BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg483297 Length=476 Score E Sequences producing significant alignments: (Bits) Value AT2G42110.1 | Symbols: | unknown protein; Has 27 Blast hits to... 732 0.0 > AT2G42110.1 | Symbols: | unknown protein; Has 27 Blast hits to 27 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr2:17562152-17562733 REVERSE LENGTH=497 Length=497 Score = 732 bits (396), Expect = 0.0 Identities = 454/481 (94%), Gaps = 7/481 (1%) Strand=Plus/Plus Query 1 ATGGATCTTGTTGTTGTCATAGAGACTAGTATTCCAACAAAAATCACTCACGTGAACAAG 60 ||||||||||||||| ||| |||||||| |||||| || ||||||||||||||||||||| Sbjct 2 ATGGATCTTGTTGTTATCACAGAGACTACTATTCCGACGAAAATCACTCACGTGAACAAG 61 Query 61 AAATCCTCCGACGAATTGCTCCGTAAGTTCGCCGATCCCGACGACGTCGACGAGTC---A 117 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | Sbjct 62 AAATCCTCCGACGAATTGCTCCGTAAGTTCGCCGATCCTGACGACGTCGACGAGTCGTCA 121 Query 118 AAGTCAACGAAACGCCGGAAGAAATCAGCTAAGAGTTCTTCTCGAGAGAACGGCGTTGAC 177 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 122 AAGTCAACGAAACGCCGGAAGAAATCAGCTAAGAGTTCTTCTCGAGAGAAGGGCGTTGAC 181 Query 178 ATCGAAAGTAACAGTATTGGTTTGGTGGAGAGGAAACGGCTCTTGCTTGCTCCGGCGAGT 237 ||||||||||||| || ||| || |||||||||||||||||||||||||| ||||||||| Sbjct 182 ATCGAAAGTAACACTAGTGGCTTAGTGGAGAGGAAACGGCTCTTGCTTGCCCCGGCGAGT 241 Query 238 AAACGGCGATCTCTGTTTCTCCGGCAGCTTGCTTCTGGAAAATCACATCTCAGGAACAAG 297 |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 242 AAACGGAGATCTCTGTTTATCCGGCAGCTTGCTTCTGGAAAATCACATCTCAGGAACAAG 301 Query 298 TCTCTCGTCAGAACTATCGGCAAGACATGGCGTAAAACAATGGAAGGAGCTTCAAAAGTT 357 |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| Sbjct 302 TCTCTCGTCAGAACCATCGGCAAGACATGGCGTAAAACAATGGAAGGAGCTTCAAGAGTT 361 Query 358 TTCATCGAGAAGCATTATAACAGACACAGGCGTCTCATCAACGACGTCGTTTAAG-TTTC 416 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct 362 TTCATCGAGAAGCATTATAACAGACACAGGCGTCTCACCAACGACGTCGTTTAAGCTTT- 420 Query 417 TTCAA-CttttttattttttCTCACTATTTTATATTCGTTTGTATTATCCTCACGTTTAG 475 ||||| ||||||| | |||||||||||||||| ||||||||||||||| ||||||||||| Sbjct 421 TTCAATCTTTTTT-TCTTTTCTCACTATTTTACATTCGTTTGTATTATTCTCACGTTTAG 479 Query 476 T 476 | Sbjct 480 T 480 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22655600297 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5