BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483293
Length=960
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42080.1 | Symbols: | Chaperone DnaJ-domain superfamily pro... 1471 0.0
> AT2G42080.1 | Symbols: | Chaperone DnaJ-domain superfamily protein
| chr2:17553240-17555504 REVERSE LENGTH=990
Length=990
Score = 1471 bits (796), Expect = 0.0
Identities = 910/962 (95%), Gaps = 19/962 (2%)
Strand=Plus/Plus
Query 1 TCCTCCGATCTCACAGAGATGAACGCCGCCATTAGAGCAGCGATTCTCCGACCACAAAGC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 12 TCCTCCGATCTCACAGAGATGAACGCCGCCATTAGAGCAGCGATTCTCCGACCACAAAGC 71
Query 61 TATTCTTCTCAGCTCAAAGTCGCGTTATTTCATTCTACTCCTGTCTTAGAACGCAAACGT 120
|||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||
Sbjct 72 TATTCTTCTCAGCTCAAAACCGCGTTTTTTCATTCAACTCCTGTCTTAGAACGCAAACGT 131
Query 121 CGCACTTCCTGGGAATCGAAATCAAATGTTCATAAGAAGAGATTCAGAAGAATGAGGGAA 180
||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||
Sbjct 132 CGCACTTCCTGGGAATCGAAAGCAAATGTTCACAAGAAGAGGTTCAGAAGAATGAGGGAA 191
Query 181 AAGCAAGAGTTATTGCGTAATGTCAATGCTTTTGCTGCAAACATGTTTACGAGCTGGCAT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 192 AAGCAAGAGTTATTGCGTAATGTCAATGCTTTTGCTGCAAACATGTTTACGAGCTGGCAT 251
Query 241 GATGAGTTTGATGATGATGGTCCCTCCTCCCGGAAGCAAACCTCGTGGTTCAAAAAACAG 300
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 252 GATGAGTTTGATGACGATGGTCCCTCATCCCGGAAGCAAACCTCGTGGTTCAAAAAACAG 311
Query 301 TACTCCAAGGAACCCAAAGGAAACCAGAATAACAAACACGGTCCCTACAGTTGGGGTAAA 360
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 312 TACTCCAAGGAACCCAAAGGAAACCAGAATAACAAACACGGCCCCTACACTTGGGGTAAA 371
Query 361 AGGAATTTCGATTTTTGCGAAGTTGATGAGGACTTTGACGTCGACTATGTATTCCGAACT 420
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 372 AGGAATTTTGATTTTTGCGAAGTTGATGAGGACTTTGATGTCGACTATGTATTCCGAACT 431
Query 421 GCTTTTGGTGGATCCCGAGGTTTCTCTTTTTCATTCACCCATGAAGAGGATGAACCTCAA 480
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 432 GCTTTTGGAGGATCCCGAGGTTTCTCTTTTTCATTCACTCATGAAGAGGATGAACCTCGA 491
Query 481 TGGCGGCATCACTCTTCAAGGTTTTCCAACAACTCTAAGAGGTCTTGGAGATCAAAATAT 540
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 492 TGGCGGCATCACTCTTCAAGGTTTTCCAACAACTCTAACAGGTCTTGGAGATCGAAATAT 551
Query 541 CAGTTAGATGAAGATGATGAAGAAGAAGACTATACTTCAGACTCCAGCGACTCTGAGTCT 600
| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 552 CGGTTAGATGAAGATGAAGAAGAAGAAGACTATACTTCAGACTCCAGTGACTCTGAGTCT 611
Query 601 GAGCCAAACCAAGTTTCTCATAGACAAGCACTTGGCCTGAGTCCTTCAGGTCCCTTAAAC 660
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 612 GAGCCAAACCAAGTTTCTCATAGACAAGCACTTGGCCTGAGTCCCTCAGGTCCCTTAAAC 671
Query 661 CTTAAAGATGTCAAACATGCGTATCGAACTTGTGCTTTAAAATGGCATCCAGATCGTCAT 720
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 672 CTTAAAGATGTCAAACATGCGTATCGAACTTGTGCATTAAAATGGCATCCAGATCGTCAT 731
Query 721 CAAGGCTCCACCAAGGAGGCGGCTGAAGCAAAGTTCAAGCTCTGTAGTGTGGCTTATCAA 780
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 732 CAAGGCTCTACCAAGGAGGCGGCTGAAGCAAAGTTCAAGCTCTGCAGTGTGGCTTATCAA 791
Query 781 TCTTTATGCGAAAAGCTATCGGTGAACTAAGATAAAGAGTTAGATAGATCTTGATCACTT 840
|||||||| ||||||||||| ||||||||||| | |||||||| ||||||| ||||
Sbjct 792 TCTTTATGTGAAAAGCTATCTGTGAACTAAGA----G--TTAGATAGGTCTTGATTACTT 845
Query 841 AGAGATACCTCATTACAATAATTTCCAAATTGTTTCATTTTTAAGCTTAGTAGAGGATCC 900
|||||||||||||||||||||||||| |||||||||||||| |||| || ||
Sbjct 846 AGAGATACCTCATTACAATAATTTCCGAATTGTTTCATTTTG--GCTTTGT------TC- 896
Query 901 AAGCAAAATTGCCTTTGTTCTGTCATTTTT-TATTTCTTTGAAAA-CTACTACTGATGTG 958
|||||||||||||||||||||||| ||||| |||||||| |||| ||||||||||||||
Sbjct 897 AAGCAAAATTGCCTTTGTTCTGTC-TTTTTCTATTTCTTC-AAAATCTACTACTGATGTG 954
Query 959 TA 960
||
Sbjct 955 TA 956
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46968927445
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5