BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483287
Length=1303
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42005.1 | Symbols: | Transmembrane amino acid transporter ... 2085 0.0
AT4G38250.1 | Symbols: | Transmembrane amino acid transporter ... 828 0.0
> AT2G42005.1 | Symbols: | Transmembrane amino acid transporter
family protein | chr2:17531192-17532582 REVERSE LENGTH=1391
Length=1391
Score = 2085 bits (1129), Expect = 0.0
Identities = 1246/1304 (96%), Gaps = 2/1304 (0%)
Strand=Plus/Plus
Query 1 CTCTAATCAGGTATAGAGATGGGTTTGGAGGAACAAGGAAGGGCGAGAGAAGACACACCG 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTCTAATCAGGTATAGAGATGGGTTTGGAGGAACAAGGAAGGGCGAGAGAAGACACACCT 60
Query 61 CTTCTTGGTAAAGGACGACCATTGTCGAGCAAGTTCAAGACTTTCGCCAATGTCTTCATT 120
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 CTTCTTGGTAAAGGAAGACCATTGTCGAGCAAGTTCAAGACTTTCGCTAATGTCTTCATT 120
Query 121 GCTATCGTTGGTGCTGGGGTTCTTGGTCTACCTTACGCCTTCAAACGAACCGGATGGCTC 180
||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||
Sbjct 121 GCTATCGTTGGTGCTGGTGTCCTTGGTCTTCCTTACGCCTTCAAACGAACCGGATGGCTC 180
Query 181 ATGGGTTTGCTTACGCTCTTTTCCGTCGCCGCTTTGATCAACCATTGCATGATGCTTCTT 240
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 181 ATGGGTTTGCTTACGCTCTTTTCCGTCGCTGCTTTGATCAACCATTGCATGATGCTTCTT 240
Query 241 GTTCATATCCGTCGCAAGCTTGGTGTCTCTAATATTGGCTCTTTTGGGGATCTTGGGTTT 300
||||||||||||||||||||||||||||| ||||| || ||||||||||| ||| |||||
Sbjct 241 GTTCATATCCGTCGCAAGCTTGGTGTCTCCAATATCGGATCTTTTGGGGACCTT-GGTTT 299
Query 301 -GCTGTTTGCGGCCACCTCGGGAGGTTCGTCGTCGACATTCTTATTATTCTGTCTCAGGC 359
|||| |||||| | ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 300 CGCTGCCTGCGGCAATCTCGGGAGGTTCGTCGTCGACATTCTTATTATTTTGTCTCAGGC 359
Query 360 TGGGTTTTGTGTTGGATACCTTATCTTCATCGGTACTACTTTAGCTAATCTCTTTAACCC 419
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||
Sbjct 360 TGGGTTTTGTGTTGGATACCTTATCTTCATCGGTAATACTTTAGCTAATCTCTCTAAGCC 419
Query 420 AACCACGACTACGACTTTGATGAGTCTGAGGCATTTAATGGGTGTGTCTCCTAAGAGTCT 479
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AACCAAGAGTACGACTTTGATGAGTCTGAGGCATTTAATGGGTGTGTCTCCTAAGAGTCT 479
Query 480 CTACATATGGGGATGCTTTCCGTTTCAGCTGGGTTTGAATTCTATTAAGACTCTAACTCA 539
||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||
Sbjct 480 CTACATATGGGGATGTTTTCCGTTTCAGCTGGGTTTGAATTCTATTAAGACACTCACTCA 539
Query 540 CTTGGCCCCTTTGAGCATATTCGCTGATGTGGTTGATTTGGGTGCAATGGCGGTGGTGAT 599
|||||| ||| |||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 540 CTTGGCTCCTCTGAGCATATTTGCTGATGTGGTCGATTTGGGTGCAATGGCGGTGGTGAT 599
Query 600 TGTGGAGGATATTAAGATTACAGTGGTGCAAAGGCCTCAAGTTGTTGCCTTTGGTGGTAT 659
||||||||| || |||||||| ||||||||||||||||||||||| ||||||||||| ||
Sbjct 600 TGTGGAGGACATCAAGATTACGGTGGTGCAAAGGCCTCAAGTTGTCGCCTTTGGTGGCAT 659
Query 660 GTCTGTGTTCTTCTATGGGATGGGAGTGGCCGTTTACGCCTTTGAAGGGGTTGGAATGGT 719
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 660 GTCTGTGTTCTTCTATGGTATGGGAGTGGCTGTTTACGCCTTTGAAGGGGTTGGAATGGT 719
Query 720 TTTGCCTCTTGAATCCGAGACCAAGGACAAGGACAAGTTTGGCAAAGTGTTGGCACTCAG 779
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 720 TTTGCCTCTTGAATCCGAGACTAAGGATAAGGACAAGTTTGGCAAAGTGTTGGCACTCAG 779
Query 780 CATGCTATTCATAGCCGTCATGTATGGATCTTTTGGTGTGTTAGGCTACATGGCTTTTGG 839
|||||||||||| || || |||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CATGCTATTCATTGCAGTGATGTATGGATCTTTTGGTGTGTTAGGCTACATGGCTTTTGG 839
Query 840 GGATGAAACGATGGATATAATCACAGCTAACTTGGGGGCAGGAGTGGTGAGCAGTCTTGT 899
|||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 840 GGATGATACAATGGATATAATCACAGCTAACTTAGGGGCAGGAGTGGTGAGCAGTCTTGT 899
Query 900 GCAGCTGGGGCTCTGCATCAACCTTTTCTTCACCTTCCCCTTGATGATGAACCCTGTGTT 959
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 900 GCAGCTGGGGCTCTGTATCAACCTTTTCTTCACCTTTCCCTTGATGATGAACCCTGTGTT 959
Query 960 TGAGATCGTGGAGAGACGTTTCTGGAGTGGAATGTACTGCGTCTGGCTCAGATGGCTGCT 1019
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 TGAGATTGTGGAGAGACGTTTCTGGAGTGGAATGTACTGCGTCTGGCTCAGATGGCTGCT 1019
Query 1020 TGTCTTGGCAGTGACGTTGGTGGCTCTCTTGGTGCCAAACTTTGCAGATTTTTTGTCATT 1079
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1020 CGTCTTGGCAGTGACTTTGGTGGCTCTCTTGGTGCCAAACTTTGCTGATTTTTTGTCATT 1079
Query 1080 GGTTGGCAGCAGCGTCTGCTGTGCGTTGGGCTTTGTGTTGCCTTCTTTGTTTCATCTTAT 1139
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1080 GGTTGGCAGCAGCGTCTGTTGTGCGTTGGGCTTTGTGTTGCCTTCTTTGTTTCATCTGAT 1139
Query 1140 GGTCTTCAAAGACGAAATGGGGTGGAAGCAACGAGCTTTAGACGTGGGGATCCTGCTACT 1199
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 1140 GGTCTTCAAAGACGAAATGGAGTGGAAGCAACGAGCTTTAGACGTGGGGATCCTGCTGCT 1199
Query 1200 GGGTGTCATTCTTGGTGTCTCAGGTACTTGGAGTTCCCTGAGTGAGATCTTCCAGGAGTA 1259
|||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||
Sbjct 1200 GGGTGTCATTCTTGGTGTCTCAGGTACTTGGAGTTCTCTGACTGAGATCTTCCAAGAGTA 1259
Query 1260 GGTAGGTGAAAGAAATTGGACACATTGTTTCTTTTGTTGGAATT 1303
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 GGTAGGTGAAAGAAATTGGACACATTGTTTCTTTTGTTGGAATT 1303
> AT4G38250.1 | Symbols: | Transmembrane amino acid transporter
family protein | chr4:17935402-17937068 FORWARD LENGTH=1667
Length=1667
Score = 828 bits (448), Expect = 0.0
Identities = 1000/1259 (79%), Gaps = 68/1259 (5%)
Strand=Plus/Plus
Query 42 GGCGAGAGAAGACACACCGCTTCTTGGTAAAGGACGACCATTGTCGAGCAAGTTCAAGAC 101
||| ||||| ||| | || ||||| || || |||| || | || ||| |||| |||||
Sbjct 188 GGCCAGAGAGGACTCGCCTCTTCTCGGCAAGGGACCTCCCCTCTCCAGCCAGTTTAAGAC 247
Query 102 TTTCGCCAATGTCTTCATTGCTATCGTTGGTGCTGGGGTTCTTGGTCTACCTTACGCCTT 161
|||||||| |||||||| ||| |||| || ||||| ||||||||||| |||||||||||
Sbjct 248 CTTCGCCAACGTCTTCATCGCTGTCGTCGGCGCTGGTGTTCTTGGTCTTCCTTACGCCTT 307
Query 162 CAAACGAACCGGATGGCTCATGGGTTTGCTTAC-GCTCTTTTCCGTCGCCGCTTTGATCA 220
||| ||||||||||||||||||||| | | | | ||| | |||||| | | ||||| |
Sbjct 308 CAAGCGAACCGGATGGCTCATGGGTGT-CCTCCTCCTCGTCTCCGTCTCTGTTTTGACCC 366
Query 221 ACCATTGCATGATGCTTCTTGTTC-ATATCCGTCGCAA----G---C--T---TGGT-G- 265
| || || ||||||||||||| || ||| ||| ||||| | | | || | |
Sbjct 367 ATCACTGTATGATGCTTCTTG-TCTATACCCGCCGCAAGCTCGACTCTTTCAATGCTGGC 425
Query 266 -TCTCTAATATTGGCTCTTTTGGGGATCTTGGGTTTGCTGTTTGCGGCCACC-TCGGGAG 323
|||| || || ||||||||||| || ||||| || || || ||||| | || | |||||
Sbjct 426 ATCTCCAAGATCGGCTCTTTTGGTGACCTTGGATTCGCCGTCTGCGG-CTCCTTGGGGAG 484
Query 324 GTTCGTCGTCGACATT-CTTATTATTCTGTCTCAGGCTGGGTTTTGTGTTGGATACCTTA 382
| ||||||| ||| || |||| ||||||||||| ||||| |||||||| ||||| ||||
Sbjct 485 GATCGTCGTTGAC-TTATTTATCATTCTGTCTCAAGCTGGTTTTTGTGTCGGATATCTTA 543
Query 383 TCTTCATCGGTACTACTTTAGCTAATC--T-C--T--TTAA-C-CCAACCACGACT-ACG 432
|||||||||| |||||||||||||||| | | | | || | || |||| | || | |
Sbjct 544 TCTTCATCGGCACTACTTTAGCTAATCTATCCGATCCTGAATCGCCCACCA-GTCTGAGG 602
Query 433 -A-C--TTTGATGAGTCTGAGG--C--ATTTAATGGGTGTGTCTCCTAAGAGTCTCTACA 484
| | ||| | || ||| || | | || |||| |||||| |||||||||||||||
Sbjct 603 CATCAGTTT-ACAAGGCTG-GGTTCTGAATTCCTGGGCGTGTCTTCTAAGAGTCTCTACA 660
Query 485 TATGGGGATGCTTTCCGTTTCAGCTGGGTTTGAATTCTATTAAGACTCTAACTCACTTGG 544
|||||||||||||||| |||||||| ||||||||||| || ||||| || ||||||||||
Sbjct 661 TATGGGGATGCTTTCCCTTTCAGCTCGGTTTGAATTCGATCAAGACGCTCACTCACTTGG 720
Query 545 CCCCTTTGAGCATATTCGCTGATGTGGTTGAT-TTGGGTGCAATGGCGGTGGTGATTGTG 603
| ||| | ||||| ||||| ||| | |||||| || || || ||||| ||||| |||||
Sbjct 721 CTCCTCTCAGCATCTTCGCCGATATTGTTGATCTT-GGCGCTATGGCTGTGGTCATTGTT 779
Query 604 GAGGATAT-TAAGATTACAGTGGTGCAAAGGCCTCAAGTTGTTGCCTTTGGTGGTATGTC 662
|||||| | | ||||| | | |||||||||| | || ||||||||||||||||||||
Sbjct 780 GAGGAT-TCCATGATTATACTCAAGCAAAGGCCTGACGTGGTTGCCTTTGGTGGTATGTC 838
Query 663 TGTGTTCTTCTATGGGATGGGAGTGGCCGTTTACGCCTTTGAAGGGGTTGGAATGGTTTT 722
| ||||| ||||| ||||| || || || || |||| ||||| ||||||||||| ||
Sbjct 839 CCTCTTCTTGTATGGTATGGGCGTCGCTGTCTATTCCTTCGAAGGCGTTGGAATGGTCTT 898
Query 723 GCCTCTTGAATCCGAGACCAAGGACAAGGACAAGTTTGGCAAAGTGTTGGCACTCAGCAT 782
|||||||||||| |||| |||||||||||||||||||||||||| ||||| ||| ||||
Sbjct 899 GCCTCTTGAATCGGAGATGAAGGACAAGGACAAGTTTGGCAAAGTCTTGGCTCTCGGCAT 958
Query 783 GCTATTCATAGC-CGTCATGTATGGAT--CTTTTGGTGTGTTAGGCTACATGGCTTTTGG 839
| |||||| | | ||| ||| || | |||||| | ||||| ||| ||||||||||
Sbjct 959 GGGATTCATCTCTC-TCA--TATACATCGCATTTGGTATCTTAGGTTACTTGGCTTTTGG 1015
Query 840 GGATGAAACGATGGATATAATCACAGCTAACTTGGGGGCAGGAGTGGTGAGCAGTCTTGT 899
|| || || ||||| || ||||| |||||||||||||||||| | || |||| | ||||
Sbjct 1016 TGAGGACACCATGGACATTATCACTGCTAACTTGGGGGCAGGACTTGTCAGCACTGTTGT 1075
Query 900 GCAGCTGGGGCTCTGCATCAACCTTTTCTTCACCTTCCCCTTGATGATGAACCCTGTGTT 959
||||| || || ||||||||||| |||||||||||||||||||||||||| || |||||
Sbjct 1076 CCAGCTTGGACTGTGCATCAACCTCTTCTTCACCTTCCCCTTGATGATGAATCCAGTGTT 1135
Query 960 TGAGATCGTGGAGAGACGTTTCTGGA-GTGGAATGTA--CTGCGTCTGGCTCAGATGGCT 1016
|||||| |||||||| ||||||| | | || ||||| ||||| |||||||||||| |
Sbjct 1136 TGAGATAGTGGAGAGGCGTTTCT-CACGCGGGATGTACTCTGCG--TGGCTCAGATGGGT 1192
Query 1017 GCTTGTCTTGGCAGTGACGT-TGGTGGCTCTCTTGGTGCCAAACTTTGCAGATTTTTTGT 1075
|| ||||| |||||||| | |||||||||| || |||||||||||||||||||||||||
Sbjct 1193 ACTCGTCTTAGCAGTGAC-TCTGGTGGCTCTTTTTGTGCCAAACTTTGCAGATTTTTTGT 1251
Query 1076 CATTGGTTGGCAGCAGCGTCT-GCTGTGCGTTGGGCTTTGTGTTGCCTTCTTTGTTTCAT 1134
||||||||||||||||| || |||||| ||| ||||||||||| ||| | |||||||||
Sbjct 1252 CATTGGTTGGCAGCAGCA-CTTGCTGTGTGTTAGGCTTTGTGTTACCTGCATTGTTTCAT 1310
Query 1135 CTTAT-GGTCTTCAAAGACGAAATGGGGTGGAAGCAACG-AGCTTTAGACGTGGGGATCC 1192
|||| ||| ||||| || || ||||||||| |||| | || || |||| | |||
Sbjct 1311 -TTATTGGTGTTCAAGGAAGAGATGGGGTGGCTGCAATGGAG-TTCAGACACAGCGATTG 1368
Query 1193 TGCTACTGGGTGTCATTCTTGGTGTCTCAGGTACTTGGAGTTCCCTGAGTGAGATCTTC 1251
|| |||| ||||| |||||| ||| || || |||||||||||||||||||||||||||
Sbjct 1369 TGGTACTAGGTGTGGTTCTTGCTGTGTCGGGAACTTGGAGTTCCCTGAGTGAGATCTTC 1427
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64106095965
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5