BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483326
Length=2077
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42330.1 | Symbols: | GC-rich sequence DNA-binding factor-l... 3057 0.0
> AT2G42330.1 | Symbols: | GC-rich sequence DNA-binding factor-like
protein with Tuftelin interacting domain | chr2:17630729-17634299
REVERSE LENGTH=2786
Length=2786
Score = 3057 bits (1655), Expect = 0.0
Identities = 1950/2090 (93%), Gaps = 30/2090 (1%)
Strand=Plus/Plus
Query 1 GAGGAGAAGAAGATTGTTGAGGTCACTGTTAGTGAGAATCATGGTGATGGAAGGAGGAAT 60
||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 591 GAGAAGAAGAAGAGTGTTGTGGTCACTGTTAGTGAGAATCATGGTGATGGAAGGAGGGAT 650
Query 61 CTTTGGAAAAAGAAGAATGTGAGGAAGGAAGTTTATATTACTGCAGAGGAGTTT-TTGGG 119
||||||||||||||||||||||||||||||||||||||||| || || |||||| || ||
Sbjct 651 CTTTGGAAAAAGAAGAATGTGAGGAAGGAAGTTTATATTACCGCGGAAGAGTTTCTT-GG 709
Query 120 GAAGAAACAGGAAGAGGGTTTTGGTTGTGGTCAGAC-CATTATTGATAAGCGAGGACCAC 178
||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||
Sbjct 710 GAAGAAACAGGAAGAGGGTTTTGGTTGTGATCAG-CTTATTATTGATAAGCGAGGACCAC 768
Query 179 AAGGTCGAGTTGTTAAAAGTTT-ACGAAATTTATACGCAGAGGAGAAAGCAAGAGATGCC 237
||| |||||||||||| ||||| | ||||||||||||||||||||||||||| ||||||
Sbjct 769 AAGATCGAGTTGTTAACAGTTTGA-GAAATTTATACGCAGAGGAGAAAGCAACAGATGCT 827
Query 238 AATGTTCCACAGCCAGAGTTACAGCATAACTTGAGGTTTATTGTTGAGTCAGTCGAGCAT 297
||||||| ||||||||||||||||||||||||| ||||||||||| | ||| ||||||||
Sbjct 828 AATGTTCAACAGCCAGAGTTACAGCATAACTTGCGGTTTATTGTTAAATCACTCGAGCAT 887
Query 298 GGAATTCTGAAGATTGATAAGGATTTGAGGAACGAGAAAGAATTAGCCTTGAGCTTGCAG 357
|| |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 888 GGGATTCTGAAGACTGATAAGGATTTGAGGAACGAGAAAGGATTAGCCTTGAGCTTGCAG 947
Query 358 CAAGAGAAGGAGAAATTTAAAATGGGGGAAAAGAAACAAAAAATGCTGTTTGACAACTTG 417
|||||||||||||||||||| ||||||| ||||||||| |||| ||||||||||||||||
Sbjct 948 CAAGAGAAGGAGAAATTTAAGATGGGGGTAAAGAAACAGAAAACGCTGTTTGACAACTTG 1007
Query 418 GGATATATTGCAGAGGAAATCGATCGAATTGAGATGGAGATTGCTTCTGGGAATTTAACA 477
|||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 1008 GGATATGTTGCAGAGGAAATCGATCGAATTGAGGTGGAGATTGCGTCTGGGAATTTAACC 1067
Query 478 TTGGATTCACTTGCCAATCATTTCAAGGACCTGCGTTCAAGCTATCCTGATGACTATAAG 537
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 1068 TTGGATTCACTTGCCAATCGTTTCAAGGACTTGCGTTCAAGCTATCCTGATGACTATAAG 1127
Query 538 AGTTGTAAATTGTCATGCATTGCTTGCTCACTCGCCTTGCCTCTCTTTATCAGGATGTTT 597
||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 1128 TGTTGTAACTTGTCATGCATTGCTTCCTCACTGGCCTTGCCTCTCTTTATCAGGATGTTT 1187
Query 598 CAGGGTTGGGACCCTCTGAGTGATGCAGAGCATGGTATCGAGGCTATTTCTTCCTGGAAA 657
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1188 CAGGGTTGGGACCCTCTTAGTGATGCAGAGCATGGTATCGAGGCTATATCTTCCTGGAAA 1247
Query 658 ATGCTGCTGGAAGTTGAGGACAATCAAAGTATCTCGACGCCGTT-TAGCCAACTTGTCTC 716
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1248 ATGCTGCTGGAAGTTGAGGACAATCAAAGTATCTCGACGCC-TTATAGCCAACTTGTCTC 1306
Query 717 AGAGGTAATTTTACCTGCTGTGCGAGTATCAGGCATCAATACTTGGGAACCTAGAGATCC 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1307 AGAGGTAATTTTACCTGCTGTGCGAGTATCAGGCATCAATACTTGGGAACCTAGAGATCC 1366
Query 777 GGAGCCAATGCTGAGATTTG-TAGAGACATGGGAGAAAATGCTACCCTCACTTATTTTCG 835
||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1367 TGAGCCAATGTTGAGA-TTGCTAGAGACATGGGAGAAAATGCTACCCTCACTTATTTTCG 1425
Query 836 AAACGATTTTGACCACAGTAGTGCTGCCAAAATTGTCAA-CGGCTATTGAATCTTGGGAA 894
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1426 AAACGATTTTGACCACAGTAGTGCTGCCAAAATTGTCAATC-GCTATTGAATCTTGGGAA 1484
Query 895 CCACGTTTGGAAACGGTTCCCATCCA-TGTTTGGGTGCATCCGTGGCTGCCAGTGCTTGG 953
|||||||||||||| ||||||||||| | ||||||| ||||||||||||||||| |||||
Sbjct 1485 CCACGTTTGGAAACTGTTCCCATCCACT-TTTGGGTACATCCGTGGCTGCCAGTACTTGG 1543
Query 954 TCAGAAGTTGGAAAGTGCGTATCAGATTATTCGGATGAAATTCGGTAACCTTCTCGATGC 1013
||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||
Sbjct 1544 TCAGAAGTTGGAAAGTGCGTATCAGATCATTCGAATGAAATTCGGTAACCTTCTTGATGC 1603
Query 1014 TTGGCATCCTAGTGATGTGTCTGTCCACACTATCCTTTCCCCTTGGAAGACTGTTTTTGA 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1604 TTGGCATCCTAGTGATGTGTCTGTCCACACTATCCTTTCCCCTTGGAAGACTGTTTTTGA 1663
Query 1074 TGCTGCAAGCTGGGAGCAGCTTATGCGTCGTTACATAGTTCCTAAATTACAGCTGGCTTT 1133
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 1664 TGCTGCAAGCTGGGAGCAGCTTATGCGTCGTTACATAGTTCCTAAATTACAGGTGGCCTT 1723
Query 1134 GCAAGAGTTCCAGATAAACCCAGCAGACCAGAATTTAGACCAGTTCAATTTGGTTATGGG 1193
||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||
Sbjct 1724 GCAAGAGTTCCAGATAAACCCAGCAGATCAGAACTTAGACGAGTTCAATTTGGTTATGGG 1783
Query 1194 GTGGGTATCTTCAGTACCCATACATCTAATGACTGATCTGATGGAGAGATTCTTTTTCCC 1253
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 1784 GTGGGTATCTTCAGTACCCATTCATCTAATGACTGATTTGATGGAGAGATTCTTTTTCCC 1843
Query 1254 CAAGTGGCTGGATGTTTTATATCACTGGCTGTGTTCAGAACCAAAGTTCGATGAGATAAT 1313
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1844 CAAGTGGCTGGATGTTTTATATCACTGGTTGTGTTCAGAACCAAAGTTCGATGAGATAAT 1903
Query 1314 GAAGTGGTATTTGGGTTGGAAAGGATCATTCCCACATGAGCTTTCCGCAAACAGGGGGAT 1373
||| |||| |||||||||||||||| |||||||||| |||||||| ||||||||| ||||
Sbjct 1904 GAAATGGTTTTTGGGTTGGAAAGGAACATTCCCACAGGAGCTTTCTGCAAACAGGAGGAT 1963
Query 1374 CGAAATCCAGTTCAAGCGTGGTCTAGATATGGCGAGGGAAGCAGTTGAACGGATGGAAAT 1433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1964 CGAAATCCAGTTCAAGCGTGGTCTAGATATGGCGAGGGAAGCAGTTGAACGGATGGAAAT 2023
Query 1434 GTCTCAGCCAGGGGCAAGGGAGAACATAAGCTACCACAAGGCACAAGAGCAGAGGGAGTC 1493
||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||
Sbjct 2024 GTCTCAGCCAGGGGCAAGGGAAAACATAAGTTACCACAAGGCACAAGAGCAGAGGCAGTC 2083
Query 1494 TGAGGGTCGTGCTAAGGTCCAGGCTCAGGTGGATGACCCCGAGGAGCTGAGTTTTAAAGA 1553
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 2084 TGAGGGTCGTGCTAAGGTTCAGGCTCAGGTGGATGACCCGGAGGAGCTGAGTTTTAAAGA 2143
Query 1554 AGCAGTAGAATTATTTGCGCAGGAGAAGGAGTTGCTGTTGAAACCTAAACCTCATAGAAT 1613
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2144 AGCAGTAGAATTGTTTGCGCAGGAGAAGGAGTTGCTGTTGAAACCTAAACCTCATAGAAT 2203
Query 1614 GCACAACGGACTTCAGATCTATAGGTTCGGGAACGTGAGCGTGTTACTAGACTCAGCAAA 1673
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2204 GCACAACGGTCTTCAGATCTATAGGTTCGGGAACGTGAGTGTGTTACTAGACTCAGCAAA 2263
Query 1674 TTCTAAGTTGTTGGCCCAGGATGCAGGAGGTTGGTTTCCTGTTGATCTTGACAGCTTGCT 1733
|||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||
Sbjct 2264 CTCTAAGTTGTTGGCCCAGGAAGAAGGACGTTGGTTTCCTGTTGATCTTGACAGCTTGCT 2323
Query 1734 TAAGATGCACTATAGTGCCGTTGCTGGAAAACAATGAAACATTACCCCTAGGAAGGAAGT 1793
|||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||
Sbjct 2324 TAAGATGCACTATAGTGCTGTTACTGGAAAACAATGAAACATTACCCCTAATAAGGAAGT 2383
Query 1794 AAGAAG-AAGAATGGATAAATGTTTTGGAAGCATCGACATTTCCCTGC-AGATGGACCTG 1851
|||||| ||| ||| |||||||| ||||| |||||||||||||||||| | | || |||
Sbjct 2384 AAGAAGGAAGTATGTATAAATGTATTGGA-GCATCGACATTTCCCTGCTA-ACGGGTCTG 2441
Query 1852 AGATAGAGAAGTCAATATGTTTCAACTT--TTAGAGATTTTACCTGTTTTTTCTAGT-GG 1908
|| ||||||||||| ||||||| | || || || || ||| || ||| || ||
Sbjct 2442 AGTTAGAGAAGTCAGTATGTTTTTG-TGGGTT-GATATATTGGCTGGATTATCT-GTTGG 2498
Query 1909 TTGCATCTGAGCAAACCTTGTGGATATATATTGAGCTTTACTATTTTGTTTCCCTGCGGT 1968
|||||||||| ||||||||||||| ||| | ||||||||||||||||||||||||| |
Sbjct 2499 TTGCATCTGAACAAACCTTGTGGAGATAG-T-GAGCTTTACTATTTTGTTTCCCTGCTCT 2556
Query 1969 GGCACGTTACAATGCCTCTTGTATCTCTCGTTCTTTATCT-ATAAATAAACAATATAAGT 2027
||| || ||||| ||||||||| |||||||| ||||| | | |||||||||| ||||||
Sbjct 2557 GGCTTGTAACAATACCTCTTGTACCTCTCGTTTTTTAT-TGA-AAATAAACAA-ATAAGT 2613
Query 2028 TGGTCGAATTTAACATCTTCAAGCCCATGATTGAGATTGTAAAGAGCTCT 2077
||||| |||| |||||||||||| |||||||||||||||||||| ||||
Sbjct 2614 TGGTCAAATTCGACATCTTCAAGCTCATGATTGAGATTGTAAAGAACTCT 2663
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102961317795
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5