BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483351
Length=1379
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42570.1 | Symbols: TBL39 | TRICHOME BIREFRINGENCE-LIKE 39 |... 2156 0.0
> AT2G42570.1 | Symbols: TBL39 | TRICHOME BIREFRINGENCE-LIKE 39
| chr2:17717367-17720080 REVERSE LENGTH=1394
Length=1394
Score = 2156 bits (1167), Expect = 0.0
Identities = 1331/1404 (95%), Gaps = 35/1404 (2%)
Strand=Plus/Plus
Query 1 CATGTGATGTGAACAATCTCACTCTCTTTCTCTATCTCTCTTTTGAGTTTC-TTGGAGTA 59
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 1 CATGTGATGTGAACAATCTCACTCTCTTTCTCTATCTCTCTTTCGAGTTTCTTTGGAGTA 60
Query 60 TTATATAACAAATCAGTCCAAGGCACCTCTTTTCTCACACCAATCTCGCTCTCACCAAAA 119
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 61 TTATATAACAAATCAGTCCAAGACACCTCTTTTCTCACACCAATCTCGCTCTCACCACAA 120
Query 120 AACAGAGAATCTCAATCTCAGATCGAAGAAACATAGTGAGAGAGAGAATGGGTTTCACTT 179
||||||| ||||||||||||||||| || | || ||||||||||||||||||||
Sbjct 121 AACAGAG------AATCTCAGATCGAAGAAGCA-A-AGAAAGAGAGAATGGGTTTCACTT 172
Query 180 CCCGAGGAAACCcttcttttctcttcttcttcttc-t-tt-ctctgtctctccacagtct 236
||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||
Sbjct 173 CCCGAGGAAACCCTTCTTTTCTCTTCTTCTTCTTCTTCTTCCTCTGTCTCTCCACAGTCT 232
Query 237 ctGCTTACATCAACAACACAAGCAGCAACAATGGA-GAAGCAAGAAGAGAGCTAGCTTCT 295
||||||||||||||| |||||||||||| ||| || |||| |||||||||||||||||||
Sbjct 233 CTGCTTACATCAACAGCACAAGCAGCAATAAT-GATGAAGTAAGAAGAGAGCTAGCTTCT 291
Query 296 GGGAGATGTAATTGGTTTAGAGGGAATTGGGTTTATGATGCAAAGTATCCACTTTATGAT 355
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 292 GGGAGATGTAATTGGTTTAGAGGGAATTGGGTTTATGATGTAAAGTACCCACTTTATGAT 351
Query 356 CCTTATAAATGTCCATTCATAGATCCACAGTTTAACTGTAAGAAGTATGGTCGTCCTGAC 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 CCTTATAAATGTCCATTCATAGATCCACAGTTTAACTGTAAGAAGTATGGTCGTCCTGAC 411
Query 416 AATGCTTACCTTAAGTTTAGATGGCAACCATCTTCTTGCTCTCTCCCCAGATTCAATGGG 475
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 412 AATGCTTACCTTAAGTATCGATGGCAACCATCTTCTTGCTCTCTCCCCAGATTCAATGGG 471
Query 476 TTGTATTTCTTGAGGAGGATGAGAGGGAAGAAGATAATGTTCGTTGGAGATTCACTAAGC 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 TTGTATTTCTTGAGGAGGATGAGAGGGAAGAAGATAATGTTCGTTGGAGATTCACTAAGC 531
Query 536 ACTAACATGTGGCAATCTCTTGCTTGTCTAATTCACTCTTGGGTTCCTAACACTCGTTAC 595
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 ACAAACATGTGGCAATCTCTTGCTTGTCTAATTCACTCTTGGGTTCCTAACACTCGTTAC 591
Query 596 ACTCTTCTTCGCCAAAAGGGTCTCGCTTCACTTACCTTTGAGGAATACGGAGTGACGTTG 655
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 592 ACTCTTATTCGCCAAAAGGGTCTTGCTTCACTTACCTTTGAGGAATACGGAGTGACGTTG 651
Query 656 TTGCTATACAGAACACAGTTCTTAGTAGATTTGAATGTGGAGAAAGTTGGGAGAGTTCTT 715
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 652 TTGCTATACAGAACACAGTTCTTGGTAGATTTGAATGTGGAGAAAGTTGGGAGAGTGCTT 711
Query 716 AAGCTAGATTCCATTAAGCAAGGCAACATGTGGAGAGGCATGGACGTTTTGATTTTCAAC 775
||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 712 AAGCTTGATTCCATTAAGCAAGGGAATATGTGGAGAGGCATGGACGTTTTGATTTTCAAC 771
Query 776 TCGTGGCATTGGTGGACACACACCGAACACATTCAGCCGTGGGATTACATGGAAGATGGG 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 TCGTGGCATTGGTGGACACACACCGAACACATTCAGCCGTGGGATTACATGGAAGATGGG 831
Query 836 AATAGATTGTACAAAGACATGAACCGGCTCGTTGCTTTCTATAAAGGAATGACCACTTGG 895
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 832 AATAGGTTGTACAAAGACATGAACCGGCTCGTTGCTTTCTACAAAGGAATGACCACTTGG 891
Query 896 GCTCGATGGGTTAATACTTACGTCGATCCTTCTAAGACTAAAGTCTTCTTCAACGGCGTG 955
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 892 GCTCGATGGGTTAATGCTTACGTCGATCCTTCTAAGACTAAAGTCTTCTTCAACGGCGTG 951
Query 956 TCTCCTACTCATTACGAGGGAAAGGATTGGGGAGAGCCAATGAACTCATGTAAGAGTCAG 1015
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 952 TCTCCTACTCATTACGAGGGAAAGGATTGGGGAGAGCCAATGAACTCATGTAGGAGTCAA 1011
Query 1016 ACGCAGCCATTTTACGGGAGGAAGTATCCAGGAGGGACACCAATGGCTTGGGTAGTTT-T 1074
||||||||||||||||| ||||||||||||||||||||||||||||||||||| | || |
Sbjct 1012 ACGCAGCCATTTTACGGAAGGAAGTATCCAGGAGGGACACCAATGGCTTGGGT-GATTCT 1070
Query 1075 AAACAAAGTGATGAGGAGATTGAAGAAACCGGTCCATTGGCTAGATATAACCGGTCTGTC 1134
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1071 AAACAAAGTGATGAGGAGATTGAAGAAACCGGTCCATTGGCTCGATATAACCGGTCTGTC 1130
Query 1135 TCAGCTTCGTAAAGATGGTCATCCTTCTGCTTTCAGTGGGAACCATCCTGGTAACGACTG 1194
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 1131 TCAGCTTCGTAAAGATGCTCATCCTTCTGCTTTCAGTGGGAACCATCCTGGTAATGACTG 1190
Query 1195 CAGCCATTGGTGTCTTCCTGGTTTGCCTGATACTTGGAACTTGCTCTTTTACTCTACTCT 1254
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1191 TAGCCATTGGTGTCTCCCTGGTTTGCCTGATACTTGGAACTTGCTCTTTTACTCTACTCT 1250
Query 1255 TTTCTCTT---ACT-AA--C-TTTCTCATCAATGTATAAGTTAACTTAAAGCAACAATCA 1307
|||||||| | | || | ||||||||||||||||||||||||||||| |||||||||
Sbjct 1251 TTTCTCTTCTTAATTAATTCCTTTCTCATCAATGTATAAGTTAACTTAAAACAACAATCA 1310
Query 1308 ATTATTTTTAGTTATCTTT---T-TGATT--------CTTGACTGAAATAACTCTTTAAT 1355
||||||||||||||||||| | || || ||||||||||| ||||||| |||
Sbjct 1311 ATTATTTTTAGTTATCTTTCACTATGGTTGTTTGTTTCTTGACTGAAACAACTCTTAAAT 1370
Query 1356 AAGACCAACGCACTTGACTCTGTG 1379
||||||||||||||||||||||||
Sbjct 1371 AAGACCAACGCACTTGACTCTGTG 1394
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67921337385
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5