BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483299
Length=1460
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42120.1 | Symbols: POLD2 | DNA polymerase delta small subun... 2305 0.0
> AT2G42120.1 | Symbols: POLD2 | DNA polymerase delta small subunit
| chr2:17563157-17566032 REVERSE LENGTH=1518
Length=1518
Score = 2305 bits (1248), Expect = 0.0
Identities = 1392/1461 (95%), Gaps = 11/1461 (1%)
Strand=Plus/Plus
Query 1 ATGGAAATCGACTCCGAGAAGATTCACGAACGGAAGCATTCCGATTACAATTCACTGCAG 60
|||||||||||||||||||| ||||||||| ||||||| |||||||||||||| ||||||
Sbjct 68 ATGGAAATCGACTCCGAGAAAATTCACGAAAGGAAGCAATCCGATTACAATTCGCTGCAG 127
Query 61 GATGAGAGATTCGAGATACAGAAGGAGATGTACAGAGGGCAGCAATACAGTCAGATTTAC 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 128 GATGAGAGATTCGAGATACAGAAGGAGATGTACAGAGGTCAGCAATACAGTCAGATTTAC 187
Query 121 TTTGCTCGTCTTCATCTCATGAGAACACTTCTCTACTCTCTTGCCCCTACTTGGAAACCC 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 188 TTTGCTCGTCTTCATCTCATGAGAACACTTCTCTACTCTCTTGCTCCTACTTGGAAATCT 247
Query 181 CATTTGCCTGTTTGTAAGGTTTTGGGACTTGAAAAAGGAAAAGAATGCGTAATTGTAGGA 240
||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 248 CATTTGCCTGTGTGTAAGGTTTTGGGACTTGAAAAAGGAAAAGAATGCATAATTGTGGGA 307
Query 241 ACCTTGTTCAAACACATGAAGCTTAAACCTTGTGTTCTCGATGAATATTCTAAAGAGAGG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 308 ACCTTGTTCAAACACATGAAGCTTAAACCTTGTGTTCTCGATGAATATTCTAAAGAGAGG 367
Query 301 TCAGTTACTCCGCTTGTTAAACCACATAACTTTATGCATCCTGATGATAATCTGATCCTC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 TCAGTTACTCCGCTTGTTAAACCACATAACTTTATGCATCCTGATGATAATCTGATCCTC 427
Query 361 GAAGACGAGAGTGGGAGAGTTAAGCTTGCTGGTTCTGCACTTTCACCTGCTATATATGTG 420
||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||
Sbjct 428 GAAGACGAGAGTGGGAGAGTTAAGCTTGCTGGTTCCGCACTTTCACCTGCGATTTATGTG 487
Query 421 ACAGGTGTTGTTGTTGCATTGCATGGGAAGGAAACTAATGCTGGTGAATTCTTTGTTGAG 480
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 488 ACAGGTGTTGTTGTTGCACTGCATGGGAAGGAAACTAATGCTGGTGAATTCTTTGTTGAG 547
Query 481 GATGTATTAGAAGCTGGTTTACCGCCTCAGATAGAGCGGCCTATCGATCTACAGGATGAT 540
|||||| |||||||||||||||| |||||||| ||||||||||||||||||||||| |||
Sbjct 548 GATGTACTAGAAGCTGGTTTACCACCTCAGATTGAGCGGCCTATCGATCTACAGGAAGAT 607
Query 541 AAATACGTTGTGTTATTGTCGGGCCTTTGCATTGGAAGCAAATCGGCTAATCCCTTGCAA 600
||||| || |||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 608 AAATATGTCGTGTTATTGTCGGGCCTTTGTATTGGAAGCAAATCGGCTAATCCCCTGCAG 667
Query 601 TTTCAGCTCCTTGTTGACCATATAACTGGGCATCTCGGAGATGAGGAGGAACAAGGCCTT 660
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 668 TTTCAGCTTCTTGTTGACCATATAACTGGGCATCTCGGAGATGAGGAGGAACAAGGCCTT 727
Query 661 GCAGCACAGATAGTTCATGTAGTAATTGCTGGAAACTCTGTTGAATTTCCCCGCAAACTC 720
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 728 GCAGCACAGATAGTTCATGTAGTAATTGCTGGAAACTCTTTTGAATTTCCCCGCAAACTC 787
Query 721 ATTAATGGCCAGAACTTGGCCTCAAAAGATCAATCAACACTGTATGAGCCCATCAAAGAG 780
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 788 ATTAATGGCCAGAACTTGGCCTCGAAAGATCAATCGACACTGTATGAGCCCATCAAAGAG 847
Query 781 CTTGATATCATGTTAAACCAGATAGCTGCAGGAGTTTCAGTAGATATCATGCCAGGCACG 840
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 848 CTTGATATCATGTTAAGCCAGATAGCTGCAGGAGTTTCAGTAGATATCATGCCAGGCACG 907
Query 841 AATGATCCAGCTAACTTCGCATTGCCTCAGCAGCCTCTGAATAGATGTCTTTTCCCTGGA 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 908 AATGATCCAGCTAACTTCGCATTGCCTCAGCAGCCTCTGAATAGATGTCTTTTCCCTGGA 967
Query 901 TCTTCACCTTATAACACCTTCAGATCATGTACAAATCCTCACTCATTTGATCTCGATAAT 960
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 968 TCTTCACCTTATAACACCTTCAGATCATGTACAAATCCTCACTCATTTGATGTCGATAAT 1027
Query 961 ATAAGATTTCTGGGAACTTCTGGTCAGAACATCGATGACCTTGACAAGTACTCAGAGGCT 1020
|| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1028 ATCAGATTTCTTGGAACTTCTGGTCAGAACATCGATGACCTTGGCAAGTACTCAGAGGCT 1087
Query 1021 AAAAGCAAGCTTGATTTTGTTGAAAGAACGCTGAGGTGGAGACATCTTGCCCCCACTGCA 1080
|| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1088 AAGAGCAAGCTTGATTTTGTGGAAAGAACGCTGAGGTGGAGACATCTTGCCCCAACTGCA 1147
Query 1081 CCTAATACACTTGGTTGTTATCCTTTCACCGATAGAGACCCTTTCTTAATTGAAACTTGC 1140
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1148 CCTAATACACTCGGTTGTTATCCTTTCACCGATAGAGACCCTTTCTTGATTGAAACCTGC 1207
Query 1141 CCTCATGTCTACTTCGT-GGGAAATCAAGAGAAATATGACAACCGTTTGTTAAAGGGGTC 1199
|| |||||||||||||| ||||| |||||| |||||||||||||||||| ||||||||||
Sbjct 1208 CCGCATGTCTACTTCGTCGGGAA-TCAAGATAAATATGACAACCGTTTGATAAAGGGGTC 1266
Query 1200 AGAAGGGCAACTTGTTCGGTTGATCTGCATTCCTAAGTTCTGTGAGATCGGAATTGCTGT 1259
||||||||| ||||| ||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 1267 AGAAGGGCAGCTTGTCCGGTTGATCTGCATTCCTAAGTTCTGTGAGACCGGTATTGCTGT 1326
Query 1260 TGCGGTGAACCTAAGAAATCTGGAATGTCATACTCTAAGCTTTAGCACTCAGATAAACCA 1319
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 1327 TGCGGTGAACCTAAGAAATCTGGAATGTCACACTTTAAGCTTTAGCACTCAGATAAACCA 1386
Query 1320 ATTATAACATTGAGTTGCTACTTTGGTAGATTATTTCCTTGTCTTGAAGATGTAATGTTA 1379
|| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1387 ATCATAACATTGAGTTGCTACTTTGGTAGATTATTTCCT-GTCTTGAAGATGTAATGTTG 1445
Query 1380 AGCTTTTTCACTCACACTTTCCCATGTTCTAACCAAGTGTTATTTCTTTTGTTAAAAATC 1439
|||||||||| | |||| ||| ||||||||||||| |||| | ||||||||||
Sbjct 1446 AGCTTTTTCAGTAACACACTCCTATGTTCTAACCAAATGTT-T-------GTTAAAAATC 1497
Query 1440 CTTGTTCTTTAGTGGAACTTC 1460
||| ||||| |||||||||||
Sbjct 1498 CTTTTTCTTGAGTGGAACTTC 1518
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71987581530
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5