCCATGCAGTTCTAT-CATTACCGTTCAGATGTTCG 467 |||||||||||||||||||||||||||||||| |||||| | | ||||||||||| |||| Sbjct 438 CCTTAAGTCTATTCAATTAACTGGTCCATGCAATTCTATTC-TCACCGTTCAGATATTCG 496 Query 468 GAACGTTATCCGCATCTCAAAAGCGAACGGATTACAAAGATATCAGCAAATGGATAATGT 527 |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct 497 GAACGTTATCCGCATCTCAAAAACGATCGGATTACAAAGATATCAGCAAATGGATAATGT 556 Query 528 TTGACGGCGTTAACAGTCTATCAGTCGATGGCGGCGGCACTGGGGTTGTGGACGGAAACG 587 |||| |||||||||| ||||||||||||||| |||| ||||||||||||||||||||||| Sbjct 557 TTGATGGCGTTAACAATCTATCAGTCGATGGAGGCGACACTGGGGTTGTGGACGGAAACG 616 Query 588 GCGAAACGTGGTGGCAAAACTCATGCAAACGGAACAAAGCTAAGCCATGCACAAAAGCCC 647 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 617 GCGAAACGTGGTGGCAAAACTCATGCAAACGGAACAAAGCTAAGCCATGCACAAAAGCCC 676 Query 648 CAACGGCTCTTACTTTCTACAACTCGAAAAGTCTGATAGTGAAAAATCTGAGGGTGAGAA 707 |||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||| Sbjct 677 CAACGGCTCTTACTTTTTACAACTCGAAAAGTCTGATAGTGAAGAATCTGAAGGTGAGAA 736 Query 708 ATGCACAGCAGATTCAGATTTCAATTGAAAAAAGCTCCAACGTTCAGGTCTCTAATGTCG 767 ||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||| Sbjct 737 ATGCACAGCAGATCCAGATTTCGATTGAAAAATGCTCCAACGTTCAGGTCTCTAATGTCG 796 Query 768 TGGTAACTGCGCCTGCGGATAGTCCTAACACCGATGGTATTCATATCACTAACACCCAAA 827 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 797 TGGTAACTGCGCCTGCGGATAGTCCTAACACCGATGGTATTCATATCACTAACACCCAAA 856 Query 828 ACATTCGAGTCTCCGACTCCATCATAGGAACAGGTGATGATTGCATATCTATTGAAAGTG 887 |||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||| Sbjct 857 ACATTCGAGTCTCCGAATCCATCATTGGAACAGGCGATGATTGCATATCTATTGAAAGTG 916 Query 888 GATCACAAAATGTTCAAATCAATGATATAACTTGCGGTCCTGGTCACGGTATCAGTATTG 947 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 917 GATCACAAAATGTTCAAATCAATGATATAACTTGCGGTCCCGGTCACGGTATCAGTATTG 976 Query 948 GGAGCCTTGGAGATGACAATTCAAAGGCTTTTGTCTCAGGCGTGACTGTGGATGGTGCAA 1007 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 977 GGAGCCTTGGAGATGACAATTCAAAGGCTTTTGTCTCAGGCGTGACTGTGGATGGTGCTA 1036 Query 1008 AGCTTTCCGGTACAGACAATGGAGTAAGAATCAAAACTTACCAGGGAGGGTCAGGAACTG 1067 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1037 AGCTTTCCGGTACAGACAATGGAGTAAGAATCAAAACTTACCAGGGAGGGTCAGGAACTG 1096 Query 1068 CTAGCAATATTATATTTCAAAACATTCAGATGGAAAATGTGAAGAATCCGATCATAATTG 1127 |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| | Sbjct 1097 CTAGCAATATTATATTTCAAAACATTCAGATGGATAATGTTAAGAATCCGATCATAATCG 1156 Query 1128 ACCAAGACTACTGCGACAAGAGCAAATGCACTTCACAGCAATCCGCGGTCCAAGTGAAGA 1187 |||||||||||||||||||||||||||||||| || || ||||||||||||||||||||| Sbjct 1157 ACCAAGACTACTGCGACAAGAGCAAATGCACTACAGAGAAATCCGCGGTCCAAGTGAAGA 1216 Query 1188 ACGTGGTGTACCGAAACATTAGCGGCACTAGCGCGTCGGACAAGGCAATAACGTTTAACT 1247 ||||||||||||| |||| || ||||||||||| ||||| || |||||||||||||||| Sbjct 1217 ACGTGGTGTACCGGGACATAAGTGGCACTAGCGCATCGGAAAACGCAATAACGTTTAACT 1276 Query 1248 GCAGCAAGAACTATCCATGCCTAGGAATTGTGCTTGACAAAGTGAACATTAAAGGAGGGA 1307 ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| | Sbjct 1277 GCAGCAAGAACTATCCATGCCAAGGAATTGTGCTTGACAGAGTGAACATTAAAGGAGGAA 1336 Query 1308 AAGCAACTTGCACCAATGCCAATGTGGTTGATAAAGGAGCTGTAT-TCCCTCAATGCAAC 1366 ||||||||||||||||||| ||||||||||||||||||||||| | | ||||| |||||| Sbjct 1337 AAGCAACTTGCACCAATGCTAATGTGGTTGATAAAGGAGCTGT-TCTGCCTCAGTGCAAC 1395 Query 1367 TCCACTTAATTAATTAGATAT-TTAGATCTATCAAACACatacatagatatatatatata 1425 |||||||| ||| |||||| |||||||||||||||||||||||| | ||||||| ||| Sbjct 1396 TCCACTTAGTTACTTAGATCGCTTAGATCTATCAAACACATACATATAGATATATAAATA 1455 Query 1426 tagtatag 1433 || |||| Sbjct 1456 CAG-ATAG 1462 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 73644199515 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5