BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483321
Length=1435
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42300.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 2039 0.0
AT3G57800.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 246 4e-64
> AT2G42300.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:17621156-17624841 FORWARD
LENGTH=1576
Length=1576
Score = 2039 bits (1104), Expect = 0.0
Identities = 1271/1350 (94%), Gaps = 17/1350 (1%)
Strand=Plus/Plus
Query 100 TCAAAATACTCGCCAACTGACAAACATTAAACTCC--TTCTCCTCTCTCGATTTAAAGAA 157
||||||||||| |||||||||||| |||||| ||| || | |||||||||||| || ||
Sbjct 229 TCAAAATACTCCCCAACTGACAAAAATTAAATTCCTTTTTTTCTCTCTCGATTTTAA-AA 287
Query 158 GCT-TAACTCGAACCAGTTGATCAAGTCGGTCGGTTCTGGGTT-TCTCTGAA--T--TTC 211
||| ||| |||| ||||||||||||||||||||||| |||| || ||||| | |||
Sbjct 288 GCTCTAAAAGGAACGAGTTGATCAAGTCGGTCGGTTCT-GGTTATCACTGAATTTCATTC 346
Query 212 AACTCGGTTTATTCCGGTTTAAGTGTGATTTTCCCGGCTTATGGATCTAACCCAAGGCTT 271
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||
Sbjct 347 AACTCGGTTTATTCCGGTTTAAGTGTGATTTTCCCGGCTAATGGATCTGACCCAAGGTTT 406
Query 272 CGGAGCTAGATCCGGCGTTGTTGGGCCGGTGACCGGACTTGAATCTCTCAATTTTAGCGA 331
| ||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||
Sbjct 407 CAGAGCTAGATCCGGCGTTGTTGGGCCGGTGGCCGGACTAGAATCTCTCAATTTCAGCGA 466
Query 332 CGAATTTCGGCACTTAGTGACGACGATGCCTCCGGAGAATACCGGCGGCTCTTTCACGGC 391
|||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||
Sbjct 467 CGAATTTCGGCACTTAGTGACGACGATGCCTCCGGAGACTACTGGCGGCTCCTTCACGGC 526
Query 392 TTTGCTCGAGATGCCTGTGACTCAAGCCATGGAGCTTCTCCATTTCACTGATTCATCGTC 451
||| |||||||||||||||||||| ||||||||||||||||||||| | |||||||||||
Sbjct 527 TTTACTCGAGATGCCTGTGACTCAGGCCATGGAGCTTCTCCATTTCCCAGATTCATCGTC 586
Query 452 TTCTCAGGCGAGAACCGTTACC---GGAGATATTGCTCCTACTACTCTTCACCCTTTCGG 508
||||||||| |||||||||||| || |||||| ||||||| |||||||||||||||||
Sbjct 587 TTCTCAGGCCAGAACCGTTACCAGTGGTGATATTTCTCCTACCACTCTTCACCCTTTCGG 646
Query 509 GGCATTGACTTTTCCTTCTAACTCGCTTCTCTTGGACCGCGCCGCTCGTTTCTCGGTGAT 568
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 647 GGCTTTGACTTTTCCTTCTAACTCGCTTCTCTTGGACCGCGCCGCTCGTTTCTCGGTGAT 706
Query 569 TGCTACTGAGCAAAACTGTAATATCTCCGGCGAGACTGCGAACTCTTTACCTTCCAATTC 628
|||||| ||||||||| ||||| | |||||||||||||| |||||||||||||| ||| |
Sbjct 707 TGCTACAGAGCAAAACGGTAATTTTTCCGGCGAGACTGCTAACTCTTTACCTTCTAATCC 766
Query 629 CGGCGCCAATCTGGACAGAGTCAAGGCTGAGCCTGCTGAGACCGATTCAATGGTGGAGAA 688
|||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 767 CGGCGCGAATCTGGACAGAGTCAAAGCCGAGCCTGCTGAGACCGATTCAATGGTGGAGAA 826
Query 689 TCAGAACCAGAACTACTCTTCTGGAAAGAGGAAAGATCGCGAGAAGAAGGTCAAAAGCTC 748
||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 827 TCAGAACCAGAGCTACTCTTCTGGAAAAAGGAAAGAACGCGAGAAGAAGGTCAAAAGCTC 886
Query 749 GACGAAGAAGACCAAGAGCTCCGCAGAGTCAGACAAGTTGCCATATGTTCATGTCAGAGC 808
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 887 GACGAAGAAGAACAAGAGCTCCGTGGAGTCAGACAAGTTGCCATATGTTCATGTCAGAGC 946
Query 809 TCGTCGTGGTCAAGCTACTGATAACCATAGCTTAGCAGAGAGAGCAAGAAGGGAGAAGAT 868
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 947 TCGTCGTGGTCAAGCTACTGATAACCATAGCTTAGCAGAGAGAGCAAGAAGGGAGAAGAT 1006
Query 869 AAACGCACGAATGAAGCTGCTACAGGAACTGGTCCCAGGCTGTGATAAGATTCAGGGCAC 928
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1007 AAACGCACGAATGAAGCTGCTACAGGAACTGGTCCCAGGCTGTGATAAGATTCAGGGCAC 1066
Query 929 AGCATTGGTTCTGGATGAAATCATAAACCATGTGCAGTCTTTACAGCGTCAAGTGGAGAT 988
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1067 TGCATTGGTTCTGGATGAAATCATTAACCATGTGCAAACTTTACAGCGTCAAGTGGAGAT 1126
Query 989 GCTATCTATGAGACTTGCTGCAGTAAACCCCAGAGTCGAGTTCAATCTAGACAGCATACT 1048
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 1127 GCTATCTATGAGACTTGCTGCAGTAAACCCCAGAATCGACTTCAATCTAGACAGCATACT 1186
Query 1049 GGCTTCAGAAAACGGCTCTCTTATGGATGGTAGCTTCAATGGAGAGTCTTATCATCAGCT 1108
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1187 GGCTTCAGAGAACGGCTCTCTTATGGATGGTAGCTTCAATGCAGAGTCTTATCATCAGCT 1246
Query 1109 GCAACAGTGGCCTTTCGATGGCTACCACCAGCCGGAATGGGGAAGAGAAGAAGATCAACA 1168
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1247 GCAACAATGGCCTTTCGACGGCTACCACCAGCCGGAATGGGGAAGAGAAGAAGATCATCA 1306
Query 1169 TCAAGCCAATTTCTCAATGGGTTCAGCTACTTTACACCCAAATCAGGTGAAAATGGAGCT 1228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1307 TCAAGCCAATTTCTCAATGGGTTCAGCTACTTTACACCCAAATCAGGTGAAAATGGAGCT 1366
Query 1229 CTAAGTTGGAAACAGTTTGACATGCTTATGTATATATATAAGAGTTATATAT--CTGCTA 1286
||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||
Sbjct 1367 CTAAGTTGGAAACAGTTTGACATGCTTATGTGTATATATAAGAGTTATATATATCTACTA 1426
Query 1287 AAGTTTCGATTGTTGAATTAGAGGGAGAAAATGGTTATGATTGTTTCAGGTCTTTGTTCA 1346
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1427 AAGTTTCGATTGTTGAATTAGAGGTAGAAAATGGTTATGATTGTTTCAGGTCTTTGTTCA 1486
Query 1347 TGGCCTT-CTATATTTACTAGATTCCTCAATGTAGAATTCAGAATGTCTCAATTGTGTTT 1405
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1487 TGGCCTTTCTATATTTACTAGATTCCTCAATGTAGAATTCAGAATGTCTAAATTGCGTTT 1546
Query 1406 CCCTTGAGAGAAAGTATATGAAGATTTGAT 1435
|||||||||||| |||||||||||||||||
Sbjct 1547 CCCTTGAGAGAA-GTATATGAAGATTTGAT 1575
Score = 100 bits (54), Expect = 3e-20
Identities = 54/54 (100%), Gaps = 0/54 (0%)
Strand=Plus/Plus
Query 1 GGCTTTATTAACAGACGCACTCCAAAGCTAACGTTGCTTTCTTCCCACTCCAAA 54
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GGCTTTATTAACAGACGCACTCCAAAGCTAACGTTGCTTTCTTCCCACTCCAAA 54
> AT3G57800.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr3:21407789-21411612 REVERSE
LENGTH=1817
Length=1817
Score = 246 bits (133), Expect = 4e-64
Identities = 186/211 (88%), Gaps = 6/211 (3%)
Strand=Plus/Plus
Query 710 TGGAAAGAGGAAAGATCGCGAGAAGAA-GGTCAAAAGCTCGACGAAGAAGACCAAGAGCT 768
||| |||||||||||| ||| ||||| ||| ||||||||||||||||||| ||| ||||
Sbjct 810 TGGGAAGAGGAAAGATTTCGAAAAGAAGGGT-AAAAGCTCGACGAAGAAGAACAAAAGCT 868
Query 769 CCGCAGAGTCA-GACAAGTTGCCATATGTTCATGTCAGAGCTCGTCGTGGTCAAGCTACT 827
| | |||| | || ||| ||||||||||||| || |||||||||||||||||||| ||
Sbjct 869 CTGAAGAG-AACGAGAAGCTGCCATATGTTCACGTTAGAGCTCGTCGTGGTCAAGCAACC 927
Query 828 GATAACCATAGCTTAGCAGAGA-GAGCAAGAAGGGAGAAGATAAACGCACGAATGAAGCT 886
|||| ||||||||||||||| | |||||||||| ||||||||||| ||||||||||||||
Sbjct 928 GATAGCCATAGCTTAGCAGA-ACGAGCAAGAAGAGAGAAGATAAATGCACGAATGAAGCT 986
Query 887 GCTACAGGAACTGGTCCCAGGCTGTGATAAG 917
| |||||||||||||||||||||||||||||
Sbjct 987 GTTACAGGAACTGGTCCCAGGCTGTGATAAG 1017
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70732567905
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5