BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483350
Length=2071
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42560.1 | Symbols: | late embryogenesis abundant domain-co... 2955 0.0
> AT2G42560.1 | Symbols: | late embryogenesis abundant domain-containing
protein / LEA domain-containing protein | chr2:17714638-17716912
REVERSE LENGTH=2174
Length=2174
Score = 2955 bits (1600), Expect = 0.0
Identities = 1899/2040 (93%), Gaps = 34/2040 (2%)
Strand=Plus/Plus
Query 25 GGAAGTGATTGTTAGCATTAACAATGGCGTCGGAGCAAGCAAAGAGAGAGAACAAGGTGA 84
||||||||| ||||||||||||||||||||| |||||||||| |||||| ||||||||||
Sbjct 69 GGAAGTGATCGTTAGCATTAACAATGGCGTCAGAGCAAGCAAGGAGAGAAAACAAGGTGA 128
Query 85 CGGAGAGAGAAGTTCAGGTGGAGAAAGACAGAGTCCCGAAGATGACGAGTCATTTCGAGT 144
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 129 CGGAGAGAGAAGTTCAGGTGGAGAAAGACAGAGTCCCAAAGATGACGAGTCATTTCGAGT 188
Query 145 CCATGGCCGAAAAAGGCAAAGATTTCGACACACAGAGGCATCAAACAGAAGGTGGTGGGA 204
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 189 CCATGGCCGAAAAAGGCAAAGATTCCGACACACACAGGCATCAAACAGAAGGTGGTGGGA 248
Query 205 CACAGTTCGTGTCACTTTCAGACAAGGGGAGTAACATGTCGGTTTCTAATGAAGGAGAGG 264
||||||||||||| || ||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 249 CACAGTTCGTGTCTCTCTCAGACAAGGGGAGTAACATGCCGGTTTCTGATGAAGGAGAGG 308
Query 265 GAGAGACGAAGATGAAGAGGACTCAGATGCCTCACTCCGTCGGTAAATTCGTTACGAGCA 324
|||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||
Sbjct 309 GAGAGACGAAGATGAAGAGGACTCAGATGCCTCACTCCGTTGGAAAATTCGTTACTAGCA 368
Query 325 GCGAATCAGGACCGGGGAAGAAGAAGGATGAG--A-AGGAGCATGAGAAGGCGTCGCTAG 381
|||| |||||| | |||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 369 GCGATTCAGGAACAGGGAAGAAGAAGGATGAGAAAGAGGAGCATGAGAAGGCGTCGCTAG 428
Query 382 AGGACATTCATGGATATAGAGCCAATGCTCAGCAGAAATCAATGGATACTATAAGAGCAG 441
|||| |||||||| ||||||||||||||||||||||| |||||||||| ||||| |||||
Sbjct 429 AGGATATTCATGGGTATAGAGCCAATGCTCAGCAGAAGTCAATGGATAGTATAAAAGCAG 488
Query 442 CAGAGGAAAGATATAACAAGGCTAAGGAGAGTTTGAGCCATGGTGGACAAGAAG---GTC 498
|||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 489 CAGAGGAAAGGTATAACAAGGCTAAGGAGAGTTTGAGCCATAGTGGACAAGAAGCTCGTG 548
Query 499 GA-G--G-GG-G-ACAAATGGAGGGAAAAGGGCGGGAAAGTGGTGTCCGTGTTTCTCACG 552
|| | | || | | |||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 549 GAGGAAGAGGTGAAGAAATGGTGGGAAAAGGGCGGGACAGTGGTGTCCGTGTTTCTCACG 608
Query 553 TTGGGGCTGTTGGTGGTGACGGAGGAGAG-GAAGG-AAAAGAGAGTGGTGTTCATGGCTT 610
|||||||||||||||| | || |||| | | ||| ||||||||||||||| ||||||||
Sbjct 609 TTGGGGCTGTTGGTGGCGGTGGTGGAG-GTG-AGGAAAAAGAGAGTGGTGTACATGGCTT 666
Query 611 TCATGGGGAGAAAGCACGACATGCTAAGGTTTTGGCTGCCGGAGGTGAGGAGATGAGAGA 670
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 667 TCATGGGGAGAAAGCACGACATGCTGAGCTTTTGGCTGCCGGAGGTGAGGAGATGAGAGA 726
Query 671 ACGTGAAGGTAAAGAGTCAGCCGGTGGTGTTGGTGGTCGGAGTGTAAAAGATACGGTGGC 730
||||||||||||||| ||||| ||||||||||||||||| || |||||||||||||| ||
Sbjct 727 ACGTGAAGGTAAAGAATCAGCAGGTGGTGTTGGTGGTCGTAGCGTAAAAGATACGGTAGC 786
Query 731 CGAGAAAGGACGGCAAGCTAAGGGAAGTGTTGGACAAGGTGCTCAGAAAGCCGGAAGCGC 790
||||||||||| ||||||||||| |||||| ||| |||||||||||||||| || || ||
Sbjct 787 CGAGAAAGGACAGCAAGCTAAGGAAAGTGTAGGAGAAGGTGCTCAGAAAGCGGGCAGTGC 846
Query 791 TGCCAGTGAGAAAGCTCAGAGAGCTTCGGAGTATGCAACAGAGAAAGGAAAAGAAGCTGG 850
| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 847 TACGAGTGAGAAAGCTCAGAGAGCTTCCGAGTATGCAACAGAGAAAGGAAAAGAAGCTGG 906
Query 851 AAATGTGACAGCTGAACAGGCGGCAAGAGCAAAAGACTATGCTCTGCAGAAAGCTGTTGA 910
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 907 AAATATGACAGCTGAACAGGCGGCGAGAGCAAAAGACTATGCTCTGCAGAAAGCTGTTGA 966
Query 911 AGCTAAAGAGACTGCGGCGGAGAAAGCTCAGAGAGCTTCCGAGTATATGAAGGAAACAGG 970
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 967 AGCTAAAGAGACTGCGGCGGAGAAAGCTCAGAGAGCTTCCGAGTATATGAAGGAAACAGG 1026
Query 971 AAGCACCGCGGCTGAACAGGCTGCGAGAGCAAAAGACTACACT-TTGCAGAAAGCTGTGG 1029
|||||| ||||||||||||||||||||||| ||||| |||||| || |||||||||||||
Sbjct 1027 AAGCACAGCGGCTGAACAGGCTGCGAGAGCTAAAGATTACACTCTT-CAGAAAGCTGTGG 1085
Query 1030 AAGCTAAAGATGTTGCAGCTGAGAAAGCTCAGAGAGCTTCAGAGTATATGACTGAGACAG 1089
||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||
Sbjct 1086 AAGCTAAAGATGTTGCAGCTGAGAAAGCTCAGAGAGCTTCAGAATACATGACAGAGACAG 1145
Query 1090 GAAAACAAGCCGGAAATGTTGCAGCTCAGAAAGGACAAGAGGCGGCTTCAATGACAGCAA 1149
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1146 GAAAACAAGCCGGAAATGTTGCAGCTCAGAAAGGGCAAGAGGCAGCTTCAATGACAGCAA 1205
Query 1150 AAGCTAAAGATTACACTGTTCAGAAAGCCGGTGAAGCAGCTGGGTACGTAAAAGAAACGA 1209
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1206 AAGCTAAAGATTATACTGTTCAGAAAGCCGGTGAAGCAGCTGGGTACATAAAAGAAACGA 1265
Query 1210 CGGTGGAAGGAGGAAAAGGAGCTGCACATTATGCCGGAGTGGCCGCTGAGAAAGCCGCTG 1269
| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1266 CAGTGGAAGGAGGAAAAGGAGCTGCACATTATGCAGGAGTGGCAGCTGAGAAAGCCGCTG 1325
Query 1270 CGGTTGGGTGGACAGCGGCACATTTCACCACGGAGAAAGTGGTGCAAGGGACAAAAGCGG 1329
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1326 CGGTTGGGTGGACAGCGGCACATTTCACCACGGAGAAAGTGGTGCAAGGGACGAAAGCGG 1385
Query 1330 TTGCCGGTACAGTGGAAGGTGCGGTGGGGTATGCAGGGCATAAGGCTGTGGAAGTAGGAT 1389
|||| ||||||||||||||||| |||||||| |||||||||||||| |||||||||||||
Sbjct 1386 TTGCAGGTACAGTGGAAGGTGCTGTGGGGTACGCAGGGCATAAGGCGGTGGAAGTAGGAT 1445
Query 1390 CTAAGGCAGTGGATTTGACTAAGGAGAAAGCTGCAGTGGCTGCTGATACGGTGGTCGGGT 1449
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1446 CTAAGGCAGTGGACTTGACTAAGGAGAAAGCTGCAGTGGCTGCTGATACGGTGGTTGGGT 1505
Query 1450 ATACGGCGAGGAAGAAAGAGGAAGCTCAACACAGAGACCAAGAGATGCATCAGGGAGGTG 1509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1506 ATACGGCGAGGAAGAAAGAGGAAGCTCAACACAGAGACCAAGAGATGCATCAGGGAGGTG 1565
Query 1510 AGGAAGAGAAGCGACCAGGGTTTGT-TACAGAAGCAAAGAGAGGCTATGGAGAAGAGTAC 1568
||||||| |||| |||||||||||| | ||| ||||| ||||| || |||||||||||||
Sbjct 1566 AGGAAGAAAAGCAACCAGGGTTTGTCT-CAGGAGCAAGGAGAGACTTTGGAGAAGAGTAC 1624
Query 1569 GGAGGA-GAAAGAGGGAGTGAGAAAGATGTCTATGGCTATGGACCAAAAGGCACGGCCgg 1627
|| ||| |||||||||||||||||||||||||| ||||||||| ||||||| | ||||
Sbjct 1625 GG-GGAAGAAAGAGGGAGTGAGAAAGATGTCTACGGCTATGGAGCAAAAGGAATACCCGG 1683
Query 1628 agaagcgaggagagacgttggagaggcggagtacggaggaggaagagggagtgagaaaga 1687
||||| |||| |||| ||||| ||||| ||||||||| || | | || |||||||||||
Sbjct 1684 AGAAGGGAGGGGAGATGTTGGGGAGGCAGAGTACGGA--AG-A-G-GG-AGTGAGAAAGA 1737
Query 1688 TGTCTTCGGATATGGACCAAAAGGCACGGTCGGAGAATCGAGGAGACACGTTGGAGAGGA 1747
|||||||||||||||||||||||||||||||| |||| | |||||| |||||||||| ||
Sbjct 1738 TGTCTTCGGATATGGACCAAAAGGCACGGTCGAAGAAGCAAGGAGAGACGTTGGAGAAGA 1797
Query 1748 ATACGGAGGAGGAAGAGGCAGTGAGAGATATGTCGAAGAAGAAGGGGTTGGAGCGGGAGG 1807
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1798 ATACGGAGGAGGAAGAGGCAGTGAGAGATATGTTGAAGAAGAAGGGGTTGGAGCGGGAGG 1857
Query 1808 GGTGCTTGGGGCAATCGGCGAGACTATAGCTGAGATTGCACAGACGACAAAGAACATAGT 1867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1858 GGTGCTTGGGGCAATCGGCGAGACTATAGCTGAGATTGCACAGACGACAAAGAACATAGT 1917
Query 1868 GATTGGTGATGATCCTGTGAGGACACATGAACATGGAACTACTGATCCTGACTATATGAG 1927
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1918 GATTGGTGATGCGCCTGTGAGGACACATGAGCATGGAACTACTGATCCTGACTATATGAG 1977
Query 1928 ACATGTACAAGGACAACGTTGAAAACTAATGTA-A-TGGTGAAATGTTTTG-TGGGTTTC 1984
|| | ||| ||||||||||||||| ||||||| | ||| ||||||||||| || ||||
Sbjct 1978 ACGGGAACATGGACAACGTTGAAAAGTAATGTATAATGGAGAAATGTTTTGGTGTGTTTT 2037
Query 1985 TGCTTTTCTTAAAAAGGTCTTTTGTTTTT--GTATGTAAATAACAAAGAAGCTCTGTTTG 2042
|||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 2038 TGCTTTACTTAAAAAGGTCTTTTGTTTTTTTGTATGTAAATAACAA-GAAGCTCTGTTTG 2096
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102660114525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5