BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483346
Length=530
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42530.1 | Symbols: COR15B | cold regulated 15b | chr2:17709... 712 0.0
AT2G42540.2 | Symbols: COR15A, COR15 | cold-regulated 15a | chr... 440 6e-123
> AT2G42530.1 | Symbols: COR15B | cold regulated 15b | chr2:17709036-17709945
REVERSE LENGTH=653
Length=653
Score = 712 bits (385), Expect = 0.0
Identities = 421/439 (96%), Gaps = 0/439 (0%)
Strand=Plus/Plus
Query 1 CTCATGGCGATGTCTTTATCAGGTGCTGTTCTCAGTGGCATGGGTTCTTCTTTCCACAAC 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 70 CTCATGGCGATGTCTTTATCAGGAGCTGTTCTCAGTGGCATGGGTTCTTCTTTCCACAAC 129
Query 61 GTAGGAGCCAAGCAGAGCAGCGTTGGTGCCGTCGGAGTTGGCCGGAAGAGTGAGTTCGTC 120
|||||||| |||||||| | |||||| ||||| |||||||||||||||||||| |||||
Sbjct 130 GTAGGAGCAAAGCAGAGTGGTGTTGGTACCGTCAGAGTTGGCCGGAAGAGTGAGCTCGTC 189
Query 121 GTCGTTGCTCAGCGCAAGAAGTCGTTGATATACGCCGTTAAAGGTGACGGCAACATCCTC 180
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 190 GTCGTTGCTCAGCGCAAGAAGTCGTTGATATACGCCGTTAAAAGTGACGGCAACATCCTC 249
Query 181 GATGACCTCAACGAAGCCACAAAGAAAGCTTCTGATTTCGTGACGGATAAGACAAAGGAG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 250 GATGACCTCAACGAAGCCACAAAGAAAGCTTCTGATTTCGTGACGGATAAGACGAAGGAG 309
Query 241 GCGTTGGCGGATGGTGAGAAAACAAAAGAGTACATTGTTGAGAAAACCATTGAAGCCAAT 300
|| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 310 GCCTTGGCGGATGGCGAGAAAACAAAAGACTACATTGTTGAGAAAACCATTGAAGCCAAT 369
Query 301 GAAACTGCGACTGAGGAAGCTAAGAAAGCTTTGGATTATGTGACGGAGAAAGGAAAAGAT 360
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 370 GAAACTGCGACTGAGGAAGCTAAGAAAGCTTTGGATTATGTGACTGAGAAAGGAAAAGAA 429
Query 361 GCCGGAAACAAGGCGGCTGAGTTCGTAGAGGGTAAAGCAGGAGAGGCTAAGGATGCCACA 420
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 430 GCCGGAAACAAGGCGGCTGAGTTCGTAGAGGGTAAAGCAGAAGAGGCTAAGAATGCCACA 489
Query 421 AAGCCCTGATTCAACCACT 439
||| |||||||||||||||
Sbjct 490 AAGTCCTGATTCAACCACT 508
> AT2G42540.2 | Symbols: COR15A, COR15 | cold-regulated 15a | chr2:17711032-17712092
REVERSE LENGTH=755
Length=755
Score = 440 bits (238), Expect = 6e-123
Identities = 367/428 (86%), Gaps = 13/428 (3%)
Strand=Plus/Plus
Query 1 CTCATGGCGATGTCTTTATCAGGTGCTGTTCTCAGTGGCATGGGTTCTTCTTTCCACAAC 60
||||||||||||||||| ||||| |||||||||| ||| |||| ||||||||||||| |
Sbjct 124 CTCATGGCGATGTCTTTCTCAGGAGCTGTTCTCACTGGTATGGCTTCTTCTTTCCAC-A- 181
Query 61 GTAGGAGCCAAGCAGAGCAGCGTT-GGTGCCGTCGGAGTTGGCCGGAAGAGTGAGTTCGT 119
| |||||||||||||||||| || || || ||| |||| |||| ||| | | |||||||
Sbjct 182 G-CGGAGCCAAGCAGAGCAGC-TTCGGCGCTGTCAGAGTCGGCCAGAAAACTCAGTTCGT 239
Query 120 CGTCGTTGCTCAGCGCAAGAAGTCGTTGATATACGCCGTTAAAGGTGACGGCAACATCCT 179
||||||| |||| ||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 240 CGTCGTTTCTCAACGCAAGAAGTCGTTGATCTACGCCGCTAAAGGTGACGGCAACATCCT 299
Query 180 CGATGACCTCAACGAAGCCACAAAGAAAGCTTCTGATTTCGTGACGGATAAGACAAAGGA 239
||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||| ||
Sbjct 300 CGATGACCTCAACGAGGCCACAAAGAAAGCTTCAGATTTCGTGACGGATAAAACAAAAGA 359
Query 240 GGCGTTGGCGGATGGTGAGAAAACAAAAGAGTACATTGTTGAGAAAACCATTGAAGCCA- 298
||| || || |||||||||||| | ||||| ||| ||||||| |||| || |||| ||
Sbjct 360 GGCATTAGCAGATGGTGAGAAAGCGAAAGACTACGTTGTTGAAAAAAACAGTGAAACCGC 419
Query 299 ATGAAAC-T-GCGACTGAGGAAGCTAAGAAAGCTTTGGATTATGTG-ACGGAGAAAGGAA 355
| || || | | | | | |||||| |||||||| || |||||| | |||||||||||
Sbjct 420 A-GATACATTGGG--TAAAGAAGCTGAGAAAGCTGCGGCGTATGTGGA-GGAGAAAGGAA 475
Query 356 AAGATGCCGGAAACAAGGCGGCTGAGTTCGTAGAGGGTAAAGCAGGAGAGGCTAAGGATG 415
|||| |||| |||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 476 AAGAAGCCGCAAACAAGGCGGCAGAGTTCGCGGAGGGTAAAGCAGGAGAGGCTAAGGATG 535
Query 416 CCACAAAG 423
||||||||
Sbjct 536 CCACAAAG 543
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25368244235
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5