BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483306
Length=917
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42180.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1005 0.0
> AT2G42180.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G57950.1);
Has 35333 Blast hits to 34131 proteins in 2444 species: Archae
- 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants
- 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI
BLink). | chr2:17580917-17581956 REVERSE LENGTH=1040
Length=1040
Score = 1005 bits (544), Expect = 0.0
Identities = 683/747 (91%), Gaps = 21/747 (3%)
Strand=Plus/Plus
Query 121 ATAAGTAAATAACAGGAACTTGTAGGGCTATAAACGTCAACAAAGTCCCTTATAAATAGT 180
|||||||||||||||| ||||||| || |||||||||||| |||||||||||||||||||
Sbjct 199 ATAAGTAAATAACAGGGACTTGTAAGGTTATAAACGTCAAGAAAGTCCCTTATAAATAGT 258
Query 181 CGAGATTGTCGATTAATGCACATAAAAGAAGAGTGTGAGATAGCCTCTAGAGTTGTCGTT 240
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 259 CGAGATTGTCGATTAATGCACATAAAAGAAGAGTGTGAGATAGACTCTAGAGTTGTCGTT 318
Query 241 GAGTCATGCAGCTCAAAAGGTCATCATCTTCTTCCCACTCCATGAATCTCAAAACCCTAT 300
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 319 GAGTAATGCAGCTCAAAAGGTCATCATCTTCTTCCCACTCCACGAATCTCAAAACCCTAT 378
Query 301 TCCTAAATCTCATCACACACTCTCTTTACCGTCTTTTACGGTCTCTCTCACGAGCCAAAT 360
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 379 TCATAAATCTCATCACACACTCTCTTTACCGTCTTTTACGGTCTCTCTCAAGAGCCAGAT 438
Query 361 CCGTTCTTATAGAGATTTCTAAACACAACAAGAAGAGGTTATTCATGATGATGTTTTACA 420
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 439 CCGTTCTGATAGAGATTTCGAAACACAACAAGAAGAGGTTATTCATGATGATGTTTTACA 498
Query 421 CAACAAAGTCATCCATGAACCACCACAACATCTTCTTTGGATCCTCCCATGTCGTCGTTC 480
| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 499 CGACAAAGTCATCCATGAACCAACACAACATCTTCTTTGGATCCTCCCATGTCGTTGTTC 558
Query 481 CTGTCACTAAACCTTTCCCTTTCTCCGTTCATGGTCATG---AAGATGAGGATAATCTTG 537
| |||||||||||||||||||||||| || ||||||||| ||||||||||||||||||
Sbjct 559 CCGTCACTAAACCTTTCCCTTTCTCCCTTGATGGTCATGTTGAAGATGAGGATAATCTTG 618
Query 538 AATCTCAATACCTCGAGTGGCTAGAAGAAAAAGTTGATGAGAATAATAACATTAATGATG 597
| |||||||||||| ||||||| ||||| | |||||||||||||||||||||||||||||
Sbjct 619 AGTCTCAATACCTCCAGTGGCTCGAAGAGAGAGTTGATGAGAATAATAACATTAATGATG 678
Query 598 ATCA---TC------AGAG---TGTTGGTGATGAAGATATTGATCGTTTGGCAGATATAT 645
|||| | |||| |||||||||||| |||||||||||| ||||||||| ||
Sbjct 679 ATCAGAGTGTTGGGGAGAGAGATGTTGGTGATGATGATATTGATCGTCTGGCAGATAAAT 738
Query 646 TCATCGCGAGGTGTCATGAGAAGTTTTTGCTGGAGAAGGTTGAATCTTACAGGAGATTCC 705
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 739 TCATCGCGAGGTGTCATGAGAAGTTCTTGCTGGAGAAGGTTGAATCTTACAGGAGATTCC 798
Query 706 AAGATATGTTGGCTAGGAGTTTGTGAGAATTGAGCATTAGAGCGACGACGACAAAGAGTT 765
||||||||||||| ||||||||||||||| ||| || ||||| ||||| | ||| ||||
Sbjct 799 AAGATATGTTGGCGAGGAGTTTGTGAGAACCGAGAATCAGAGCCACGAC-A-AAA-AGTT 855
Query 766 TATTTTATATT-TTTTAAAGTCAAT-ATAATTCTTGTTTGATGGATGTCTTGATTACTAA 823
|||||||| || |||| |||||||| ||| ||||||||||||||| |||| |||| |||
Sbjct 856 TATTTTATTTTGTTTTTAAGTCAATTATA-TTCTTGTTTGATGGAAATCTTAATTAATAA 914
Query 824 AATGCGAGAGAATGAAGCCTATATACA 850
|||| |||||| ||||||||||| |||
Sbjct 915 AATGAGAGAGACTGAAGCCTATACACA 941
Score = 196 bits (106), Expect = 2e-49
Identities = 117/122 (96%), Gaps = 2/122 (2%)
Strand=Plus/Plus
Query 1 ATAACTGAGATGAATAATTAGGGAGGGGGCAGTTGCAAGTTGTTTAAAATTTGAAACCAA 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 27 ATAACTGAGATGAATAATTAGGGAGGGGGCAGTTGCAAGTTGTTTAAAAATTGAAACCAA 86
Query 61 CTCTGTATCACGATTGTGTCATCTCTAGATT-CTCCTCACGCGTACCTTGTTCAACTTTG 119
||| ||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||
Sbjct 87 CTC-GTATCACGATTGTGTCATCTCTAGATTTCGCCTCACGCGTACCTTGTTCAATTTTG 145
Query 120 AA 121
||
Sbjct 146 AA 147
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44808859124
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5