BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483324
Length=2376
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42320.1 | Symbols: | nucleolar protein gar2-related | chr2... 3147 0.0
> AT2G42320.1 | Symbols: | nucleolar protein gar2-related | chr2:17627962-17630797
FORWARD LENGTH=2290
Length=2290
Score = 3147 bits (1704), Expect = 0.0
Identities = 1994/2126 (94%), Gaps = 52/2126 (2%)
Strand=Plus/Plus
Query 247 ATTGAAAGAGATTCATGATGAAGGCAAGAACAACTAACAA---TGTTCAGTCGAAGAGAT 303
||||| |||| |||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 124 ATTGAGAGAGTTTCACGATGAAGGCAAGAACAACTAACAATGTTGTTCAGTCGAAGAGAT 183
Query 304 TTACAAAGAGTGTAAGAAAAGATCAAAAGCTGCAGAAGACGAATAGCCAGaaaaaaaCAG 363
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 184 CTACTAAGAGTGTAAGAAAAGATCAAAAGCTGCAGAAGACGAATAGCCAGAAAAAAACAG 243
Query 364 AACAAGAGAAGCACAAGGACTTGGATGCTAAGGAAGAGTCTAGTAATATCTCTACAGTAG 423
|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 244 AACAGGAGAAGCACAAGGACTTGGATACTAAGGAAGAGTCTAGTAATATCTCTACAGTAG 303
Query 424 CAAGTGATTCTACCACACAATCAGAT-CC-C----TC-T----GA-GGT---T-TACGAG 467
|||||||||| |||| |||||||||| || | || | || ||| | | ||
Sbjct 304 CAAGTGATTCAACCATACAATCAGATCCCTCTGAGTCTTACGAGACGGTAGATGTTCGTT 363
Query 468 AC--GG-T-A-G---AT-GT-TCGTT-ACT-TG--GATGATGATCAAGGATCAGATTCTA 513
|| || | | | || || || || || || |||| | |||||| |||||||||||
Sbjct 364 ACTTGGATGATGATAATGGTGTCATTGCCTCTGCAGATGCTCATCAAGAATCAGATTCTA 423
Query 514 GCAGAGTTGTGGACAAAACGGAGAAGGAGCATAATTTAAGTGGATCCCTTTGTGATTTGG 573
|||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 424 GCAGCGTTGTTGACAAAACGGAGAAGGAGCATAATTTAAGTGGATCCATTTGTGATTTGG 483
Query 574 AGAAAGATGTTGCTGA-AAATGTATGTAAAGTTGCTAACATTGATAAAGAAATCGATACA 632
|||||||||||| ||| || | |||||||| ||||||||||||||||| || | |
Sbjct 484 AGAAAGATGTTGATGAGCAA-GAATGTAAAGATGCTAACATTGATAAAG--AT-G---C- 535
Query 633 GATGTTCGTGAAGGTATCAATGCCGATGTTTGGGAAGATGCTTCGAATGGTGCTCTTAGT 692
|||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 536 -----TCGTGAAGGTATCAGTGCTGATGTTTGGGAAGATGCTTCGAATGGTGCTCTTAGT 590
Query 693 GCTGGAAGTGAGAATGAGGCAGCTGATGTAACAGAGAATAATGGTGGCAACTTTGACGAT 752
||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||| |||
Sbjct 591 GCTGGCAGTGAGAATGAAGCAGCTGATGTAACAGAGAATAATGGTGGGAACTTTGAAGAT 650
Query 753 GGATCTTCGGAAGAGAAGATTGAGCGTCTAGAGACGAGAATCGAGAAACTTGAAGAGGAG 812
||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||
Sbjct 651 GGATCTTCGGAAGAGAAGATTGAACGTTTAGAGACGAGGATCGAGAAACTTGAAGAGGAG 710
Query 813 CTTAGAGAAGTTGCTGCACTCGAGATTTCGCTCTATTCTGTTGTGCCGGACCATTGTAGC 872
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 CTTAGAGAAGTTGCTGCACTCGAGATTTCGCTCTATTCTGTTGTGCCGGACCATTGTAGC 770
Query 873 TCTGCTCACAAGCTTCATACGCCTGCTCGGCGTATTTCTAGAATCTACATCCATGCCTGT 932
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 TCTGCTCACAAGCTTCATACGCCTGCTCGGCGTATTTCTAGAATCTACATCCATGCCTGT 830
Query 933 AAGCATTTTACTCAGGGGAAGCGTGCTACGATCGCTAGAAACTCTGTTTCTGGTCTTGTT 992
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 831 AAGCATTTTACTCAGGGAAAGCGTGCTACGATCGCTAGAAACTCTGTATCTGGTCTTGTT 890
Query 993 TTGGTTGCCAAATCTTGTGGGAATGATGTTTCGAGGTTGACCTTCTGGTTATCAAACATC 1052
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 891 TTGGTTGCCAAATCTTGTGGGAATGATGTTTCGAGGTTGACCTTCTGGTTATCAAACATC 950
Query 1053 ATAGCTTTGAGGCAGATAATTTCGCAAGCATTTGGTAGGTCTCGCATCACACAGATCTCT 1112
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 951 ATAGCTTTGAGGCAGATAATTTCGCAAGCATTTGGTAGGTCTCGCATCACACAAATCTCT 1010
Query 1113 GAACCAAATGAGAGTGGAAATGGTAATTCAGGGAAGAAAACAAACCTGAGATGGAAGAAT 1172
||||||||||||||||| ||| || |||||||||||||||| ||||||||||||||||||
Sbjct 1011 GAACCAAATGAGAGTGGTAATAGTGATTCAGGGAAGAAAACGAACCTGAGATGGAAGAAT 1070
Query 1173 GGTTTCCAACAGCTTTTGGAGGATTGGCAAGAAACTGAAACATTTACTACTGCACTTGAG 1232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1071 GGTTTCCAACAGCTTTTGGAGGATTGGCAAGAAACTGAAACATTTACTACTGCACTTGAG 1130
Query 1233 AAAATCGAATTTTGGGTATTCTCTAGAATCGTGGAGTCTGTTTGGTGGCAGGTCTTTACT 1292
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1131 AAAATCGAGTTTTGGGTATTCTCTAGAATAGTGGAGTCTGTTTGGTGGCAGGTCTTTACT 1190
Query 1293 CCTCATATGCAATCCCCTGAAAACGACTCATCAGCCAGTAAATCAAATGGGAAACTGATG 1352
|||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 1191 CCTCATATGCAATCACCTGAAGACGACTCATCAGCAAGTAAATCAAATGGGAAACTGATG 1250
Query 1353 GGACCTTCCTTGGGTGATCAGAACCAAGGAACCTTTTCAATTAGCCTATGGAAAAATGCT 1412
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1251 GGACCTTCCTTGGGTGATCAGAACCAAGGAACCTTTTCGATAAGCCTATGGAAAAATGCT 1310
Query 1413 TTCCGAGATGCTCTGCAACGGCTTTGTCCTATGCGAGGCGCGGGACACGAATGCGGTTGC 1472
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 1311 TTCCGAGATGCTCTGCAACGGATTTGTCCTATGCGAGGAGCGGGACACGAATGCGGTTGC 1370
Query 1473 TTACCTGTATTGGCTAGAATGGTTATGGACAAGTGTATCGGTAGATTCGATGTAGCCATG 1532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1371 TTACCTGTATTGGCTAGAATGGTTATGGACAAGTGTATCGGTAGATTCGATGTAGCCATG 1430
Query 1533 TTCAATGCTATTCTCCGCGAGTCAGAACATCAGATTCCAACTGATCCCGTCTCTGATCCT 1592
|| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1431 TTTAATGCTATTCTCCGCGAATCAGAACATCAGATTCCAACTGATCCTGTCTCTGATCCT 1490
Query 1593 ATTCTTGATTCCAAAGTGT-TGCCTATTCCTGCTGGAAATTTAAGCTTTGGATCAGGAGC 1651
||||||||||||||||| | ||||||||||||||||| | ||||||||||||||||| ||
Sbjct 1491 ATTCTTGATTCCAAAGT-TCTGCCTATTCCTGCTGGAGACTTAAGCTTTGGATCAGGGGC 1549
Query 1652 ACAACTTAAAAACGCGATTGGCAATTGGTCTAGATGCCTCACTGAAATGTTTGGCATGAA 1711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1550 ACAACTTAAAAACGCGATTGGCAATTGGTCTAGATGCCTCACTGAAATGTTTGGCATGAA 1609
Query 1712 CTCTGATGATTCTTCGGCGAAAGAAAAACGAAACAGTGAAGATGATCATGTAGAAAGTAA 1771
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1610 CTCTGATGATTCTTCAGCGAAAGAAAAACGAAACAGTGAAGATGATCATGTAGAAAGTAA 1669
Query 1772 AGCCTTTGTTTTACTAAATGAACTAAGTGATCTTCTTATGCTCCCAAAAGATATGCTGAT 1831
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1670 AGCCTTTGTTTTACTAAATGAACTTAGTGATCTTCTTATGCTCCCAAAAGACATGCTGAT 1729
Query 1832 GGAAATATCCATTAGAGAAGAGATATGCCCATCAATTACTCTTCCACTCATCAAAAGAAT 1891
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 1730 GGAAATATCCATTAGAGAAGAGATATGCCCATCAATCAGTCTTCCACTCATCAAAAGAAT 1789
Query 1892 ACTCTGCAACTTCACTCCTGATGAGTTCTGTCCAGATCATGTACCTGGAGCTGTCCTAGA 1951
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1790 ACTCTGCAACTTCACTCCTGATGAGTTCTGTCCAGATCAAGTACCCGGAGCTGTCCTAGA 1849
Query 1952 AGAGCTCAATGCTTCAGAGAGCATTGGTGATAGGAAGCTATCAGAAGCAAGCTTCCCTTA 2011
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1850 AGAGCTTAATGCTGCAGAGAGCATTGGTGATAGGAAGCTATCAGAAGCAAGCTTCCCTTA 1909
Query 2012 TGCAGCTTCCTCGGTTACTTACATGCCTCCATCGACCATGGATGTAGCAGAAAAAGTTGC 2071
||||||||| || ||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1910 TGCAGCTTCTTCTGTTTCTTACATGCCTCCATCGACCATGGATATAGCAGAAAAAGTTGC 1969
Query 2072 AGAGGCTGCAGGAAAATTGTCAAGGAATGTGTCTATGATACAGAGAAAAGGGTACACAAG 2131
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1970 AGAGGCTTCAGCAAAATTGTCAAGGAATGTGTCTATGATACAGAGAAAAGGGTACACAAG 2029
Query 2132 CGACGAGGAGCTTGAGGAACTGGACTCTCCTCTTACATCCATTGTCGACAAAGCGAGTGA 2191
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2030 CGACGAGGAGCTTGAGGAACTGGACTCTCCTCTTACATCCATTGTTGACAAAGCGAGTGA 2089
Query 2192 CTTCACTGGTTCAGCGACTTCGAATGCAAGATACAAGCTTCTTCGAGAAGTGTGGGTTTA 2251
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 2090 CTTCACTGGTTCAGCGACTTCAAATGCAAGATACAAGCTTCTTCGACAAGTGTGGGTTTA 2149
Query 2252 GTTGAGGAACCAAGTCAAACTGTAAGTAGTATGTATGTG-TTGGTTGGGTATTATTGCAA 2310
||| ||||||||||| |||||||||||||||||||||| ||||| | | ||||||||
Sbjct 2150 GTTT-GGAACCAAGTCGAACTGTAAGTAGTATGTATGTGGTTGGT-GTTTGGTATTGCAA 2207
Query 2311 AGAGAAGTTGGTTGACTTATaaaaaa 2336
|||||| |||||||||||||||||||
Sbjct 2208 AGAGAATTTGGTTGACTTATAAAAAA 2233
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117971280750
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5