BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483291
Length=971
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42060.1 | Symbols: | Cysteine/Histidine-rich C1 domain fam... 1362 0.0
> AT2G42060.1 | Symbols: | Cysteine/Histidine-rich C1 domain family
protein | chr2:17548095-17549069 FORWARD LENGTH=975
Length=975
Score = 1362 bits (737), Expect = 0.0
Identities = 842/893 (94%), Gaps = 5/893 (1%)
Strand=Plus/Plus
Query 47 AAACACACAAGATTGCTAAATCAAAAAGAGACAAACTCAATGGAGTACAAACATTTCAGC 106
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 63 AAACACACAAGATTGCTAAATC--AAAGAGACAAACTCAATGGAGTACAAACATTTCAGC 120
Query 107 CATCCACACTCTCTAAAACTCCAACAGATTCAGCCACATGGAAGCTCAGATTCTTTAGTA 166
||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 121 CATCCACACACTCTAAAACTCCAACAGATTCAGCCACATAAAAGCTCAGATTCTTCAGTA 180
Query 167 ATCTGCTCAGGTTGCGAATCAGCCATCTCTGATTCCGAAACCGCATATATCTGTTCTACA 226
|||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| |||
Sbjct 181 ATCTGCTCAGGTTGTGAATCAGCCATCTCTGAATCCGAAACCGCGTATATCTGTTCAACA 240
Query 227 TGTGACTTCAATCTTCATGAGCAATGTGGTAACGCAGTGCGTGGGATGCTACATCCTTCT 286
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 241 TGTGACTTCAATCTTCATGAGCAATGTGGTAACGCAGTGCGTGGGATGCAACATCCTTCT 300
Query 287 CACGCTGGTCTCCACCACTTGACTCTAGTCCCTTACACAACTTACAGCGCCGGTATCTTC 346
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 301 CACGCTGGTCTCCACCACTTGACTCTAGTCCCTTACACAACTTACAGCGCTGGTACCTTC 360
Query 347 CTCTGCAGAGCCTGTGGCTGCACTGGAGGTAAAGGGTTCTCTTACTGTTGTCCTTTGTGT 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CTCTGCAGAGCCTGTGGCTGCACTGGAGGTAAAGGGTTCTCTTACTGTTGTCCTTTGTGT 420
Query 407 GACTTTGACCTCCATGTTCAATGCGCACACCTGCCTCAGGTCTTGGTTCATGAGTCTCAT 466
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 421 GACTTTGACCTTCATGTTCAATGCGCTCACCTGCCTCAGGTCTTGGTTCATGAGTCTCAT 480
Query 467 CCTCTCCACAGTCTACTTCTTGTCTACAACAGTGCTCCTGCTATGCCTTTTACTCAGTTT 526
||| | || ||||| |||||||||||||||||| ||||| ||||| ||||||||||||||
Sbjct 481 CCTATGCATAGTCTTCTTCTTGTCTACAACAGTACTCCTCCTATGTCTTTTACTCAGTTT 540
Query 527 GGTTACGCGAATCAGTTTGTTTGCAATCTTTGCAACATGGCTATGGATGGTAGGTTTTGG 586
|||| || ||||||| |||||||||||||||| || ||| ||||||||||||||||||||
Sbjct 541 GGTTTCGGGAATCAGCTTGTTTGCAATCTTTGTAATATGACTATGGATGGTAGGTTTTGG 600
Query 587 TCTTATAACTGTTATGCTTGTAACTATCATATTCATGCTTCATGTGCTGTGAATAAGCCT 646
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TCTTACAACTGTTATGCTTGTAACTATCATATTCATGCTTCATGTGCTGTGAATAAGCCC 660
Query 647 AAGCCAGTGGCTCCTTCTGCTGAGAAGTGTGGGACGAGTGATGAAGGAAAGATACCGACC 706
|| ||||||||| ||||||||||||| |||||| |||||||||||||||||| ||||||
Sbjct 661 AATCCAGTGGCTGCTTCTGCTGAGAACTGTGGGGCGAGTGATGAAGGAAAGACACCGACT 720
Query 707 CCTGAATCTCTTCCTGTTCAGGGTTTGGAGGCTGTGCAGACGGAACAAGTAGCTGCAACA 766
|||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||| |
Sbjct 721 GCTGAATCTGTTCCTGTTCAGGGTTTGGAGACTGAGCAGACGGAACAAGTAGCTGCAATA 780
Query 767 ACAGAGCAAGTGGAAGATCCAGCTTTGAGGCAACAGCTTGAACTTCAGAAGCTCCAGCTT 826
|||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||
Sbjct 781 ACAGAGCAAGTGGAAGATCCAGTTTTGAGGCAACAGCTTGAGCTTCAGAAGCTTCAGCTT 840
Query 827 GAGCTAGATATGAGTTCTGCTATCGCAAACATGATTGGTTCCTTCAATCTCAGTTCGTTT 886
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 841 GAGCTAGATATGAGTTCTGCTCTCGCAAACATGATTGGTTCCTTCAATCTCAGTTC-TTT 899
Query 887 -GTTTGAAGTATCTTTGTATTTCAGTTTGTTTGATTG-ATGCATTTACATGTG 937
||||||||| ||||||| ||||||||||||||||| |||||||||||||||
Sbjct 900 CGTTTGAAGTGTCTTTGTGTTTCAGTTTGTTTGATTTTATGCATTTACATGTG 952
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47521503062
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5