BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483279
Length=1011
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41930.1 | Symbols: | Protein kinase superfamily protein | ... 1288 0.0
> AT2G41930.1 | Symbols: | Protein kinase superfamily protein
| chr2:17501629-17502684 FORWARD LENGTH=1056
Length=1056
Score = 1288 bits (697), Expect = 0.0
Identities = 794/841 (94%), Gaps = 6/841 (1%)
Strand=Plus/Plus
Query 1 ATGCCGCCGGAGATGGAGTTGGTGAAGGTTTTGGGAAAGGGTACTTACGGCTCCGTCGAG 60
||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCGCCGGAGATGGAATTCGTGAAGGTTTTGGGAAAGGGTACTTACGGCTCCGTCGAG 60
Query 61 CTCTTCAGCCACAAACAAAACGACGGATCATTGCTCTACAACGCAGTGAAGATCATGGAC 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 CTCTTCAGCCACAAACAAAACGACGGATCGTTGCTCTACAACGCAGTGAAGATCATGGAC 120
Query 121 TCTGAGAACTACGGTTCTATAGACCAAGAGTTTCGAATTCTGTCGGAACTCAGAGGATGT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCTGAGAACTACGGTTCTATAGACCAAGAGTTTCGAATTCTGTCGGAACTCAGAGGATGT 180
Query 181 CCTTGTATCGTGCAATTGTGTGGGAACTCTCTTGTTCAAGGAACCGATTGCAATGGAAGA 240
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 181 CCTTGTATCGTGCAATTGTGTGGGAACTCTCTTGTTCAAGGAATTGATTGCAATGGAAAA 240
Query 241 AAAGTTTACAAGATGTCAATGGAGTATGCAGCTGCTGGTACTTTAACTAATTTCATCCAA 300
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 241 AAAGTTTACATGATGTCAATGGAGTATGCAGCTGCTGGTACTCTAACTAATTTCATCAAA 300
Query 301 AGAAACAGAACAAAGTTGTCAGATTCGGTTATTAAAGACTTTACTCGTATGATTCTAAAA 360
|||||| |||| |||||||| ||||| |||||||||||||| ||||||||||||||| ||
Sbjct 301 AGAAACCGAACGAAGTTGTCGGATTCTGTTATTAAAGACTTCACTCGTATGATTCTACAA 360
Query 361 GGATTGGTCTCGATTCATAGTCATGGTTATGTTCATTGTGATCTTAAACCGGACAATATC 420
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GGATTGGTCTCGATTCATAATCATGGTTATGTTCATTGTGATCTTAAACCGGACAATATC 420
Query 421 CTTCTTTTTCCTATTTACGATAAAGAAACGTGGAATTGTTCTTACGAATTGAAGATTTCG 480
|||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 421 CTTCTTTTTCCTCTTTACGATAAAGATACGTGGAATTGTTCTTACGAGTTGAAGATTTCG 480
Query 481 GATTTCGGAATATCGACAAGGGCCGGAGACAAATCTGATTGTTGGCGAATCGATGAACCG 540
||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||
Sbjct 481 GATTTCGGAATATCGACAAGGGCCGGAGACAAATCTGGTTGTTGGAGAGTCGATGAACCG 540
Query 541 TGGGTCGGAACGTCTATCTACATGTCTCCGGAGTCAGTCCGCGACGGCACCACCGTTGAG 600
||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 541 TGGGTGGGAACGTCTATCTACATGTCTCCTGAGTCAGTCAGCGACGGCACCACCGTTGAG 600
Query 601 AAAACCCTAGATTTGTGGTCA-TTGGGTTGCATAGTGTTGGAGATGTATACAAGTAAGCG 659
||||||||||||||||||||| |||| |||||| |||||| |||||||||| |||||||
Sbjct 601 AAAACCCTAGATTTGTGGTCACTTGG-TTGCATTGTGTTGAAGATGTATACCGGTAAGCG 659
Query 660 GCCATGGTTAGGGTTTGATAAAGATGTTCAGTCTCTTCTTTTGGAT-AATAAGGCACCAG 718
|||||||||||||||||| ||||||||| |||||||||||||| || || ||||||||||
Sbjct 660 GCCATGGTTAGGGTTTGAGAAAGATGTTAAGTCTCTTCTTTTGAATCAA-AAGGCACCAG 718
Query 719 AAATTCCAGAGACTGTGCCGTGTGATGCAAGACTGTTTTTGGAGAAGTGTTTCGCAAGAA 778
| |||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 719 AGATTCCAGAGACTCTGCCGTGTGATGCAAGGCTGTTTTTGGAGAAGTGTTTCTCAAGAA 778
Query 779 AACCTGAGGAGAGAGGAACAGCTTCCGAGTTGTTGTTGCATCCGTTTTTCGACGGG-GAT 837
||||||||||||||||| ||||||| |||||| |||||||||||||||| ||| || |||
Sbjct 779 AACCTGAGGAGAGAGGATCAGCTTCGGAGTTGCTGTTGCATCCGTTTTT-GACCGGAGAT 837
Query 838 G 838
|
Sbjct 838 G 838
Score = 276 bits (149), Expect = 3e-73
Identities = 172/183 (94%), Gaps = 1/183 (1%)
Strand=Plus/Plus
Query 829 GACGGGGATGGTG-TGAGGCTCAGAAACCCTCCCCCGATATTGAAAGATATTCCAACGAA 887
||||||||||||| ||||||||||||| ||||| ||||||| ||||||||||||||||||
Sbjct 873 GACGGGGATGGTGTTGAGGCTCAGAAAACCTCCGCCGATATCGAAAGATATTCCAACGAA 932
Query 888 GCCACTGAAATTGAAGGTTATTTCACAAAAGCCCCAACAGTTTAAGAAAGTCTCGAACAA 947
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 933 GCCACGGAAATTGAAGGTTATTTCACAAAAGCCCCAACAGTTAAAGAAAGTCTCGAATAA 992
Query 948 ACCCCTAAAAGTGAAAATTGTTCCTCCGAGACCCCCAAGATCCGATTTTGTTCCCGTTCA 1007
||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 993 ACCCCTAAAGGTGAAGATTGTTCCTCCGAGACCCCCAAGATCCGATTTTGTCCCCGTTCT 1052
Query 1008 ATA 1010
|||
Sbjct 1053 ATA 1055
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49530868942
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5