BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483274
Length=427
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41905.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 614 3e-175
AT3G57690.1 | Symbols: AGP23, ATAGP23 | arabinogalactan protein... 224 5e-58
> AT2G41905.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: arabinogalactan protein 23 (TAIR:AT3G57690.1); Has
35333 Blast hits to 34131 proteins in 2444 species: Archae -
798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants -
531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
| chr2:17495680-17496142 FORWARD LENGTH=463
Length=463
Score = 614 bits (332), Expect = 3e-175
Identities = 400/431 (93%), Gaps = 12/431 (3%)
Strand=Plus/Plus
Query 1 aaaaacaaaaaaagtaaacaaaactaccaaaaaaaaaaacagaaaaaaaaCCTTTCAGGT 60
||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 17 AAAAATAATAAAAGTAAACAAAACTACCAAAAAAAAAAACAG-AAAAAAACCTTTCAGGT 75
Query 61 CTCAACTAGCAATGGAGATGAAGAAGATTGCCTGCGGAGTCGTTTTCGCTGCTGCTTCCA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 76 CTCAACTAGCAATGGAGATGAAGAAGATTGCCTGCGGAGTCGTTTTCGCTGCTGCTTCCA 135
Query 121 TGACCGCCGTCATGGCTGCAGAGGTCGGAGCTCCGGCACCAGGACCCGCCGCCAGCGGAG 180
||||||||||||||||||||||||||||||| || ||||||||||||||||| || ||||
Sbjct 136 TGACCGCCGTCATGGCTGCAGAGGTCGGAGCACCTGCACCAGGACCCGCCGCAAGTGGAG 195
Query 181 CCTCTATAGCCGTACCGGCTCTTGGCTCTTTGGTTGGAGCTTCCCTTGTGTCTCTCTTCG 240
|||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 196 CCTCCGTAGCTGTTCCGGCTCTTGGCTCTTTGGTTGGAGCTTCCCTTGTGTCTCTCTTCG 255
Query 241 CCTACTACTTGAACTAAGCTTAT--ATTTAAAG-AAAAAA-GAAGAAATATTGATGTCTC 296
||||||||||||||||||||| | |||||||| |||||| |||||||||| ||||||||
Sbjct 256 CCTACTACTTGAACTAAGCTTTTCTATTTAAAGCAAAAAAAGAAGAAATATCGATGTCTC 315
Query 297 TGTCAATTTTTACAATGTCCAATTTTGTGTGTGTTGTTTAGACAGGCAAAGTGAATAAAA 356
||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 316 TGTCAATTTCTATGATGTCCAATTTTGTGTGTGTTGTTTAGACAGGCAAAGTGAATAAAA 375
Query 357 CGAAAGAGAAAACAATTTGATAATGGTCAGACATGTTTTTATGTAAAATGCTGATTAATA 416
||||| | | || |||||| | |||||||||||||||||||||| ||||||||||||
Sbjct 376 CGAAA-A-ATAA---TTTGATTACGGTCAGACATGTTTTTATGTAA--TGCTGATTAATA 428
Query 417 AATATATGTAT 427
||||||| |||
Sbjct 429 AATATATATAT 439
> AT3G57690.1 | Symbols: AGP23, ATAGP23 | arabinogalactan protein
23 | chr3:21384204-21384572 FORWARD LENGTH=369
Length=369
Score = 224 bits (121), Expect = 5e-58
Identities = 217/259 (84%), Gaps = 23/259 (9%)
Strand=Plus/Plus
Query 18 acaaaactaccaaaaaaaaaaacagaaaa-aaaa-CCTTTCAGGTCTCAACTAGCAATGG 75
|||||| || ||| ||||| | |||||| |||| ||||||||||||||| | ||||||
Sbjct 16 ACAAAA--ACTAAATAAAAAGA-AGAAAAGAAAAGCCTTTCAGGTCTCAA--A-CAATGG 69
Query 76 AGATGAAGAAGATTGCCTGCGGAGTCG-TTTTCGCTGCTGCTTCCATGACCGCCGTCATG 134
|||||||||||||||| ||||| || | ||||||||||||| ||||||||||||||||||
Sbjct 70 AGATGAAGAAGATTGCTTGCGGTGT-GCTTTTCGCTGCTGCCTCCATGACCGCCGTCATG 128
Query 135 GCTGC--A-GAGGTCGGAGCTCCGGCACCAGGACCCGCCGCCAGCGGAGCCTC-TATAGC 190
||||| | || ||||||||||||||||||||||| || || || ||||| | |
Sbjct 129 GCTGCTGAGGAAGTCGGAGCTCCGGCACCAGGACCTGCATCC-GC--CGCCTCGGCT-G- 183
Query 191 CG-TACCGGCTCTTGGCTCTTTGGTTGGAGCTTCCCTTGTGTCTCTCTTC-GCCTACTAC 248
|| | || |||||||||||||||||||||||||||||||| || |||||| || ||||||
Sbjct 184 CGTTGCCAGCTCTTGGCTCTTTGGTTGGAGCTTCCCTTGTCTCCCTCTTCAGC-TACTAC 242
Query 249 TTGAACTAAGCTTATATTT 267
||| |||||||| || |||
Sbjct 243 TTGCACTAAGCT-ATCTTT 260
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20257902847
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5