BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483292
Length=1346
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42070.1 | Symbols: ATNUDT23, ATNUDX23, NUDX23 | nudix hydro... 1914 0.0
> AT2G42070.1 | Symbols: ATNUDT23, ATNUDX23, NUDX23 | nudix hydrolase
homolog 23 | chr2:17549091-17551175 REVERSE LENGTH=1366
Length=1366
Score = 1914 bits (1036), Expect = 0.0
Identities = 1264/1368 (92%), Gaps = 40/1368 (3%)
Strand=Plus/Plus
Query 1 ATCTCCTCAAATGTCAAATTTTT---ACGAAATTGATTGGCCATCGAGAGAGAAGCTTCA 57
||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||
Sbjct 1 ATCTCCTCAAATGTCAAATTTTTGGAACGAAATAGATTGGCCATCGAGAGAGGAGCTTCA 60
Query 58 TTGACAAAAAGAAG-CCTAT---TGAAATTCCGGTGACA-TTCCGGTGCGTATAATGCTC 112
||||| |||| || ||||| | || | | || | |||||||||||||||||||
Sbjct 61 TTGAC--AAAG-AGTCCTATAGCCGGAAGT--GAAGAAATTTCCGGTGCGTATAATGCT- 114
Query 113 AAA-GCCGTTCAGATCTTGGGTTGGTCATCAGGGTTAACCATCTCACAGAGATTGACCAA 171
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 115 AAAGGCCGTCCAGATCTTGGGTTGGTCATCAGGGTTAACCATCTCACAGAGATTGACCAA 174
Query 172 AACTCGCAAGTCCTCTAGCGTCTCTTTCATCTCTTCATCTCTCAATCTCTCCACTTTCGC 231
|||||||||||||||| ||||||||||||||| ||||||||||| ||| | || |
Sbjct 175 GACTCGCAAGTCCTCTACCGTCTCTTTCATCTCGTCATCTCTCAA--TCT---C--TC-C 226
Query 232 TTCTGTCACTTCGAGCTCTCCTCGAAAAATCTTCTCTTTTAACCCAACTC-GAATGTCTT 290
||||||||||||||||||||||| | |||||||||||| || ||||| | |||||||||
Sbjct 227 -TCTGTCACTTCGAGCTCTCCTCGGAGAATCTTCTCTTTCAAGCCAAC-CAGAATGTCTT 284
Query 291 CCTCACTTCCCGGGTCTGACCCAGTTGCAAATTCTCCGACTTTCGTCTCTGTTCAATCAG 350
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 285 CCTCACTTCCCGGGTCTGACCCAGTTGCAAATTCCCCGACTTTCGTCTCTGTTCAATCAG 344
Query 351 CTGGGGATGTTCGTAAGATAAAGTTCTGTCAATGGTGTGGAGGACCGACGAAGCATGAGA 410
|||| ||||||||||||||||||||||||||||||||||||||||| || |||||||| |
Sbjct 345 CTGGAGATGTTCGTAAGATAAAGTTCTGTCAATGGTGTGGAGGACCAACCAAGCATGAAA 404
Query 411 TACCTGACGGTGAAGAGAAATTGAGAGCTATTTGCACACATTGCGGCAAAATCGCATATC 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 405 TACCTGACGGTGAAGAGAAATTGAGAGCTATTTGCACACATTGCGGCAAAATCGCTTATC 464
Query 471 AGAATCCTAAGATGGTTGTAGGTTGCCTTATAGAGCATGAAGAAAAAGTTTTACTTTGCA 530
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 465 AGAATCCTAAGATGGTTGTTGGTTGCCTTATAGAGCATGAAGGAAAAGTTTTACTTTGCA 524
Query 531 AGCGTAACATTCAACCTTCACATGGTTTATGGACTCTTCCTGCTGGCTATCTAGAAGTTG 590
| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 525 AACGTAACATTCAACCTTCACACGGTTTATGGACTCTTCCTGCTGGTTATCTAGAAGTTG 584
Query 591 GAGAGTCAGCTGCACAAGGAGCAATGAGGGAAACTTGGGAAGAAGCAGGAGCCACTGTGG 650
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 585 GAGAATCAGCTGCACAAGGAGCAATGAGGGAAACTTGGGAAGAAGCAGGAGCTACTGTGG 644
Query 651 AAGTTATTTCACCTTTTGCGCAACTCGATATTCCTCTTATTGGCCAAACTTATGTTATAT 710
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 645 AAGTTATTTCACCTTTTGCTCAACTTGATATTCCTCTTATTGGCCAAACTTATGTTATAT 704
Query 711 TCTTAGCCAAACTGAAGAACCTGCATTTCGCTCCTGGTCCTGAATCATTGGAGTGTCGTC 770
|||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||
Sbjct 705 TCTTAGCCAAACTGAAGAACCTGCATTTTGCACCTGGTCCTGAATCATTGGAGTGCCGTC 764
Query 771 TTTTTGCACTAGATGAGATACCGTTTGATTCCTTGGCTTTTTCATCTATATATGTTACCT 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 765 TTTTTGCACTAGATGAGATACCGTTTGATTCCTTGGCTTTTTCATCTATATATGTTACCT 824
Query 831 TAAATTTGTACTTGGAAGACCTGAAAAAGGGGAAACTAAAGTATCACTATGGTACAATAA 890
||||||||||||||||||| |||||||| ||||||||||||| |||||||||||| ||||
Sbjct 825 TAAATTTGTACTTGGAAGATCTGAAAAAAGGGAAACTAAAGTTTCACTATGGTACGATAA 884
Query 891 ATAAAAGGCCTGGAAGTAGTCCTTCAGATATTCGTGCCTTTAGTCTTGATTACCATCTGC 950
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 885 ATAAAAGGCCTGGAAGTAGTCCTTCAGATATTCGCGCCTTTAGTCTTGATTACCATCTGC 944
Query 951 AGCCGTGACTCGAGTTTACAGAAGCAGCTTCTGGTTTTGCTTTGTTCT-CCATGTCGAGT 1009
| |||| |||| |||||||||||||||||||||| || |||||||||| |||||||||||
Sbjct 945 AACCGTAACTCAAGTTTACAGAAGCAGCTTCTGGATTGGCTTTGTTCTTCCATGTCGAGT 1004
Query 1010 CTTGTCATTTCGCAACTCGTTGTTACGAAAAGAAAAGGAAAGATGAAGTTGCTTATGTGA 1069
||| ||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||
Sbjct 1005 CTTTTCATTTCGCAACTCGATGTTACTAAAAGAAAAGGAATGATGAAGTTGCTTATGTGA 1064
Query 1070 GAGATTCCTTGGACAGATGAGAAACAACACCAAAGAAGATAATTTGGACAGAGTTTCGTT 1129
|||||||||||||||||||||||| ||| | |||||||||||||||||||||||| |||
Sbjct 1065 GAGATTCCTTGGACAGATGAGAAAGAACTCGGAAGAAGATAATTTGGACAGAGTTTTGTT 1124
Query 1130 TTGTATTTGTGGTGGAGAAATAGGTTTGGATGACTTTTAGGTAACTCATGTCAGATGTTA 1189
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 1125 CTGTATTTGTGGTGGAGAAATAGGTTTGGATGACTTTTAGGTCTCTCATGTCAGATTTTA 1184
Query 1190 TGGCTGAACAATGT--ATCTTT-TCTG-----G-TTTCAGTTGCCTCAAATGTAAAATGA 1240
|||||||||||||| |||||| |||| | ||||||||||||||||||||||| ||
Sbjct 1185 TGGCTGAACAATGTGTATCTTTATCTGTTTCTGGTTTCAGTTGCCTCAAATGTAAAAGGA 1244
Query 1241 AAAAT-TCAGATGTGGATGCAACACATTTTGATCAATCTTTGTGTAATTAAGTCAC-GTG 1298
|||| ||| |||||||||||||| | |||||||||||||||||||||||||||| |||
Sbjct 1245 AAAAAATCATATGTGGATGCAACA--TGTTGATCAATCTTTGTGTAATTAAGTCACCGTG 1302
Query 1299 TTACTGTTACTTCAAGGTCTTCAGTGAAAGAAAGAGAAATCAAAAAGA 1346
||||||||||||||||||||||||||||||||||| ||| |||| |||
Sbjct 1303 TTACTGTTACTTCAAGGTCTTCAGTGAAAGAAAGATAAACCAAATAGA 1350
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66264719400
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5