BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483302
Length=1090
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42130.4 | Symbols: | Plastid-lipid associated protein PAP ... 1491 0.0
AT3G58010.1 | Symbols: PGL34 | plastoglobulin 34kD | chr3:21475... 601 5e-171
> AT2G42130.4 | Symbols: | Plastid-lipid associated protein PAP
/ fibrillin family protein | chr2:17566185-17568144 FORWARD
LENGTH=1185
Length=1185
Score = 1491 bits (807), Expect = 0.0
Identities = 919/974 (94%), Gaps = 4/974 (0%)
Strand=Plus/Plus
Query 1 ATTCTCAATCTTTCGTGTTTT-GTC-TCTTTCACCTCCTTCTTCTTCAATGGCGTTGTTA 58
|||||||||||||||| |||| | || ||| || |||||||||||||||||||| ||
Sbjct 12 ATTCTCAATCTTTCGT-TTTTCACCTTC-TTCTTCTTCTTCTTCTTCAATGGCGTTGATA 69
Query 59 CATGGTTCGATTCCTGGTACGTCTGCGGTTCGATTGGGCTTTTCAACCTCAGCGTCACCG 118
||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 70 CATGGTTCGGTTCCTGGTACGTCTGCGGTTCGATTGGTTTTTTCAACCTCAGCGTCACCG 129
Query 119 TCGAGAGTTTCTCTCGTTGTTCCGGTGGTGAAGCAGGGTTGGAAGAATTCGTGCCGGAGA 178
|||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 130 TCGAGATTTTGTCTCAATGTTCCGGTGGTGAAGCAGGGTTGGAAGAATTCGTGCCGGAGA 189
Query 179 AGAGTTTTAAGAGCAATGGTGCAGGAAACAGTTTTAGGATCTCCTTCGGTTTACGCCAGA 238
|| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 190 AGGGTTTTAAGAGCAATGGTGCAGGAAACAGTTCAAGGATCTCCTTTGGTTTACGCCAGA 249
Query 239 GAAATGGAGCGCCTTTCTGCTAAGGAATCGCTAGTTCTCGCTTTGAAGGATGCTGGAGGC 298
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 250 GAAATGGAGCGCCTTTCTGCTAAGGAATCGCTACTTCTCGCTTTGAAGGATGCTGGAGGC 309
Query 299 TTTGAGGCTTTAGTTACAGGGAAAACAACTAATATGCAAAGGATCGATGTGAATGAGAGA 358
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 310 TTTGAGGCTTTAGTTACAGGGAAAACAACTAATATGCAAAGGATCGATGTTAATGAGAGG 369
Query 359 ATTACTAGTCTAGAGCGGCTTAACCCGACTCCTAGACCAACCACGTCTCCTTGTTTCGAA 418
||||| ||||||||||||||||| || ||||| |||||||||||||||||||||||||||
Sbjct 370 ATTACGAGTCTAGAGCGGCTTAATCCAACTCCGAGACCAACCACGTCTCCTTGTTTCGAA 429
Query 419 GGCAGATGGAATTTTGAGTGGTTTGGATCTGGAAGTCCTGGTTTACTCGCTGCTCGAGTT 478
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 GGCAGGTGGAATTTTGAGTGGTTTGGATCTGGAAGTCCTGGTTTACTCGCTGCTCGAGTT 489
Query 479 ATATTCGAGAGATTTCCTTCAACATTGGCGAATTTATCAAGAATGGAGATACTGATCAAG 538
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 490 ATATTCGAGAGGTTTCCTTCAACATTGGCGAATTTATCAAGAATGGAGATACTGATCAAG 549
Query 539 GATGCTAACGCAAAGGCGACGGCAAATATCAAACTTTTGAACTCGATAGAAAGCAAAATC 598
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 550 GATGCTAACGCAAAGGCGACTGCAAATATCAAACTTTTGAACTCGATAGAAAGCAAAATC 609
Query 599 ATTCTGTCATCAAAATTGACTGTCGAGGGACCTTTGAGATTGAAAGAAGAATATGTTGAA 658
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 610 ATTCTGTCATCAAAATTGACTGTTGAGGGACCACTGAGATTGAAAGAAGAATATGTTGAA 669
Query 659 GGTATGCTCGAATCCCCAACAGTCATTGAAGAAGCAGTTCCTGAACAGCTTAAAGGTGCA 718
|||||||| ||| | ||||||||||||||||||||||||||||||||||| ||| | ||
Sbjct 670 GGTATGCTTGAAACTCCAACAGTCATTGAAGAAGCAGTTCCTGAACAGCTAAAAAGCGCT 729
Query 719 TTGGGTCAAGCCGCCACAACGTTGCAGCAGCTTCCTGCTCTTATCAAGGATACTCTAGCC 778
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 730 TTGGGACAAGCTGCCACAACGTTGCAGCAGCTTCCTGCTCTTATCAAGGATACTCTAGCC 789
Query 779 AGTGGTCTGAGAATTCCCCTAAGTGGTTCCTTTGAAAGATTCTTCATGATATCTTATCTA 838
|||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||
Sbjct 790 AGTGGTCTGAGAATTCCCCTTAGTGGATCCTTTGAAAGATTTTTCATGATATCTTATCTA 849
Query 839 GACGAAGAGATTCTTATAGTTAGAGATACTGAAGGAGTGCCTGAAGTTCTAACGAGGATT 898
|| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 850 GATGAAGAGATTCTTATAGTAAGAGATACCGAAGGAGTGCCTGAAGTTCTAACGAGGATA 909
Query 899 GAAACACCATCATCTACCGTTGTAGAAACTCTTGAATACGATAGTTAGATGTTACTAGCC 958
|||||||||||||| ||||||||||||||| | ||||| ||||||||||||| |||||||
Sbjct 910 GAAACACCATCATCGACCGTTGTAGAAACTATCGAATATGATAGTTAGATGTGACTAGCC 969
Query 959 ATTGTTCTTGTTCT 972
||||||||||||||
Sbjct 970 ATTGTTCTTGTTCT 983
Score = 87.9 bits (47), Expect = 2e-16
Identities = 51/53 (96%), Gaps = 0/53 (0%)
Strand=Plus/Plus
Query 972 TACAAGAACCAACCACCAAGTTGGTGTCTGTAAATGTTTGAAGTTAATAACTT 1024
||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 1011 TACAAGAACCAACCACCAAGTTGGTGTCTGTAAATGTATGACGTTAATAACTT 1063
Score = 86.1 bits (46), Expect = 7e-16
Identities = 62/69 (90%), Gaps = 3/69 (4%)
Strand=Plus/Plus
Query 1025 AATCTTCTCAACTTTTCCAAGTACTTGCAGATTCTCTGTTTTGAT-AT-TCA-TAAACTC 1081
||||||||||| || |||||||||||||||||||||||||||||| || | | |||||||
Sbjct 1117 AATCTTCTCAAGTTATCCAAGTACTTGCAGATTCTCTGTTTTGATCATCTTAATAAACTC 1176
Query 1082 TTTCTTTGT 1090
||||| |||
Sbjct 1177 TTTCTATGT 1185
> AT3G58010.1 | Symbols: PGL34 | plastoglobulin 34kD | chr3:21475805-21477569
REVERSE LENGTH=1177
Length=1177
Score = 601 bits (325), Expect = 5e-171
Identities = 611/747 (82%), Gaps = 28/747 (4%)
Strand=Plus/Plus
Query 172 CCGGAGAA-GAGTTTTAAGAGCAATGGTGCAGGAAACAGTTTTA-GGATCTCCTTCGGTT 229
|||||||| || | | ||||| ||||| || || | ||| | |||| |||||| |||
Sbjct 247 CCGGAGAATGA-TATGCAGAGCTATGGTTCAAGACTCGGTTCAAGGGAT-TCCTTCAGTT 304
Query 230 TACGCCAGAGAAATGGAGCGCCTTTCTGCTAAGGAATCGC-TAGTTCTCGCTTTGAAGGA 288
|||||||||||||||||||| || |||||||||||||||| || ||||||| || || ||
Sbjct 305 TACGCCAGAGAAATGGAGCGTCTCTCTGCTAAGGAATCGCTTA-TTCTCGCCTTCAATGA 363
Query 289 TGCTGGAGGCTTTGAGGCTTTAGTTACAGGGAA-AACAACTAATATGCAAAGGATCGATG 347
||||||||| ||||||||| ||||||||||||| | | ||| ||||||||| ||| ||||
Sbjct 364 TGCTGGAGGATTTGAGGCTCTAGTTACAGGGAAGATC-ACTGATATGCAAAAGATTGATG 422
Query 348 TGAATGAGAGAATTACTAGTCTAGAGCGGCTTAACCCGACTCCTAGACCAACCACGTCTC 407
| ||||| || || || | ||| ||||||||||| || ||||||||||||||||||||||
Sbjct 423 TCAATGAAAGGATAACGAATCTTGAGCGGCTTAATCCAACTCCTAGACCAACCACGTCTC 482
Query 408 CTTGT-TTCGAAGGCAGATGGAATTTTGAGTGGTTTGGATCTGGA-AGTCCTGGTT-TAC 464
||| | || ||||| ||||||| |||||||||||||||| | | | |||||||| | |
Sbjct 483 CTTATCTT-GAAGGTAGATGGAGTTTTGAGTGGTTTGGA-GTCAACACTCCTGGTTCT-C 539
Query 465 TCGCTGCTCGAGTTATATTCGAGAGATTTCCTTCAACATTGGCGAATTTAT-CAAGAATG 523
| |||| ||| ||||| |||||||| || ||||| ||||||| || | ||| ||| |||
Sbjct 540 TTGCTGTTCGGGTTATGTTCGAGAGGTTCCCTTCGACATTGGTGAGTCTATCCAA-TATG 598
Query 524 GAGATACTGATCAAGGATGCTAACGCAAAGGCGACGGCAAATATCAAACTTTTGAACTCG 583
|| ||| | || || ||| |||| ||||||| || ||||| |||||||| | ||||||
Sbjct 599 GAAATATTCATTAAAGATAATAACACAAAGGCAACAGCAAACATCAAACTCCTAAACTCG 658
Query 584 ATAGAAAGCAAAATCATTCTGTCATCAAAATTGACTGTCG-AGGGACCTTTGA-GATTGA 641
||||||| |||||||| |||||||| |||||||| | | |||| ||||| | || |||
Sbjct 659 ATAGAAAACAAAATCACCCTGTCATCGAAATTGACAATAGAAGGG-CCTTTAAGGA-TGA 716
Query 642 AAGAAGAATATGTTGA-AGGTA-TGCTCGAATCCCCAACAGTCATTGAAGAAGCAGTTCC 699
||||||| ||| || | ||| | ||||||| || ||||| || |||||||||||||| ||
Sbjct 717 AAGAAGAGTAT-TT-AGAGGGATTGCTCGAGTCGCCAACGGTTATTGAAGAAGCAGTACC 774
Query 700 TGAACAGCTTAA-AGGTGCATTGGGTCAAGCCGCCACAACGTTGCAGCAGCTTCCTGCTC 758
||| || | ||| |||| |||||||||||| | || |||||||| |||||||||| |
Sbjct 775 TGACCAAC-TAAGAGGTTTATTGGGTCAAGCTACTACCACGTTGCAACAGCTTCCTGAAC 833
Query 759 TTATCAAGGATACTCTAGCCAGTGGTCTGAGAATTCCCCTAAGTGGTTCCTT-TGAAAGA 817
|||||| ||||||||||||| |||||| ||||| ||||| |||| ||| |||||
Sbjct 834 CTATCAAAGATACTCTAGCCAATGGTCTAAGAATCCCCCTTGGTGG-AACTTACCAAAGA 892
Query 818 TTCTTCATGATATCTTATCTAGACGAAGAGATTCTTATAGTTAGAGATACTGAAGGAGTG 877
|||||||||||||||||||||||||| ||||||||||| || |||||||| | |||||||
Sbjct 893 TTCTTCATGATATCTTATCTAGACGACGAGATTCTTATTGTAAGAGATACCGCAGGAGTG 952
Query 878 CCTGAAGTTCTAACGAGGATTGAAACA 904
|||||||||||||||||| | ||||||
Sbjct 953 CCTGAAGTTCTAACGAGGGTGGAAACA 979
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53413379880
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5