BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483285
Length=1518
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41970.1 | Symbols: | Protein kinase superfamily protein | ... 2464 0.0
> AT2G41970.1 | Symbols: | Protein kinase superfamily protein
| chr2:17520379-17522756 REVERSE LENGTH=1525
Length=1525
Score = 2464 bits (1334), Expect = 0.0
Identities = 1468/1530 (96%), Gaps = 20/1530 (1%)
Strand=Plus/Plus
Query 1 AAACAGAGAGACTTACAATAATTCTAAGAAAATTAAttt-cttttttcctcaaactttc- 58
|||||||||||||| |||||||||||||||||||||||| ||||||| |||||||| ||
Sbjct 1 AAACAGAGAGACTTTCAATAATTCTAAGAAAATTAATTTCCTTTTTT-CTCAAACTATCT 59
Query 59 ttttcaagatttctaaattttttcaggctcg-ttga---tatttttcCCGACA-TTATTC 113
||||| ||||||||||| |||||||||||| |||| | |||||||||||| ||||||
Sbjct 60 TTTTCCAGATTTCTAAACATTTTCAGGCTCGTTTGATCTTTTTTTTCCCGACATTTATTC 119
Query 114 AAAGTTTTCAGAAACAGATCCTTCCTTTGTGGTTTTCTGAAGTATTTTCACTCTCATCAT 173
||| ||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||
Sbjct 120 AAACTTTTCAGAAACAGATCCTTCCTTTGTGATTTTCTGAAGTA-TTT-ACTCTCATCAT 177
Query 174 CATTTTCTTGGGTTGATTCTATGGCATAATCAAGGAAAAAACAGAGA-TCGATAGAAACA 232
||||||||||||||||||| |||||| |||||||| ||||||||||| | | | ||||||
Sbjct 178 CATTTTCTTGGGTTGATTCAATGGCAGAATCAAGGTAAAAACAGAGATTGGCT-GAAACA 236
Query 233 GAATC-GAAAAGACATAAATAAGACAAAACCCGTGTTGGCAAAAGATCTGAAGATATGTT 291
||||| ||| | | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 GAATCGGAACATA-A-GAATAAGACAAAACCCGTGTTGGCAAAAGATCTGAAGATATGTT 294
Query 292 CTGTTGCGGTGGTGCGGATGAGGAACCCGCCGGTCCGCCCGCAAACCAGTATGCAGCCCC 351
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 TTGTTGCGGTGGTGCGGATGAGGAACCCGCCGGTCCGCCCGCAAACCAGTATGCAGCCCC 354
Query 352 TCCTAACAAGGCCGGAAATCCCAATTTTGGCGGTGGGAATAGAGGGGAACCGAGGAATCC 411
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 TCCTAACAAAGCCGGAAATCCCAATTTTGGCGGTGGGAATAGAGGGGAACCGAGGAATCC 414
Query 412 TAACGCACCGAGATCAGGAGCTCCTGCAAAGGTTTTGCCCATAGAGATCCCTTCTGTTGC 471
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 GAATGCACCGAGATCAGGAGCTCCTGCAAAGGTTTTGCCCATAGAGATCCCTTCTGTTGC 474
Query 472 ATTGGATGAGTTGAACAGAATGGCCGGTAACTTCGGAAACAAGGCACTGATCGGTGAAGG 531
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 475 ATTGGATGAGTTGAACAGAATGGCGGGTAACTTCGGAAACAAGGCACTGATCGGTGAAGG 534
Query 532 TTCTTATGGACGTGTCTTCTGCGGCAAGTTTAAGGGAGAAGCTGTTGCTATCAAGAAACT 591
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 535 TTCTTATGGACGTGTCTTCTGCGGCAAGTTTAAAGGAGAAGCTGTTGCTATCAAGAAACT 594
Query 592 TGATGCTAGCTCTTCTGAAGAACCTGACTCAGATTTCACCTCACAGTTATCGGTGGTATC 651
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 TGATGCTAGTTCTTCTGAAGAACCTGACTCAGATTTCACCTCACAGTTATCGGTGGTATC 654
Query 652 GCGGCTCAAACACGACCATTTTGTGGAGTTGCTGGGGTACTGCTTGGAGGCAAATAACCG 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 655 GCGGCTCAAACACGACCATTTTGTGGAGTTGCTGGGGTACTGCTTGGAGGCAAATAATCG 714
Query 712 CATTCTCATCTACCAGTTTGCAAAC-AAAGGTTCTTTACACGATGTATTACACGGGAGAA 770
||||||||| ||||||||||| ||| |||||||||||||| |||||||||||||||||||
Sbjct 715 CATTCTCATTTACCAGTTTGC-AACTAAAGGTTCTTTACATGATGTATTACACGGGAGAA 773
Query 771 AGGGAGTGCAAGGGGCTGAGCCAGGACCTGTGCTGAACTGGAACCAAAGGGTGAAGATTG 830
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 774 AGGGAGTGCAAGGGGCTGAGCCAGGACCGGTGCTGAACTGGAACCAAAGGGTAAAGATTG 833
Query 831 CATATGGAGCAGCCAAAGGGCTTGAGTTCCTTCACGAGAAGGTCCAGCCACCAATAGTCC 890
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 CATATGGAGCAGCCAAAGGGCTTGAGTTCCTTCACGAGAAGGTCCAGCCACCAATAGTCC 893
Query 891 ACAGGGACGTGAGGTCGAGCAATGTCTTGTTGTTTGATGACTTCGTGGCCAAGATGGCTG 950
| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 894 ATAGGGACGTGAGGTCGAGCAATGTCTTGTTGTTTGATGACTTTGTGGCCAAAATGGCTG 953
Query 951 ATTTCAACTTGACCAATGCTTCCTCCGATACCGCGGCTAGGCTTCACTCTACTCGTGTTT 1010
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 954 ATTTCAACTTGACCAATGCTTCCTCCGATACCGCGGCTAGGCTTCATTCTACTCGTGTTT 1013
Query 1011 TGGGAACATTCGGCTACCACGCTCCAGAGTATGCAATGACAGGACAGATAACGCAGAAGA 1070
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 TGGGAACATTCGGCTACCACGCTCCAGAGTATGCAATGACAGGACAGATAACGCAGAAGA 1073
Query 1071 GTGATGTGTATAGTTTCGGTGTTGTGCTATTGGAGCTCTTGACAGGAAGAAAACCCGTAG 1130
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 GTGATGTGTATAGTTTTGGTGTTGTGCTATTGGAGCTCTTGACAGGAAGAAAACCCGTAG 1133
Query 1131 ATCATACCATGCCTAAAGGCCAACAAAGTCTTGTTACTTGGGCAACACCGAGACTAAGTG 1190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 ATCATACCATGCCTAAAGGCCAACAAAGTCTTGTTACTTGGGCAACACCGAGACTAAGTG 1193
Query 1191 AAGACAAAGTGAAACAATGCATAGATCCTAAGCTTAACAACGACTTTCCTCCCAAAGCAG 1250
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1194 AAGACAAAGTGAAACAATGCATAGATCCTAAGCTTAACAATGACTTTCCTCCCAAAGCAG 1253
Query 1251 TCGCCAAGTTGGCAGCCGTGGCGGCCTTGTGTGTTCAGTATGAGGCAGATTTCCGACCAA 1310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 TCGCCAAGTTGGCAGCCGTGGCGGCCTTGTGTGTTCAGTATGAGGCAGATTTCCGACCAA 1313
Query 1311 ACATGACCATCGTTGTCAAGGCACTTCAGCCTCTTCTTAACTCTAAACCGACCGGTCCTG 1370
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 1314 ACATGACCATCGTTGTCAAGGCACTTCAGCCTCTTCTAAACTCTAAACCGGCCGGTCCTG 1373
Query 1371 AGTCTACGTCCTAAA-TAAACAATTTACCATTTCTCTTGTTTTTGTTCCTTGTTGTTGTT 1429
||||||||||||||| |||||||| ||||||||||||||||||||||| | |||||||||
Sbjct 1374 AGTCTACGTCCTAAACTAAACAATATACCATTTCTCTTGTTTTTGTTCAT-GTTGTTGTT 1432
Query 1430 ATTATGGCTATTTT-TCTCTCTTTTCTGTTCCAAGAACTATGATTATTGGTTATAAGATG 1488
|||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||
Sbjct 1433 ATTATGGCTATTTTCTCCCTCTTTTCTGTTCCAAGAACTATGATTATTGGTTGTAAGATG 1492
Query 1489 TTGTTATTTAATCGAATGTAATTTATATTT 1518
||||||||||| ||||||||| ||||||||
Sbjct 1493 TTGTTATTTAAGCGAATGTAACTTATATTT 1522
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74899213140
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5