BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483334
Length=1783
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42400.1 | Symbols: VOZ2, ATVOZ2 | vascular plant one zinc f... 2687 0.0
> AT2G42400.1 | Symbols: VOZ2, ATVOZ2 | vascular plant one zinc
finger protein 2 | chr2:17654232-17656839 REVERSE LENGTH=1834
Length=1834
Score = 2687 bits (1455), Expect = 0.0
Identities = 1678/1780 (94%), Gaps = 37/1780 (2%)
Strand=Plus/Plus
Query 18 TCTTGTTCCTCATCGCGATAGCTCCTGTGTCTTCTTCGTCTCCATC------CGAAGCTC 71
|||| ||| ||||||||||| |||| |||||||||||||||||||| |||||||
Sbjct 73 TCTTCTTCTTCATCGCGATATCTCCGGTGTCTTCTTCGTCTCCATCAGAAGAAGAAGCTC 132
Query 72 TCTTTATCAATCTAAACCGAAAATGAATAGCCAGAGATCGGAGGAAGgagagagagagaC 131
||| |||| ||| | | || || || | ||||||||||||||||||||||||||| ||
Sbjct 133 TCTGTATCCATCCATATCG--AA--AA-A-CCAGAGATCGGAGGAAGGAGAGAGAGATAC 186
Query 132 CAATCGCTGGTTGCTTTGGTTTTGAGGGTTTAGAGGAGATGTCAAACCACCCGAAGATCA 191
||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 187 CAATCTCT-GTTGCTTTGGTTTTAAGGGTTTAGAGGAGATGTCAAACCACCCGAAGATCA 245
Query 192 CATGTGTATCTTCGGCGCATCAGAATGTGGAGGAGAAGCTAAGGGAACTTCAGGAGAGGT 251
| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 246 C------A---TCGGCGCATCAGAATGTGGAGGAGAAGCTAAGGGAACTTCAGGAGAGGT 296
Query 252 TCTGTCATCTTCAGGCTGCTAGGAAAGAAGGGCGCCATGGTGACCTTGCACTTTTGGAAG 311
||||||||||||| |||||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct 297 TCTGTCATCTTCAAGCTGCTAGGAAAGAAGGGCGGCATGGTGACCTTGCGCTTTTAGAAG 356
Query 312 CCCAAATCTCTCAGAATATTCGTGAGTGGCAAGCTGAACTCACTGCTCCTTCTCCTGAAT 371
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 357 CCCAAATCTCTCAGAATATTCGGGAGTGGCAAGCTGAACTCACTGCTCCTTCTCCTGAAT 416
Query 372 CTTCTCT-TCTGGGTGAAGGTATTAGCCAATTCCTTGAGGAGTTTGCTCCTCTGTTGAAA 430
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 CTTCTCTGT-TGGGTGAAGGTATTAGCCAATTCCTTGAGGAGTTTGCTCCTCTGTTGAAA 475
Query 431 TTAGACGAGGAGGATGATGCAACTAGTACGCTAAAGGAACACGCTGCACCAAAGCCTCAG 490
||||||||||||||||||||||||||||||||||| ||||| |||| | |||||||| |
Sbjct 476 TTAGACGAGGAGGATGATGCAACTAGTACGCTAAAAGAACATGCTGGAGCAAAGCCTGAT 535
Query 491 CCTGACGGTTTCGCTCAAAGCTTGTGCCCTCCTGAATGGACATCTGAGAATTTTAGTCAA 550
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 CCTGAGGGTTTTTCTCAAAGCTTGTGCCCTCCTGAATGGACATCTGAGAATTTTAGTCAA 595
Query 551 AGTCCTTTCAATGGAAATTTCTCCTGCGGCTTTGAGGATGCTCTTAATAGCACAGAAACA 610
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 AGTCCTTTCAACGGAAATTTCTCCTGCGGCTTTGAGGATGCTCTTAATAGCACAGAAACA 655
Query 611 CATGGCGAGCAACTCCATTATGCATTTGAAGGGTTTGATCCAAGCGTAAACACCGCTCCT 670
|||||| ||||||||||||||| || ||||||||||||||||||| ||||| ||||||||
Sbjct 656 CATGGCCAGCAACTCCATTATGGATATGAAGGGTTTGATCCAAGCATAAACTCCGCTCCT 715
Query 671 GATTTCCATGACCAAAAACTCAACAGCAACCTGGATATAACTTCTCAGTATGATTCTATT 730
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||
Sbjct 716 GATTTCCATGACCAAAAACTCAGCAGCAACTTGGATATAACTTCTCAGTATGATTATATT 775
Query 731 TTCTCCGAAGTGCGTCAGGAACTCTATAACAGCCCTTCCATTAAGCTTGATTCTTCTGAA 790
||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 776 TTCTCCGAAGTGCGTCAGGAACTAGATAACAGCCCTTCCACTAAGCTTGATTCTTCTGAA 835
Query 791 AAGATTGACAACTTTGCTGAATTTACTACTCCATCAAGTGTCCGAGTGCCTCCATCTGCT 850
||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 836 GAGATTGACAACTTTGCTGAATTTTCTACTCCATCAAGTGTCCGTGTGCCTCCATCTGCT 895
Query 851 TTTCTAGGACCTAAGTGTGCACTATGGGATTGCACAAGGCCTGCTCAGGGATCTGAGTGG 910
||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 896 TTTCTGGGACCTAAGTGTGCACTATGGGATTGCACAAGGCCTGCTCAGGGCTCCGAGTGG 955
Query 911 TACCTGGATTACTGCAGTAACTACCATGGGACTCTAGCTCTGAATGAAGATTCGCCTGGC 970
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 TACCTGGATTACTGCAGTAACTACCATGGGACTCTAGCTCTGAATGAAGATTCGCCTGGC 1015
Query 971 ACAGCACCTGTCTTAAGGCCGGGGGGCATCAGTTTGAAAGATAATCTATTGATTGATGCT 1030
||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1016 ACAGCACCTGTATTGAGGCCAGGGGGCATCAGTTTGAAAGATAATCTATTGATTGATGCT 1075
Query 1031 CTTCGTGCAAAGACTCAGGGTAAGAATGTTGGCATCCCAGTGTGTGAAGGAGCTGTTAAC 1090
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1076 CTTCGTGCAAAGACTCAGGGTAAGAATGTTGGGATCCCAGTGTGTGAAGGAGCTGTTAAC 1135
Query 1091 ACAAAATGCCCATGGAACGCAGCAGAGCTATTTCATCTTGAACTGGTTGAAGGCGAAACG 1150
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 ACAAAATGCCCATGGAACGCAGCAGAGCTATTTCATCTTGAACTGGTTGAAGGCGAAACA 1195
Query 1151 ATTAGAGAGTGGCTCTTCTTTGACAAACCTAGAAGAGCATATGATAGCGGAAACCGAAAG 1210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 ATTAGAGAGTGGCTCTTCTTTGACAAACCTAGAAGAGCATATGATAGCGGAAACCGAAAG 1255
Query 1211 CAAAGATCACTTCCAGATTACAGTGGACGAGGTTGGCATGAATCAAGAAAAGTACCGATG 1270
||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||
Sbjct 1256 CAAAGATCACTTCCAGATTACAGTGGAAGAGGTTGGCATGAATCAAGAAAACAACTGATG 1315
Query 1271 AAGGAACAAGAAGGCCAGAAGAGATCATACTATATGGATCCACAACCTCCAGGTCCCTTT 1330
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1316 AAGGAACAAGAAGGCCAGAAGAGATCTTACTATATGGATCCACAACCTCCAGGTCCCTTT 1375
Query 1331 GAGTGGCATCTCTTTGAATACCAAATCAATGAATCTGACGCATGTGCGTTATATCGGCTA 1390
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1376 GAGTGGCATCTCTTTGAATACCAAATCAATGAATCTGACGCATGTGCGTTATATCGCCTA 1435
Query 1391 GAACTTAAAGTAGGAAATGGAAAGAAGAGTCCTAAGGGAAAGATTTCAAAAGACCCTCTA 1450
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1436 GAACTTAAAGTAGGAAATGGAAAGAAGAGTCCTAAGGGAAAGATTTCAAAAGACCCTCTG 1495
Query 1451 GCTGATCTGCAGAAGAAGATGGGACAGTTTAAAGTGGCGTCAGACAAACCCTCTCCTCCA 1510
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1496 GCTGATCTGCAGAAGAAGATGGGACAGTTTAAAGTGGCTTCAGACAAACCCTCTCCTCCA 1555
Query 1511 ACCAAAGGTCGTAAGGAGTGAAGTTAGCTATTGGCAATCTAACTCAAGACTCCTGCAACA 1570
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1556 ACCAAAGGTCGTAAGGAGTGAAGTTAGCTATTGGTAATCTAACTCAAGACTCCTGCAACA 1615
Query 1571 ATAGCTCCAAGTTGTCTCCAGCATTCTACAAAAGAGCCATCGTCATCTCTGtttt-tttt 1629
|||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||
Sbjct 1616 ATAGCTCCAAGTTGTCTCCAGCATTCTACAAAAGAGCCATCGCCACCTCTGTTTTCTTTT 1675
Query 1630 t------CTTTCTGACTGTATTATGACGAGATAGGATCATCTTTGATGTGTTGTGTTAAT 1683
| ||||||||||||||||||| ||||||||||| | || ||||||||||||||||
Sbjct 1676 TTTTTTTCTTTCTGACTGTATTATGAAGAGATAGGATC-T-TT-GATGTGTTGTGTTAAT 1732
Query 1684 ATGGACAAGTCTGGTCTTTGCCCTTTTTCTTGATAGAATC-TGAGATGGGttttgtaaat 1742
|||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||
Sbjct 1733 ATGGACAAGTCTGGTCTTTGCCCTTTTTCTTGATAGAATCGT-AGATGGGTTT-GTAAAT 1790
Query 1743 ttttgcattttatttttCTGCTCTAAAACCATAAGGATTT 1782
||||||||||||||||||| || |||||||| ||||||||
Sbjct 1791 TTTTGCATTTTATTTTTCTCCTTTAAAACCACAAGGATTT 1830
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88202357565
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5