BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg483297

Length=476
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G42110.1 | Symbols:  | unknown protein; Has 27 Blast hits to...   732    0.0  


> AT2G42110.1 | Symbols:  | unknown protein; Has 27 Blast hits 
to 27 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes 
- 2 (source: NCBI BLink). | chr2:17562152-17562733 REVERSE 
LENGTH=497
Length=497

 Score =  732 bits (396),  Expect = 0.0
 Identities = 454/481 (94%), Gaps = 7/481 (1%)
 Strand=Plus/Plus

Query  1    ATGGATCTTGTTGTTGTCATAGAGACTAGTATTCCAACAAAAATCACTCACGTGAACAAG  60
            ||||||||||||||| ||| |||||||| |||||| || |||||||||||||||||||||
Sbjct  2    ATGGATCTTGTTGTTATCACAGAGACTACTATTCCGACGAAAATCACTCACGTGAACAAG  61

Query  61   AAATCCTCCGACGAATTGCTCCGTAAGTTCGCCGATCCCGACGACGTCGACGAGTC---A  117
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||   |
Sbjct  62   AAATCCTCCGACGAATTGCTCCGTAAGTTCGCCGATCCTGACGACGTCGACGAGTCGTCA  121

Query  118  AAGTCAACGAAACGCCGGAAGAAATCAGCTAAGAGTTCTTCTCGAGAGAACGGCGTTGAC  177
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  122  AAGTCAACGAAACGCCGGAAGAAATCAGCTAAGAGTTCTTCTCGAGAGAAGGGCGTTGAC  181

Query  178  ATCGAAAGTAACAGTATTGGTTTGGTGGAGAGGAAACGGCTCTTGCTTGCTCCGGCGAGT  237
            ||||||||||||| || ||| || |||||||||||||||||||||||||| |||||||||
Sbjct  182  ATCGAAAGTAACACTAGTGGCTTAGTGGAGAGGAAACGGCTCTTGCTTGCCCCGGCGAGT  241

Query  238  AAACGGCGATCTCTGTTTCTCCGGCAGCTTGCTTCTGGAAAATCACATCTCAGGAACAAG  297
            |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  242  AAACGGAGATCTCTGTTTATCCGGCAGCTTGCTTCTGGAAAATCACATCTCAGGAACAAG  301

Query  298  TCTCTCGTCAGAACTATCGGCAAGACATGGCGTAAAACAATGGAAGGAGCTTCAAAAGTT  357
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  302  TCTCTCGTCAGAACCATCGGCAAGACATGGCGTAAAACAATGGAAGGAGCTTCAAGAGTT  361

Query  358  TTCATCGAGAAGCATTATAACAGACACAGGCGTCTCATCAACGACGTCGTTTAAG-TTTC  416
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| 
Sbjct  362  TTCATCGAGAAGCATTATAACAGACACAGGCGTCTCACCAACGACGTCGTTTAAGCTTT-  420

Query  417  TTCAA-CttttttattttttCTCACTATTTTATATTCGTTTGTATTATCCTCACGTTTAG  475
            ||||| ||||||| | |||||||||||||||| ||||||||||||||| |||||||||||
Sbjct  421  TTCAATCTTTTTT-TCTTTTCTCACTATTTTACATTCGTTTGTATTATTCTCACGTTTAG  479

Query  476  T  476
            |
Sbjct  480  T  480



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22655600297


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5