BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483328
Length=811
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42350.1 | Symbols: | RING/U-box superfamily protein | chr2... 1094 0.0
> AT2G42350.1 | Symbols: | RING/U-box superfamily protein | chr2:17639152-17639998
FORWARD LENGTH=847
Length=847
Score = 1094 bits (592), Expect = 0.0
Identities = 730/792 (92%), Gaps = 27/792 (3%)
Strand=Plus/Plus
Query 37 CTTGTTCTACCGAAACAAAAACGCTTCATCATGAGCTCTGACAACAAAACAAATGATGAT 96
||||||||||| |||| |||||||||||||||||||||| |||||||||| |||||||
Sbjct 65 CTTGTTCTACCAAAAC-AAAACGCTTCATCATGAGCTCTAACAACAAAAC---TGATGAT 120
Query 97 T-C--CGACCGTTCGTTT-TGGCAAAACTCGACTTCTTACGATGCCAGCAGCAAGATCAT 152
| | ||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 121 TCCGACGACCGTTC-TTTCTGGCAAAACTCGACTTCTTACGATGCCAGCAGCAAGATTTT 179
Query 153 GCTCGTCACCACCGTTTCCTTCTC-AGTTATTATCCTCATCGTCTTCGTTTATTATCTCT 211
||||||||||||||||||||||| | |||||||| ||||||| ||||||||||||||||
Sbjct 180 CCTCGTCACCACCGTTTCCTTCTCTA-TTATTATCATCATCGTGTTCGTTTATTATCTCT 238
Query 212 ACGCAAAATTCGTTCTCCGCCGCCGTAGATCCA-CCTTCCAAGACCTCTCGTTCTCCGTC 270
|||||||||||||||| || |||||||| || |||||||||||||||| ||||| |||
Sbjct 239 ACGCAAAATTCGTTCT---CCACCGTAGAT-CAGCCTTCCAAGACCTCTCCTTCTCTGTC 294
Query 271 GTTTCTCATCCGCCCAAACGTGGCCTCGATACTCTAGTCATCGCTTCTCTCCCAACGTTC 330
|||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 295 GTTTCTCAGCCGCCAAAACGTGGCCTCGATTCTCTAGTCATCGCTTCTCTCCCAACGTTC 354
Query 331 GTGGTTGGAGTCAAGAATGACGTGGCGGGTACGGAATGTGCGGTTTGTCTAAGCTTGTTG 390
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 355 GTGGTTGGAATCAAGAATGACGTGGCGGGTACGGAATGTGCGGTTTGTCTAAGCTTATTG 414
Query 391 GAGGAGAAAGATAATGCGAGGATGTTACCAAACTGCAAGCACGTGTTCCATGTGACTTGC 450
||||||||||||||||| ||||||||||| |||||||| ||||||||||| ||| |||||
Sbjct 415 GAGGAGAAAGATAATGCAAGGATGTTACCGAACTGCAAACACGTGTTCCACGTGTCTTGC 474
Query 451 GTTGACACGTGGCTCACCACGCAGTCCACTTGTCCCGTTTGTCGAACTGAAGCCGAGCCA 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 GTTGACACGTGGCTCACCACGCAGTCCACTTGTCCCGTTTGTCGAACTGAAGCCGAGCCA 534
Query 511 AGTC--C-AAGGCTTGAGCCTGAGCCTAGGGAAGGGCCCGTTGGCGACGTTGCACCGCCG 567
|||| | |||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 535 AGTCATCCAAGGCTTGAGCCTGAGCCTAGGGAAGGGCCAGTTGGCGACTTTGCACCGCCG 594
Query 568 TTAGATTTCGTGGGGGTAGATAACAAAACCGGCGGGTCATCGGTTTTGAGGTTAGACTCG 627
|||||||||| |||||| ||||||||||||||||| |||||||||| |||||||||||||
Sbjct 595 TTAGATTTCGCGGGGGTTGATAACAAAACCGGCGGATCATCGGTTTCGAGGTTAGACTCG 654
Query 628 TTTCGAAGGATTTTGACAAGGGAAAGATCTTCGAACAGGCTCGATCATTCTCGCGTTGAC 687
|| || |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 655 TTCCGGAGGATTTTGACAAGGGAAAGATCTTCGAACAGGCGGGATCATTCTCGCGTTGAC 714
Query 688 CAAGATCGTGAATTGGATATAGAAAGACAGTGAAATCA-TATA--GTATATACACACATA 744
|||||||||||||||||||| ||||||||||||| ||| |||| |||||||||||||||
Sbjct 715 CAAGATCGTGAATTGGATATTGAAAGACAGTGAATTCAGTATATAGTATATACACACATA 774
Query 745 CGCCGGTTTAAAAAT-----GTATAAACACACATGCATCCATAATTAATCCTTAATTCAT 799
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 775 CGCCGGTTAAAAAAAAAAAAGTATAAACACACATGCATCCATAATTAATCCTTAATTCAT 834
Query 800 GAACAATAATAC 811
|||| |||||||
Sbjct 835 GAACCATAATAC 846
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39484039542
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5