BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483290
Length=1143
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42040.1 | Symbols: | CONTAINS InterPro DOMAIN/s: WRC (Inte... 1522 0.0
> AT2G42040.1 | Symbols: | CONTAINS InterPro DOMAIN/s: WRC (InterPro:IPR014977);
Has 219 Blast hits to 219 proteins in 19
species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants
- 215; Viruses - 0; Other Eukaryotes - 1 (source: NCBI
BLink). | chr2:17543034-17545230 FORWARD LENGTH=1225
Length=1225
Score = 1522 bits (824), Expect = 0.0
Identities = 1040/1135 (92%), Gaps = 51/1135 (4%)
Strand=Plus/Plus
Query 21 AAAAAGAGCTCACAACAAGAACACAACACCACCCACAAAGCCTTCTCCTTTATTTTTTCC 80
|||||||||||||||||||||||| | | || ||||||||||||| ||||||||||||
Sbjct 47 AAAAAGAGCTCACAACAAGAACAC-A-A-CA-CCACAAAGCCTTCCCCTTTATTTTTT-T 101
Query 81 CAAGTCCGTGTAACCaaaaacaaaaaaaaaaGATTA--CTCTC-TTAATATCTGGGTTTA 137
| |||||||||| |||| ||| |||||||||| ||||| ||||||||||||||||
Sbjct 102 C----CCGTGTAACC-AAAA-AAATCAAAAAGATTACTCTCTCTTTAATATCTGGGTTTA 155
Query 138 TACTACAGTCCTTCTTTGGTGCaaagatcccaaaaaa-caaaatcgaaagacagaa-aag 195
||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||
Sbjct 156 TACTACAGTCCTTCTTTGGTGCAAAGATCCCAAAAAATCAAAATCGAAAGAGAGAATAA- 214
Query 196 a-aaagaaggaagaaTC-TT-TCTGCTATATCTCCCGATGAGGATCCGGAAACGACAAGT 252
| || ||||||||||| || |||||| | |||| |||||||||||||||||||||||||
Sbjct 215 ATCAA-AAGGAAGAATCTTTATCTGCT-T-TCTCTCGATGAGGATCCGGAAACGACAAGT 271
Query 253 GCCTCTTCCTCTT-GCGTCTCTATTACCAGTTCCTCTATCAGATCTCTACTTTAACCGCT 311
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 272 GCCTCTTCCT-TTATCGTCTCTATTACCAGTTCCTCTATCAGATCTCTACTTTAACCGCT 330
Query 312 CACCGACGGCCACCGCGAGATACTTTCGCGGTGGTTATAGAGACGGAGGTGAAGGTTTTG 371
||||||||||||||||||||||||||||||||||||||| |||||| ||||| | |||||
Sbjct 331 CACCGACGGCCACCGCGAGATACTTTCGCGGTGGTTATAAAGACGGCGGTGATGATTTTG 390
Query 372 GTTCTCTTCAGCTTTCGCTTCCGCCGCCGTCTCCGATTTCTGATCGGCTGATTCAAAGAG 431
||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||
Sbjct 391 GTTCTCTTCAGCTTTCGCTTCCGCCGCCGTCGCAGATTTCTGATCGGCTTATTCAAAGAG 450
Query 432 ATTTGAT---GAAGAAGAAGGAGGTCGAGGCTTTGGATGATAATGGTCGTGATGGTGATG 488
||||||| ||||||| |||||||| |||||||||||| || | | |||||||||
Sbjct 451 ATTTGATAAAGAAGAAGGAGGAGGTCAAGGCTTTGGATG---AT-G--ATAATGGTGATG 504
Query 489 TAGACGTGATGAGTCGTACTGATGCTTCGGGCAGCAAGAATGCTAATCTCCGAGGAGAGT 548
||||||| | ||||||||||||||| |||||||||||||||| ||||| ||||||||| |
Sbjct 505 TAGACGTCAAGAGTCGTACTGATGCATCGGGCAGCAAGAATGTTAATCCCCGAGGAGAAT 564
Query 549 CCGACTCTTCAACACAAGTTGTCGAGAAGAATGAAAAGGTTGCATCTTTGAGGAAGAGAA 608
||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 565 CCGTCTCTTCAATACAAGTTGTCGAGAAGAATGAAAAGGTTGTGTCTTTGAGGAAGAGAA 624
Query 609 GAGGCTTTATAAACTTTGAGGATTACGAAGATGAGGAAGATGAAGAAGCTAGTGGCGGTG 668
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 625 GAGGCTTTATCAACTTTGAGGATTACGAAGATGAGGAAGATGAAGAAGCTAGTGGCGGTG 684
Query 669 GAGG-CG--GTAATAAAGGGAAAAAGAAAGGGAAAAAGAACGGTGGTGCGTTAGAGGAAG 725
|||| || |||||||||||||||||||| |||||||| |||||||| |||||||||||
Sbjct 685 GAGGCCGTATTAATAAAGGGAAAAAGAAAGCGAAAAAGAGCGGTGGTGGGTTAGAGGAAG 744
Query 726 GATCACGGTGCAGCCGTGTTAACGGTAGAGGATGGAGATGTTGTCAGCAAACGCTTGTTG 785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 745 GATCACGGTGCAGCCGTGTTAACGGTAGAGGATGGAGATGTTGTCAGCAAACGCTTGTTG 804
Query 786 GTTATTCTCTTTGTGAGCATCATCTCGGTAAAGGAAGGGTAAGGAGCATGAACAAGAGTG 845
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 805 GTTATTCTCTTTGTGAGCATCATCTCGGTAAAGGAAGGGTAAGGAGCATGAACAAGAGTG 864
Query 846 GTGGTGGTCGTGGCGGCGAGAAAAAGGCGGTGGTGGTGGAAGTGAAGAAGAAGAGAGTGA 905
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 865 GTGGTGGTCGTGGCGGCGAGAAAAAGGCGGTGGTGGTGGAAGTGAAGAAGAAGAGAGTAA 924
Query 906 AGCTTGGGATGGTAAAGGCACGTTCGATAAGTAGTTTGCTTGGACAAACCAGCACTAGTG 965
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 925 AGCTTGGCATGGTAAAGGCACGTTCAATAAGTAGTTTGCTTGGACAAACCAGCACTAGTG 984
Query 966 GTGGTA---GTGGTGATGTTGA---GGGTGAGATAAGTGCACCTGCTGATCAGTTTGCTG 1019
|||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 985 GTGGTACTAGTGGTGATGTTGATCAGGGTGAGATAAGTGCACCTGCTGATCAGTTCGCTG 1044
Query 1020 CATGTGATAGGTAAGTCTGTTGACCAGCATTTGCATGTATATG--T-T-T--ATGTACAT 1073
||||||||| ||| ||||||||| ||||||||||||||||||| | | | |||| ||
Sbjct 1045 CATGTGATAAGTAGGTCTGTTGATCAGCATTTGCATGTATATGGATATGTGTATGTTTAT 1104
Query 1074 TGTACATGATGATAATGGACATAGCTCTATGTATTGGGTGTGTGAACATGT-TAT 1127
||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1105 -GTACATGATGATAATGGGCATAGCTCTATGTATTGGGTGTGTGAACATGTCTAT 1158
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56074008765
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5