BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483349
Length=1035
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42550.1 | Symbols: | Protein kinase superfamily protein | ... 1502 0.0
AT5G12090.1 | Symbols: | Protein kinase superfamily protein | ... 171 2e-41
> AT2G42550.1 | Symbols: | Protein kinase superfamily protein
| chr2:17713196-17714230 FORWARD LENGTH=1035
Length=1035
Score = 1502 bits (813), Expect = 0.0
Identities = 962/1036 (93%), Gaps = 2/1036 (0%)
Strand=Plus/Plus
Query 1 ATGCAACCAAAAACAGAGTTCGTGAAGTTCTTGGGAAAAGGTTCATACGGATCAGTCGAT 60
||||||||||||||||||||||||||||||||| |||||||| | || ||||||||||||
Sbjct 1 ATGCAACCAAAAACAGAGTTCGTGAAGTTCTTGAGAAAAGGTGCGTATGGATCAGTCGAT 60
Query 61 CTCGTCAAGTACATCAAACGCAACGACAGCTCTTTGCCGCTATACGCCGCTGTGAAAACC 120
||||||||||||||||||||| |||| | | ||||||| || |||||||| |||||||||
Sbjct 61 CTCGTCAAGTACATCAAACGCGACGATAACGCTTTGCCTCTTTACGCCGCCGTGAAAACC 120
Query 121 GCCGAATGTGAAGACTACGACTCTCTCCAAAGAGAAATTCAGATTCTATCCAAACTCAAA 180
|||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||
Sbjct 121 GCCGAATGTGAAGACTACAACTCTCTCGAAAGAGAAATTCAGATTCTATCCAAACTTGAA 180
Query 181 GGATGTCAAAGAATCGTGCAATGCTATGGGAATTATACTTTAGAAGAGGATTTCGATGTC 240
||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 181 GGATGTCGAAGGATCGTGCAATGCTATGGGAATTATACTTTAGAAGAGGACTTCGATGTC 240
Query 241 AGCGGATTCCGAGTCTACAAGATTGTTATGGAGTACGCAGCGGCAGGGAATTTAACCACT 300
| |||||||||||||||||||| ||||||||||||||||| ||||||| |||| || |
Sbjct 241 GGTGGATTCCGAGTCTACAAGATGGTTATGGAGTACGCAGCTGCAGGGAGTTTATTCAGT 300
Query 301 TTCATGGACAGTTACAAAGATAGAAAGTTACCGGAAACGATGATCAAAGACTTCACTCGT 360
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 301 TTCATGGACAGTTACAAAGATAGAAAGTTACCGGAAACGATGATTAAAGACTTTACTCGT 360
Query 361 ATGATTCTTCAAGGATTGGTCTCTGTTCATAGCCTCGGTTATGTTCATTGCGATCTAAAA 420
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 361 ATGATTCTTCAAGGATTAGTCTCTGTTCATAGACTCGGTTATGTTCATTGCGATCTAAAA 420
Query 421 CCCGATAATCTACTTGTATTTCCGTATAGACAGTCTTACGAATTGAAGATTTCAGATTTC 480
||||||||||||||||| ||||| | |||||| |||||||||||||||||||||||||||
Sbjct 421 CCCGATAATCTACTTGTCTTTCCATGTAGACAATCTTACGAATTGAAGATTTCAGATTTC 480
Query 481 GGTTCTTCGAGAAAAGTAGGAGAATATTCGGATTGCTGGGAAGTTGATTTACCGTTTGTG 540
|| |||||||||||||| ||||||||||| ||||||||||| |||||||| ||||||||
Sbjct 481 GGGTCTTCGAGAAAAGTCGGAGAATATTCTGATTGCTGGGATGTTGATTTGCCGTTTGTT 540
Query 541 GGAACGCCTATTTACATGTCGCCAGAATCAGTCCACAACGGTGTGGCTGAGAAAACCCTA 600
||||||||| |||||||||||||||||||||||| | ||| |||||||||||| |||||
Sbjct 541 GGAACGCCTGTTTACATGTCGCCAGAATCAGTCCGTAGCGGCGTGGCTGAGAAAGCCCTA 600
Query 601 GATTTGTGGTCGTTAGGGTGCATAGTACTGGAGATGTATACCGGTGTGAGTCCATGGTCG 660
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 601 GATTTGTGGTCGTTAGGGTGCATAGTATTGGAGATGTATACCGGTGTGATTCCATGGTCG 660
Query 661 GAGGTAGAATTTGAGGATCTTGCGCCTATTCTATTGAAAGGTAAAGCGCCGGAGATTCCA 720
||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 661 GAGGTTGAATTTGAGGATCTTGCGCCTGCTCTATCAAAAGGTAAAGCGCCGGAGATTCCA 720
Query 721 GAGAGTGTACCGTGTGATGCAAGGAAGTTTCTAGAAACGTGTTTTGCAAGGAACCCTAAG 780
||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 721 AAGAGTTTACCGTGTGATGCAAGGAAGTTTCTAGAGACGTGTTTTTCAAGGAACCCTAAG 780
Query 781 GAGAGAGGAAGTGCTTCGGATTTATTGTTTCATTGGTTCTTGCGTGGTGAAGTGATATCC 840
|||||||||||||||||||||||||||| |||| ||||||||||||||||||| | |||
Sbjct 781 GAGAGAGGAAGTGCTTCGGATTTATTGTCTCATCAGTTCTTGCGTGGTGAAGTGGTCTCC 840
Query 841 GGCTTCTCGCTGCCGCCATTGAAGTTGAAGATTAAACTAGCACCGGAGAAACCGACGAAT 900
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GGCTTCTCGCTTCCGCCGTTGAAGTTGAAGATTAAACTAGCACCGGAGAAACCGACGAAT 900
Query 901 TTTTCGAAGAAGCCCTTGAAGTTAAAGATTATTCCACCAAAGCCCCCACAGTTTAAGAAA 960
|||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 901 GTTTCGAAGAAGCCCTTGAAGCTAAAGATTATCCCACCAAAGCCCCCACAGTTTAAGAAA 960
Query 961 GTTGAGATCAAGCCCTTGAAAGT-GAAGATTATGCCTCTGAAGCCTCCAGCTTCTAGTTT 1019
| || ||| || |||||||| || ||||||||||||| ||||||||||||||||||||||
Sbjct 961 GGTGGGATTAAACCCTTGAA-GTTGAAGATTATGCCTTTGAAGCCTCCAGCTTCTAGTTT 1019
Query 1020 CGTTTCTGTTCAATAG 1035
||||||||||||||||
Sbjct 1020 CGTTTCTGTTCAATAG 1035
> AT5G12090.1 | Symbols: | Protein kinase superfamily protein
| chr5:3909703-3910877 FORWARD LENGTH=1110
Length=1110
Score = 171 bits (92), Expect = 2e-41
Identities = 498/685 (73%), Gaps = 64/685 (9%)
Strand=Plus/Plus
Query 130 GAAGACTACGACTCTCTCCAAAGAGAAATTCAGATTCTATCCAAACTCAAAGGATGT-CA 188
||||| |||||| | ||| ||||||| || |||||||| || ||||||| |||| | |
Sbjct 199 GAAGAATACGACGCGCTCAAAAGAGAGATACAGATTCTGTCTGAACTCAAGGGATATCCC 258
Query 189 AAGAATCGTGCA-ATGCTATGGGAATTA-TACTTTAGAAGAGGATTTCGATG-TCAGCGG 245
|| ||||| | |||||| || | | | ||| ||||| |||||| | | || |||
Sbjct 259 AA-CATCGT-TATTTGCTAT-GG-A-GACGA-TTTGGAAGAAGATTTCAACGAACA-CGG 311
Query 246 ATTCCGAGTCTACAAGATTG-TTATGGAGTACGC-AGCGGCAGGGAATTTAACCACTTTC 303
| | ||| ||||| |||| || | || ||||| | | | ||||| ||||| | |||
Sbjct 312 ACACAAAGTTTACAA-ATTGCTTCTTGAATACGCAAAC-GAAGGGAGTTTAAGTTCATTC 369
Query 304 ATGGACAGTTA-CAAAGATAGAAAGTTACCGGAAACGATGATCAAAGACTTCACTCGTAT 362
||||| | ||| | || ||||||||||| || ||||||||| ||||||||| || ||
Sbjct 370 ATGGAGAATTATC-CCGACAGAAAGTTACCAGATCCGATGATCAGAGACTTCACGCGGAT 428
Query 363 GATTCTTC-AAGGATTGGTCTCTGTTCATAGCCTCGGTTATGTTCATTGCGATCTAAAAC 421
||||| || ||||||||||||| | ||||| | ||||||||||||||||||||| |||
Sbjct 429 GATTC-TCGAAGGATTGGTCTCAATGCATAGTCACGGTTATGTTCATTGCGATCTCAAAT 487
Query 422 CCGATAATCTACTTGTATT-TC-CGTATAGA--CAG--TCTTACGAATTGAAGATTTCAG 475
||||||| || ||| | || || || | ||| | | || | ||| || ||||||| |
Sbjct 488 CCGATAACCTTCTTATCTTCTCTCGGAAAGATTCTGCTTCGTGCGAGTTAAAGATTTTTG 547
Query 476 ATTTCGG-TTCTTCG-AGAAAAGTAGGAGAATATT-CGGATTGCTGG-GAAGTTGATTTA 531
|||| || | | | ||| |||| |||||| || ||||| |||| ||| ||| |||
Sbjct 548 ATTTTGGAAAC-T-GTAGACAAGTCGGAGAA-GTTCCGGATCACTGGAAAAG-TGA-TTA 602
Query 532 -CCGTTTGTGGGAACGCCTATTTACATGTCGCCAGAATCAGTCCACAACGGTGTGGCTGA 590
|||| |||||||||| | | | | || || || | ||||||| || |
Sbjct 603 CCCGTATGTGGGAACG-C------C---T-G--AG--TCTTTCTTCGACGGTGTTGCCAA 647
Query 591 GAAAACCCTAGATTTGTGGTCGTTAGGGTGCATAGTACTGGAGATGTATACCGGTGTG-A 649
||||||||||||||||||||||||||||||| |||| || |||| ||||| |||| | |
Sbjct 648 GAAAACCCTAGATTTGTGGTCGTTAGGGTGCTTAGTGTTGAAGATTTATACAGGTGAGCA 707
Query 650 GTCCATGGTCG-GAGGTAGAATTTGAGGATCTT-GCGCCTATTCT-ATTGAAAGGTAAAG 706
| |||||| ||| || | | | ||| || | | | |||| | ||| ||| |||
Sbjct 708 G-CCATGGGAAAGAGTTACTAGT-GTCGAT-TTCGTGAATTTTCTTAGTGAT-GGTGAAG 763
Query 707 CGCCGGAGATTCCAGAG-AGTGTACCGTGTGATGCAAG-GAAGTTTCTAGAAACGTGTTT 764
| || | ||||| || | ||| || ||||||||||| || |||| | |||||||||||
Sbjct 764 CTCCAAATATTCCTGAATA-TGTGCCTTGTGATGCAAGAGA-GTTTATTGAAACGTGTTT 821
Query 765 TGCAAGG-AACCCTAAGGAGAGAGG 788
|||||| ||| | || |||||||
Sbjct 822 CGCAAGGGAACA-TGAGAAGAGAGG 845
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50736488470
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5