BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483267
Length=1493
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41850.1 | Symbols: PGAZAT, ADPG2 | polygalacturonase abscis... 2176 0.0
> AT2G41850.1 | Symbols: PGAZAT, ADPG2 | polygalacturonase abscission
zone A. thaliana | chr2:17461655-17464161 REVERSE LENGTH=1667
Length=1667
Score = 2176 bits (1178), Expect = 0.0
Identities = 1319/1388 (95%), Gaps = 6/1388 (0%)
Strand=Plus/Plus
Query 49 aaaaaaaaaaCACATATCCTTACCAATGGCCCGTTGTTCCAAACTTGTTACCGTTTTCCT 108
||| ||||||||||| ||||| ||||||||||||||| |||| |||||||||||||||||
Sbjct 78 AAAGAAAAAACACATTTCCTTGCCAATGGCCCGTTGTACCAACCTTGTTACCGTTTTCCT 137
Query 109 ATTATGGGCTCTTTTGATGTTCTCATGGTGCAAAGGTTCAAGAATCAGCCCTAATGGATA 168
|||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||
Sbjct 138 ATTATGGGCTCTTTTGATGTTCTCATGGTGTAAAGCTTCAAGAATCAGCCCTAATGTATA 197
Query 169 TGATCATTCTTATAAAAGGTTCAAATCCGATAGCTTAATCAATCGAAAACAGGACATCAC 228
||| |||||||||||||||||||||||||||||||||||||| |||| | ||||||||||
Sbjct 198 TGACCATTCTTATAAAAGGTTCAAATCCGATAGCTTAATCAAGCGAAGAGAGGACATCAC 257
Query 229 GGGCTTGAGAAGTTTTGTAAGAGCCTCTTTGCGGACTCCAACCACAGTTAGTGTTTCTGA 288
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 258 GGGATTGAGAAGTTTTGTAAGAGCCTCTTTGCGGACTCCAACCACCGTTAGTGTTTCTGA 317
Query 289 TTATGGAGCTAAAGGAGATGGAAAAACCGATGACACGCAGGCGTTCGTGAATGCGTGGAA 348
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 318 TTTTGGAGCTAAAGGAGATGGAAAAACCGATGACACGCAGGCGTTCGTGAATGCGTGGAA 377
Query 349 GAAAGCATGTTCTTCAAATGGAGCTGTTAATCTCCTAGTTCCTAAAGGGAATACTTATTT 408
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 378 GAAAGCATGTTCTTCAAATGGAGCTGTTAATCTCCTAGTTCCTAAAGGGAATACTTATCT 437
Query 409 CCTTAAGTCTATTCAATTAACTGGTCCATGCAGTTCTAT-CATTACCGTTCAGATGTTCG 467
|||||||||||||||||||||||||||||||| |||||| | | ||||||||||| ||||
Sbjct 438 CCTTAAGTCTATTCAATTAACTGGTCCATGCAATTCTATTC-TCACCGTTCAGATATTCG 496
Query 468 GAACGTTATCCGCATCTCAAAAGCGAACGGATTACAAAGATATCAGCAAATGGATAATGT 527
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 497 GAACGTTATCCGCATCTCAAAAACGATCGGATTACAAAGATATCAGCAAATGGATAATGT 556
Query 528 TTGACGGCGTTAACAGTCTATCAGTCGATGGCGGCGGCACTGGGGTTGTGGACGGAAACG 587
|||| |||||||||| ||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 557 TTGATGGCGTTAACAATCTATCAGTCGATGGAGGCGACACTGGGGTTGTGGACGGAAACG 616
Query 588 GCGAAACGTGGTGGCAAAACTCATGCAAACGGAACAAAGCTAAGCCATGCACAAAAGCCC 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 617 GCGAAACGTGGTGGCAAAACTCATGCAAACGGAACAAAGCTAAGCCATGCACAAAAGCCC 676
Query 648 CAACGGCTCTTACTTTCTACAACTCGAAAAGTCTGATAGTGAAAAATCTGAGGGTGAGAA 707
|||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 677 CAACGGCTCTTACTTTTTACAACTCGAAAAGTCTGATAGTGAAGAATCTGAAGGTGAGAA 736
Query 708 ATGCACAGCAGATTCAGATTTCAATTGAAAAAAGCTCCAACGTTCAGGTCTCTAATGTCG 767
||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 737 ATGCACAGCAGATCCAGATTTCGATTGAAAAATGCTCCAACGTTCAGGTCTCTAATGTCG 796
Query 768 TGGTAACTGCGCCTGCGGATAGTCCTAACACCGATGGTATTCATATCACTAACACCCAAA 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 797 TGGTAACTGCGCCTGCGGATAGTCCTAACACCGATGGTATTCATATCACTAACACCCAAA 856
Query 828 ACATTCGAGTCTCCGACTCCATCATAGGAACAGGTGATGATTGCATATCTATTGAAAGTG 887
|||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||
Sbjct 857 ACATTCGAGTCTCCGAATCCATCATTGGAACAGGCGATGATTGCATATCTATTGAAAGTG 916
Query 888 GATCACAAAATGTTCAAATCAATGATATAACTTGCGGTCCTGGTCACGGTATCAGTATTG 947
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 917 GATCACAAAATGTTCAAATCAATGATATAACTTGCGGTCCCGGTCACGGTATCAGTATTG 976
Query 948 GGAGCCTTGGAGATGACAATTCAAAGGCTTTTGTCTCAGGCGTGACTGTGGATGGTGCAA 1007
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 977 GGAGCCTTGGAGATGACAATTCAAAGGCTTTTGTCTCAGGCGTGACTGTGGATGGTGCTA 1036
Query 1008 AGCTTTCCGGTACAGACAATGGAGTAAGAATCAAAACTTACCAGGGAGGGTCAGGAACTG 1067
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 AGCTTTCCGGTACAGACAATGGAGTAAGAATCAAAACTTACCAGGGAGGGTCAGGAACTG 1096
Query 1068 CTAGCAATATTATATTTCAAAACATTCAGATGGAAAATGTGAAGAATCCGATCATAATTG 1127
|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
Sbjct 1097 CTAGCAATATTATATTTCAAAACATTCAGATGGATAATGTTAAGAATCCGATCATAATCG 1156
Query 1128 ACCAAGACTACTGCGACAAGAGCAAATGCACTTCACAGCAATCCGCGGTCCAAGTGAAGA 1187
|||||||||||||||||||||||||||||||| || || |||||||||||||||||||||
Sbjct 1157 ACCAAGACTACTGCGACAAGAGCAAATGCACTACAGAGAAATCCGCGGTCCAAGTGAAGA 1216
Query 1188 ACGTGGTGTACCGAAACATTAGCGGCACTAGCGCGTCGGACAAGGCAATAACGTTTAACT 1247
||||||||||||| |||| || ||||||||||| ||||| || ||||||||||||||||
Sbjct 1217 ACGTGGTGTACCGGGACATAAGTGGCACTAGCGCATCGGAAAACGCAATAACGTTTAACT 1276
Query 1248 GCAGCAAGAACTATCCATGCCTAGGAATTGTGCTTGACAAAGTGAACATTAAAGGAGGGA 1307
||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
Sbjct 1277 GCAGCAAGAACTATCCATGCCAAGGAATTGTGCTTGACAGAGTGAACATTAAAGGAGGAA 1336
Query 1308 AAGCAACTTGCACCAATGCCAATGTGGTTGATAAAGGAGCTGTAT-TCCCTCAATGCAAC 1366
||||||||||||||||||| ||||||||||||||||||||||| | | ||||| ||||||
Sbjct 1337 AAGCAACTTGCACCAATGCTAATGTGGTTGATAAAGGAGCTGT-TCTGCCTCAGTGCAAC 1395
Query 1367 TCCACTTAATTAATTAGATAT-TTAGATCTATCAAACACatacatagatatatatatata 1425
|||||||| ||| |||||| |||||||||||||||||||||||| | ||||||| |||
Sbjct 1396 TCCACTTAGTTACTTAGATCGCTTAGATCTATCAAACACATACATATAGATATATAAATA 1455
Query 1426 tagtatag 1433
|| ||||
Sbjct 1456 CAG-ATAG 1462
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73644199515
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5