BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483289
Length=1693
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42030.1 | Symbols: | RING/U-box superfamily protein | chr2... 2135 0.0
> AT2G42030.1 | Symbols: | RING/U-box superfamily protein | chr2:17538906-17540966
REVERSE LENGTH=1816
Length=1816
Score = 2135 bits (1156), Expect = 0.0
Identities = 1553/1731 (90%), Gaps = 82/1731 (5%)
Strand=Plus/Plus
Query 1 GATCGGTGAAAAATTCCCTTTGACGAATCGGACTTCCAAAAGCTCGCTGACGAGTTCTCA 60
|||||||||||| |||| || ||||||||||| |||||||||||||||||||||||||||
Sbjct 1 GATCGGTGAAAATTTCCATTCGACGAATCGGAGTTCCAAAAGCTCGCTGACGAGTTCTCA 60
Query 61 ACAGTAACCTCGCCGGAGCTTATCGTCTAAAACCCTCTGTTCCAGACTTCTCTTACGCTT 120
| ||||||||| |||| ||||||||| |||||||| |||||||||||||||||||||||
Sbjct 61 ATAGTAACCTCTCCGGCGCTTATCGTGAAAAACCCTATGTTCCAGACTTCTCTTACGCTT 120
Query 121 TCCTTGCAAATTCTGCCTCAATTTTGGATTAAAGGCAAGAGCTTGAGGGC-TTTTCTCTA 179
|||||||||| ||||||||||||||||||| ||| ||||||||||| ||| ||||||| |
Sbjct 121 TCCTTGCAAAATCTGCCTCAATTTTGGATTGAAGACAAGAGCTTGA-GGCTTTTTCTCCA 179
Query 180 ATCTTAATTGAGAA-TTGGGGGGttttttttCACACGGGGATTTTGCGATTTAGGGTTTC 238
||||||||||| || || |||| |||||| |||||||||||||||| ||||||||||
Sbjct 180 ATCTTAATTGA-AACTT-TGGGG---TTTTTCTCACGGGGATTTTGCGAATTAGGGTTTC 234
Query 239 AGATTGGGGATTTTGTTACATCGAAAGGACTTTTGGAG----A----T----T--G-AA- 282
||||||||||||||||||||||||||||| ||||||| | | | | ||
Sbjct 235 GGATTGGGGATTTTGTTACATCGAAAGGAC-TTTGGAGATTCAGCGTTGGGCTCGGTAAT 293
Query 283 T----AATGGAGAATTCATAAAC-CGGCTCTGGACATTTT-CTGTAGCAGGATAACAAAG 336
| |||| ||||||||||||| | |||||||| ||||| || | ||||||||||||
Sbjct 294 TGAAGAATGCAGAATTCATAAACACCGCTCTGGA-ATTTTACT-TTTTAGGATAACAAAG 351
Query 337 GA--GTCCAttttttttGTTAATTGATGGGTGAGGAAATATCTAGCACAGTGAACCTGGA 394
|| || |||||| | ||||||||||||||||| || ||||||||||| |||||||||||
Sbjct 352 GAGGGT-CATTTTATCTGTTAATTGATGGGTGAAGAGATATCTAGCACTGTGAACCTGGA 410
Query 395 TTTGAATCTGGGTCCTGGCCCTGAGTTAGTTCTCGAGCCAGCAACGAATTATGCTCGGTC 454
||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||||
Sbjct 411 TTTGAATCTGGGTCCTGATCCTGAGTTAGGTCTCGAGCCAGCGACGAATTATGCTCGGTC 470
Query 455 TGATTGGGGTAATGGAC---CTGCTAGGGAATCCGAATCTCTGAGAAGGTTTAGAAGTCG 511
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 471 TGATTGGGGTAATGGACTTGCTGCTAGGGAATCCGAATCTCTGAGAAGGTTTAGAAGTCG 530
Query 512 GCACCAATCACGTTTCAGACGGATTGATATGCTTCCTGTTCTTGCTGAGACACATAGCCC 571
| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 531 GTACCGGTCACGTTTCAGACGGATTGATATGCTTCCGGTTCTTGCTGAGACACATAGCCC 590
Query 572 GGCGATGGAATTGAGTCAATTGTTGATCACTTCTGCAAATGTAGTTGCTTTG-C--C--- 625
|||||||||||||||||| |||||||||||||||| |||||||||||||||| | |
Sbjct 591 GGCGATGGAATTGAGTCAGTTGTTGATCACTTCTGGAAATGTAGTTGCTTTGCCTGCTGG 650
Query 626 -------AGC-T-G---GTGGAGAAAGGGTCAGCGAGAATTCGAAAAAGTGCGAGAATGG 673
||| | | ||||||||||||||| |||| | || |||||||||||||||||
Sbjct 651 TGAGGGAAGCATGGCTAGTGGAGAAAGGGTCATCGAGGACTCCAAAAAGTGCGAGAATGG 710
Query 674 GAGCAAAGTGATGGAAGAAGACAATGTAACAGAGGAGAAAAGAGATGTTGAGAAGAGCGT 733
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 GAGCAAAGTGATGGCAGAAGACAATGTAACAGAGGAGAAAAGAGATGTTGAGAAGAGCGT 770
Query 734 TGGCAGCGATGGGAGCTTTTTTGATTGTTATATATGTTTGGATTTGTCCAAGGATCCAGT 793
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 771 TGGCAGCGATGGGAGCTTTTTCGATTGTTATATATGTTTGGATTTGTCCAAGGATCCAGT 830
Query 794 TGTCACTAATTGTGGCCACCTTTACTGTTGGTCTTGCCTTTACCATTGGCTACAGGTTTC 853
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 831 TGTTACTAATTGTGGCCACCTTTACTGTTGGTCTTGCCTTTACCAGTGGCTACAGGTTTC 890
Query 854 CGAGGCAAAGGAATGCCCGGTTTGCAAAGGGGAGGTATCCGTGAAAACTGTGACTCCAAT 913
|||||||| |||||||||||||| |||||||||||||| |||||||| |||||||||||
Sbjct 891 AGAGGCAAAAGAATGCCCGGTTTGTAAAGGGGAGGTATCTGTGAAAACAGTGACTCCAAT 950
Query 914 CTATGGACGTGGGAAACATAAAAGAGAATCTGAAGAGGTTTCAACCACCAAGATCCCTTC 973
|||||||||||||| ||| |||||||||||||| |||||||||| |||||||||||||||
Sbjct 951 CTATGGACGTGGGATACAGAAAAGAGAATCTGAGGAGGTTTCAAACACCAAGATCCCTTC 1010
Query 974 GAGACCCCAAGCACGGCGCACAGAGAGTTTGAGGACTACACTTCACAGGTCAGGTTATAT 1033
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1011 GAGACCCCAAGCACGACGCACAGAGAGTTTGAGGACTACACTTAACAGGTCAGGTCATAT 1070
Query 1034 ACCAACGGAAATGATT-AGACATTTGCAGGATAGGCTTGAAAGGGAATCTAGTACAGGTG 1092
|||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1071 ACCAACGGAAAT-ATTTAGACATTTGCAGGATAGGCTTGAAAGGGAATCTAGTACAGGAG 1129
Query 1093 AAAGACACGCCAGACCATTTCTTAACCGGTTTATGACTTCGAGGGGAGTTAGAGCGGAGC 1152
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 1130 AAAGACGCGCCAGACCATCTCTTAACCGGTTTATGACTTCGAGGGGAGTTAGAGCAGAGG 1189
Query 1153 AGAACCAGTCTAGTGAAGCATTCGTTGCACCTTCA---GATGAGATTAACGATATTGATC 1209
|||||||||||||||||||| | |||| ||||||| ||||||||||||||||||||||
Sbjct 1190 AGAACCAGTCTAGTGAAGCACTGGTTGAACCTTCATCAGATGAGATTAACGATATTGATC 1249
Query 1210 TGATCTTAAACACTTCCCCTGAACATGAAGAGGAAAACGAAAACCTGAGGTCGTCACGTG 1269
|||||||||| | | |||||||| |||||||||||||||||||||| || ||||||||||
Sbjct 1250 TGATCTTAAATAATGCCCCTGAAAATGAAGAGGAAAACGAAAACCTAAGCTCGTCACGTG 1309
Query 1270 CTTTGTCAATCCGGAGAC-AGTGGGCACAGA-G-ACCCGGGAGGATGTCGTCGTTTACTT 1326
||||| ||| || ||||| | |||||||||| | | |||||| |||||||||||||||
Sbjct 1310 CTTTGGCAACCCAGAGACGA-TGGGCACAGATGTAT--GGGAGGGTGTCGTCGTTTACTT 1366
Query 1327 TGAGCTCTGCTGAAAGATTAGTGGATGCTTATTTGATAACACATGCATTGGGGAGGAACC 1386
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 1367 TGAGCTCTGCTGAAAGATTAGCGGATACTTATTTGATAACACATGCATTGGGGAGGAACC 1426
Query 1387 AAGAGCAAAACAACAATCCTTCC-GTTGGTGTTGAAGACAGGGATTCGTTTTCAAGCATA 1445
|||| ||||||| || |||| || |||||||||||||||||||||||||| |||||||||
Sbjct 1427 AAGAACAAAACAGCAGTCCT-CCTGTTGGTGTTGAAGACAGGGATTCGTTCTCAAGCATA 1485
Query 1446 GTAGGTGTAATAAACTCGGAGAGTCAAGTTGATACTGCGGCTGAGATTGATTCAATGTTG 1505
|||||||| ||||||||||||||||||||||| || |||||||||||| |||||||||||
Sbjct 1486 GTAGGTGTGATAAACTCGGAGAGTCAAGTTGAAACGGCGGCTGAGATTAATTCAATGTTG 1545
Query 1506 ACTGTATCGACATCTTCGTCAGTGAGAAGACATGAGAACAGTTCAAGGGTCTCTGATGTT 1565
||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1546 ACTGTATCGACTTCTTCGTCTGTTAGAAGACATGAGAACAGTTCAAGGGTCTCTGATGTT 1605
Query 1566 GACAGTGCAGATTCTCGTCCACTGAGGAGGAGAAGGAGATTGGCTTAGAAG-GA--GCAG 1622
||||||||||||||||||||||||||||| ||||||||||| ||||||||| || | ||
Sbjct 1606 GACAGTGCAGATTCTCGTCCACTGAGGAGAAGAAGGAGATTAGCTTAGAAGAGAATGGAG 1665
Query 1623 -A-AAGA--G-G-AATCTAG-G-A-TATTCTGTAGTAGAAAGCAGCGATTT 1664
| |||| | | || |||| | | || ||||||||||||||||| |||||
Sbjct 1666 GAGAAGAAAGAGGAAGCTAGAGTAATAATCTGTAGTAGAAAGCAGTGATTT 1716
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83684308515
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5