BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483344
Length=1848
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42510.2 | Symbols: | FUNCTIONS IN: molecular_function unkn... 804 0.0
AT1G54380.1 | Symbols: | spliceosome protein-related | chr1:20... 320 3e-86
> AT2G42510.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: spliceosome assembly, nuclear mRNA splicing,
via spliceosome; LOCATED IN: cellular_component unknown;
CONTAINS InterPro DOMAIN/s: Survival motor neuron interacting
protein 1 (InterPro:IPR007022); BEST Arabidopsis thaliana
protein match is: spliceosome protein-related (TAIR:AT1G54380.1);
Has 297 Blast hits to 270 proteins in 80 species: Archae
- 2; Bacteria - 35; Metazoa - 62; Fungi - 11; Plants -
64; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink).
| chr2:17701662-17704618 FORWARD LENGTH=1986
Length=1986
Score = 804 bits (435), Expect = 0.0
Identities = 613/689 (89%), Gaps = 52/689 (8%)
Strand=Plus/Plus
Query 1169 AAGACTATGTTGTAAAAGCGAAGAACACTGAAGATAATGACGATTACAATAGCATTTTGA 1228
|||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||
Sbjct 1313 AAGACTATGTTGTAAAAGAGGAGAAAACTGAAGATAATGACGATTACAATAGCATTTTGA 1372
Query 1229 GGCCTGCGTTTGCCGTGGATGGAGAACCTGATTTCGATTCTGGACCACCAGAAGATGGGC 1288
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1373 GGCCTGCGTTTGCTGTGGATGGAGAACCTGATTTCGATTCTGGACCACCAGAAGACGGGA 1432
Query 1289 TTGAATATTTAAGACGATTGTTTCCACAATTTAGGTGGGAGGCTAAGCGAATTCCAAAAG 1348
||||||||||||||||| | | | |||||||||||||||||||||||||| |
Sbjct 1433 TTGAATATTTAAGACGA--G--T---C-----AGGTGGGAGGCTAAGCGAATTCCAAATG 1480
Query 1349 TAAAAGTAGCCAAGGTAAATGGAAGCAAGTACAGAGAGAAAGAGCAAAGTGTTTACATGC 1408
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 TAAAAGTAGCCAAGGTAAGTGGAAGCAAGTACAGAGAGAAAGAGCAAAGTGTTTACATG- 1539
Query 1409 CACAAATTTCTGAAATCCCCAAATGCCCAGAGCACCTGCTGCCGGTGAAGGAATGGGAGG 1468
| | | | |||| | |||||||||||||| |||||||||||||||||||
Sbjct 1540 C-C--A---C--AAAT-------T-CCCAGAGCACCTGCAACCGGTGAAGGAATGGGAGG 1583
Query 1469 AGTCGTTGCTTTCCGACTTCTCACACATTCGGCTGGTATTCCTTTCTTCTAACTTGCATA 1528
| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1584 ACTCGTTGCTTTCCGACTTCTCACACATTCGTCTGGTATTCCTTTCTTCCAACTTGCATA 1643
Query 1529 C-TACCAGTGTTTCTCTTAATGGACAAGATATGAATGGAAAGATACAAGGAATGGACTCA 1587
| || ||||||||||||| | || | | | ||||||||||||||||||||||
Sbjct 1644 CTTATCAGTGTTTCTCTT-A---AC--G----G-A--CAAAGATACAAGGAATGGACTCA 1690
Query 1588 GTGACGCGGGTCTCAAAGCTGAGAAAGCGGATATGTTTGGTTGAGAAGGAGAGCGGTTTA 1647
||||| ||||| |||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 1691 GTGACACGGGTATCAAAGCTGAGAAAGCGGATATGTTTGG-TGAAAAGGAGAGCGGTTTA 1749
Query 1648 GAGAGTAGTGACTGCAAATGGGTAGTAGCATTATGTGCATCAGTGGACACTCCTTTGGAT 1707
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1750 GAGAGTAGCGACTGCAAATGGGTAGTAGCATTATGTGCATCAGTGGACACTCCTCCGGAT 1809
Query 1708 GCTGATACTAGTGCTTGTCTCAGAGCTCTTTTGAGAAAGTGTGCGAGTCTTCGTGCGTTA 1767
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1810 GCTGATACTAGTGCTTGTCTCAGAGCTCTTGTGAGAAAGTGTGCGAGTCTTCGTGCGTTA 1869
Query 1768 GAGGTTG-A-------AGATGAACAAGTTATCATTATGGCTAATATGCTCATCACCATCG 1819
||||||| | |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1870 GAGGTTGGAGTCTTGGAGATGAACAAGTTATCATTATGGCAAATATGCTCATCACCATCG 1929
Query 1820 CAGGCAGATACTTTGGCCAAATGGAATGA 1848
|||||||||| ||||||||||||||||||
Sbjct 1930 CAGGCAGATATTTTGGCCAAATGGAATGA 1958
Score = 614 bits (332), Expect = 1e-174
Identities = 391/418 (94%), Gaps = 9/418 (2%)
Strand=Plus/Plus
Query 671 AGAAGAAGGATGATGTGGACACGCTCGCTAGGGCTTCTGATATCCATAAGATTGAAAAGA 730
|||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 782 AGAAGAAGAATGATGGGGACACGCTCGCTAGGGCTTCTGATATCCATAAGATCGAAAAGA 841
Query 731 ATGGAAATGGGTCTAAAGATCAGCGTGAGAAGGTGGAAAGAGTGAGAGTTAAGGATAATG 790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 842 ATGGAAATGGGTCTAAAGATCAGCGTGAGAAGGTGGAAAGAGTGAGAGTTAAGGATAATG 901
Query 791 CTTTTGTTGGAAGATCTGTGAATATCGATTTGGTTGATGATACTGCGTTGTTTGATGTTG 850
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 902 CATTTGTTGGAAGATCTGTGAATATTGATTTGGTTGATGATACTGCGTTGTTTGATGTTG 961
Query 851 TTCCTTTCTACAAGAAAGGTAAAGATCATCCTAAGAGACCAG-----G-A-AC--TGATA 901
||||||||||||||||||||||||||||| |||||||||||| | | || |||||
Sbjct 962 TTCCTTTCTACAAGAAAGGTAAAGATCATTCTAAGAGACCAGTAACTGCACACACTGATA 1021
Query 902 AGTATGAACCAAAAAAGCATAAGAAAGTTGGTGGAGAGAAACCTATTGATAAGGGAAATG 961
|| ||| ||||| |||||||||||||||||| | ||||||||| ||||||||||||||||
Sbjct 1022 AGGATGCACCAAGAAAGCATAAGAAAGTTGGAGTAGAGAAACCGATTGATAAGGGAAATG 1081
Query 962 CTTCTAGCCTTGTTGAAAGGAGTGCATCAACTAAAGTTTCTGACTTTCGTAACCGTGGAG 1021
|||||||| |||||||||||| ||| ||||| ||||||||||||||||||||| ||||||
Sbjct 1082 CTTCTAGCATTGTTGAAAGGAATGCGTCAACCAAAGTTTCTGACTTTCGTAACAGTGGAG 1141
Query 1022 AAATGAATGGGAAGCAGTTGCGGATAATGTATTCTAGGAACCAAATGGAGTCGATGAG 1079
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1142 AAATGAATGGGAAGCAGTTGCGGATAATGTACTCTAGGAACCAAATGGAGTCGATGAG 1199
Score = 442 bits (239), Expect = 6e-123
Identities = 285/306 (93%), Gaps = 8/306 (3%)
Strand=Plus/Plus
Query 38 TTGGGTCGGAGAAAACTTCGATTTCTCGGGATGAATTTGCAGCAGACTCGCTAAAGATCG 97
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 56 TTGGGTCGGGGAAAACTTCGATTTCTCGGGATGAATTTGCAGAAGACTCGCTAAAGATCG 115
Query 98 TTTCTTTGCCGCCGGTAGAGAACGACGACTCTGTTGAAGAGATGATAAGCCCAAAGAAGC 157
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 116 TTTCTTTGCCGCCGGTTGAGAACGACGACTCTGTTGAAGAGATGATAAGCCCAAAGAAGC 175
Query 158 AAGTAAAGTCTTCGCCTTTTACTTCTGTTTGTGAGAACGATGGAGAAACCATCCATTCGG 217
|||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||
Sbjct 176 AAGTAAAGTCTTCGCCTTTTACTTCTGTTTTTGAGAAGGATGGAGAAATCATCCATTCGG 235
Query 218 ATTCTATTGA-AGTTTCTTTCTCCGAAACGAGTCCTGAAGAAACCGTGGCGATGAATGTG 276
|||||||||| | |||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 236 ATTCTATTGACA-TTTCTTTCTCCGAAACGACTCTTGAAGAAACCGTGGCGATGAATGTG 294
Query 277 GAGTGTCCTGGAGTAGT------CTCTGTACCTGAAACTAGTTCAACGTTTCTTGAAGAG 330
||||||||||||||||| |||||||||||||| | |||| ||| |||||||||||
Sbjct 295 GAGTGTCCTGGAGTAGTAGTAGTCTCTGTACCTGAAAATGGTTCCACGATTCTTGAAGAG 354
Query 331 AACAAG 336
|| |||
Sbjct 355 AATAAG 360
Score = 176 bits (95), Expect = 7e-43
Identities = 134/152 (88%), Gaps = 6/152 (4%)
Strand=Plus/Plus
Query 333 CAAGATAGAGGATGTTGTTGAGACTGATGGGTGCGTCGTTTCTATCTCTGATGTGAAAGA 392
||||||| |||||||||||||||||||||||| |||||| |||||||||||| |||||||
Sbjct 432 CAAGATAAAGGATGTTGTTGAGACTGATGGGTTCGTCGTATCTATCTCTGATATGAAAGA 491
Query 393 AAGTTTGAACTCGGAGAAGAAGGGACAAGATTCTGATGTTCAGAGTACTATGGAGAA-GA 451
|||||||||||||||||||||||||||||||||||||| |||||| | | ||||| ||
Sbjct 492 AAGTTTGAACTCGGAGAAGAAGGGACAAGATTCTGATGGTCAGAGGATTGTGGAGGCTGA 551
Query 452 GAAGAT--TGTTG---GCTGAAATCGAAGATG 478
|||||| | ||| |||||||||| |||||
Sbjct 552 GAAGATAATATTGTTCGCTGAAATCGGAGATG 583
Score = 137 bits (74), Expect = 3e-31
Identities = 88/95 (93%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 538 TGCGTCGTTTCTATCTCTAATATGAAAGAAAGTTTGAACTCTCAGAAGAAGGGACAAGAT 597
||||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 694 TGCGTCGGTTCTATCTCTGATATGAAAGAAATTTTGAACTCTCAGAAGAAGGGACAAGAT 753
Query 598 TCTGATGCTCAGATACTTTTGGAGGCTGAGAAGAA 632
||||||| ||| ||||||| |||| ||||||||||
Sbjct 754 TCTGATGTTCAAATACTTTGGGAGACTGAGAAGAA 788
Score = 111 bits (60), Expect = 2e-23
Identities = 84/95 (88%), Gaps = 3/95 (3%)
Strand=Plus/Plus
Query 364 TGCGTCGTTTCTATCTCTGATGTGAAAGAAAGTTTGAACTCGGAGAAGAAGGGACAAGAT 423
||||||| ||||||||||||| ||||||||| ||||||||| |||||||||||||||||
Sbjct 694 TGCGTCGGTTCTATCTCTGATATGAAAGAAATTTTGAACTCTCAGAAGAAGGGACAAGAT 753
Query 424 TCTGATGTTCAGAGTACTATGG-AGAA-GAGAAGA 456
||||||||||| | |||| ||| ||| |||||||
Sbjct 754 TCTGATGTTCAAA-TACTTTGGGAGACTGAGAAGA 787
> AT1G54380.1 | Symbols: | spliceosome protein-related | chr1:20297965-20300908
REVERSE LENGTH=1879
Length=1879
Score = 320 bits (173), Expect = 3e-86
Identities = 248/283 (88%), Gaps = 9/283 (3%)
Strand=Plus/Plus
Query 1570 ATACAAGGAATGGACTCAGTGACGCGGGTCTCAAAGCTGAGAAAGCGGATATGTTTGGTT 1629
||||||||||||||||| ||||||||||| |||||||||| |||||| ||||||||||||
Sbjct 1267 ATACAAGGAATGGACTCGGTGACGCGGGTATCAAAGCTGAAAAAGCGTATATGTTTGGTT 1326
Query 1630 GAGAAGGAGAGCGGTTTAGAGAGTAGTGACTGCAAATGGGTAGTAGCATTATGTGCATCA 1689
|||||||||||||||||| ||||||| || ||||||||||||||||| || |||||||||
Sbjct 1327 GAGAAGGAGAGCGGTTTACAGAGTAGCGATTGCAAATGGGTAGTAGCGTTGTGTGCATCA 1386
Query 1690 GTGGACACTCCTTTGGATGCTGATACTAGTGCTTGTCTCAGAGCTCTTTTGAGAAAGTGT 1749
|||| |||||||||||||| |||||| |||||||||| || | |||| |||| ||||||
Sbjct 1387 TTGGAGACTCCTTTGGATGCCGATACTTGTGCTTGTCTAAGGGGTCTTCTGAGGAAGTGT 1446
Query 1750 GCGAGTCTTCGTGC-G-----T--T-AGAGGTTGAAGATGAACAAGTTATCATTATGGCT 1800
|| ||| ||||||| | | | |||||||| ||||||| ||||||||| |||||
Sbjct 1447 GCTAGTGTTCGTGCAGAGACATCATTAGAGGTTGGAGATGAAGAAGTTATCACCATGGCA 1506
Query 1801 AATATGCTCATCACCATCGCAGGCAGATACTTTGGCCAAATGG 1843
|||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1507 AATATGCTCATCACCATCGCCGGCAGATACTTTGGCCAAATGG 1549
Score = 291 bits (157), Expect = 2e-77
Identities = 252/296 (85%), Gaps = 14/296 (5%)
Strand=Plus/Plus
Query 1193 ACACTGAAGATAATGACGATTACAATAGCATTTTGAGGCCTGCGTTTGCCGTGGATGGAG 1252
||||||| |||||||| |||||||||||||||||||| |||||||||| || |||||||
Sbjct 833 ACACTGACGATAATGATGATTACAATAGCATTTTGAGACCTGCGTTTGAAGTAGATGGAG 892
Query 1253 AACCTGA-TTTCGATTCTGGACCACCAGAAGATGGGCTTGAATATTTAAGACGATTGTTT 1311
||||||| ||| | | |||||||||||||||||||||||||||||||||||||| ||
Sbjct 893 AACCTGATTTTAG-TACTGGACCACCAGAAGATGGGCTTGAATATTTAAGACGA--GT-- 947
Query 1312 CCACAATTTAGGTGGGAGGCTAAGCGAATTCCAAAAGTAAAAGTAGCCAAGGTAAATGGA 1371
| | |||||||||||||| ||||||| || |||| |||||||||| || ||| |
Sbjct 948 C-A-------GGTGGGAGGCTAAGGGAATTCCGAATGTAAGAGTAGCCAAGATAGATGAA 999
Query 1372 AGCAAGTACAGAGAGAAAGAGCAAAGTGTTTACATGCCACAAATTTCTGAAATCCCCAAA 1431
|||| ||||| | ||||||||||||||||||| ||||||| |||| ||||||||||||||
Sbjct 1000 AGCACGTACATAAAGAAAGAGCAAAGTGTTTATATGCCACTAATTCCTGAAATCCCCAAA 1059
Query 1432 TGCCCAGAGCACCTGCTGCCGGTGAAGGAATGGGAGGAGTCGTTGCTTTCCGACTT 1487
|| |||||| ||||| | || |||||||||||||||| |||||||||| |||||
Sbjct 1060 TGTCCAGAGTACCTGTTACCCATGAAGGAATGGGAGGACTCGTTGCTTTTGGACTT 1115
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91465392990
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5