BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483352
Length=2410
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42580.1 | Symbols: TTL3, VIT | tetratricopetide-repeat thio... 3570 0.0
> AT2G42580.1 | Symbols: TTL3, VIT | tetratricopetide-repeat thioredoxin-like
3 | chr2:17728715-17731718 FORWARD LENGTH=2473
Length=2473
Score = 3570 bits (1933), Expect = 0.0
Identities = 2255/2408 (94%), Gaps = 32/2408 (1%)
Strand=Plus/Plus
Query 30 TGACTTCTTTGAGAAGAAGAAAGAAGAAGCTGAGTCTC--GTTAGATTCAGCTTACGAGG 87
|||||||| ||||||||||||| | ||||||||||||| |||||||||||| ||||||
Sbjct 71 TGACTTCTCTGAGAAGAAGAAA-AGGAAGCTGAGTCTCATTTTAGATTCAGCTCACGAGG 129
Query 88 AAGT------GATGTCTCATTCTAGAAGACTTTCGTTGGAACCTGCTATAGATTCAATCA 141
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 130 AAGTGACGACGATGTCTCATTCTAGAAGACTTTCGTTGGAACCTGCTATAGATTCAATCA 189
Query 142 CAGGTCGATTTCGTGATTTACAGAG-AA--ACGATGACGTCAACAAACCTGATTTTCGAG 198
| ||||||||||||||||||||||| || | ||||||||||||||||||||||||||||
Sbjct 190 CTGGTCGATTTCGTGATTTACAGAGAAATGATGATGACGTCAACAAACCTGATTTTCGAG 249
Query 199 AACTCGATCTGGGTTCTCCTGTTTCTACCTTAATGCCACGTGGCTCTGCTTCTTCTTCCG 258
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 250 AACTCGATCTAGGTTCTCCTGTTTCTACCTTAATGCCACGTGGCTCTGCTTCTTCTTCCG 309
Query 259 CCGCTGCGACTCCTACGAGCAGCTCTGGTTCTTCAGGCTCTGCTTCTGGTAAACCGTCGG 318
| |||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 310 CTGCTGCGACTCCTACTAGCAGCTCTGGCTCTTCTGGCTCTGCTTCTGGTAAACCGTCGG 369
Query 319 TGAGTTCTCAGATGGGTAAGCGGTTAGA-GAATGGTTACAGGAGTCACTCCGGTGAGCTT 377
||||||||||||||| ||| |||||||| | ||| ||||| |||||| ||||||||||||
Sbjct 370 TGAGTTCTCAGATGGCTAAACGGTTAGATG-ATGCTTACAAGAGTCATTCCGGTGAGCTT 428
Query 378 TCTAGCCCCGGATCCGGAATGCCG---ACGACCCGGAATCTTAAACCGGGTCATAGAAGA 434
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 429 TCTAGCCCCGGATCCGGAATGCCGACCACGACCCGGATTCTTAAACCGGGTCATAGAAGA 488
Query 435 TCTTCCTCTACTGGAACGCCGTTGATCTTCTCTGGCTCTAGCTTTACCTCAGCAACGAGT 494
||||| |||||||| ||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 489 TCTTCTTCTACTGGCACGCCTTTGATCTTCTCTGGCTCTAGCTTTACTTCAGCAACGAGT 548
Query 495 CACACCTCGCCGCAAGGAGGTGGTAGCGGTGCTACGTCTGCAGTGTCGCCGAGTCCCGGC 554
||||||||||| |||||||||||||||||||||||||| |||||||| || | | | |||
Sbjct 549 CACACCTCGCCACAAGGAGGTGGTAGCGGTGCTACGTCGGCAGTGTCTCCCAATACTGGC 608
Query 555 GTTTTACCGGCGGGAAACATTTGTCCCTCGGGTCGGATCTTGAAAACCGGAATGGCGTCT 614
||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||
Sbjct 609 GTTTTACCGGCGGGAAATATTTGTCCGTCGGGTCGGATCTTGAAAACTGGAATGGCGTCT 668
Query 615 CGGACCTCAAGTAGGACTGAGACTCTGTGCACAGGAACTGGAAATTACGGACATGGAAAC 674
||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 669 CGGACTTCAAGTAGGACTGAGACTCTATGCACAGGAACTGGTAATTACGGACATGGAAAC 728
Query 675 GTTGTACGCAGTGGC---GCAGGAGGAAGCAGCGGAAAGACGGTGAGAGCGGCGGAGAAC 731
||||||||||| ||| | |||||||| |||||||||| ||||||||| |||||||||
Sbjct 729 GTTGTACGCAGCGGCGGAGGAGGAGGAACCAGCGGAAAGGCGGTGAGAGTGGCGGAGAAT 788
Query 732 GGCGAAAATCCGGAGGAGTTGAAGAGAATGGGGAATGATATGTATAGGAGAGGGAATTTC 791
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 789 GGCGAAAACCCGGAGGAGTTGAAGAGAATGGGGAATGATATGTATAGGAGAGGGAGTTTC 848
Query 792 TCTGAAGCTCTGTCGCTTTACGACAGAGCAATTTCGATTTCACCGGAAAATGCAGCTTAC 851
|||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||
Sbjct 849 TCTGAAGCTCTGTCGCTTTATGACAGAGCAATTTTGATTTCACCGGGAAATGCAGCTTAC 908
Query 852 AGAAGCAACCGTGCGGCAGCGTTAACGGCGTTAAGACGGTTAGGAGAAGCCGTTAAAGAA 911
|||||||||||||| || || |||||||| || || ||||||||||||||||||||||||
Sbjct 909 AGAAGCAACCGTGCCGCGGCTTTAACGGCATTGAGGCGGTTAGGAGAAGCCGTTAAAGAA 968
Query 912 TGTCTTGAAGCTGTTAGGCTTGATCCTTCTTACTCCAGAGCTCACCAAAGACTTGCTTCT 971
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 969 TGTCTTGAAGCTGTTAGGATTGATCCTTCTTACTCCAGAGCTCACCAAAGACTTGCTTCT 1028
Query 972 CTATATCTCAGATTGGGAGAAGCTGAGAATGCAAGACGTCATATTTGTTTTTCCGGGCAA 1031
|| |||||||||||||| ||||||||||||||||||||||| ||||||||||| || |||
Sbjct 1029 CTCTATCTCAGATTGGGTGAAGCTGAGAATGCAAGACGTCACATTTGTTTTTCTGGTCAA 1088
Query 1032 TGTCCGGATCAAGCTGATCTCCAACGGCTGCAGACACTGGAGAAGCATCTCCGGCGATGC 1091
||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||
Sbjct 1089 TGTCCGGATCAAGCTGATCTCCAACGGCTACAGACGCTGGAGAAGCATCTCCGACGATGC 1148
Query 1092 TGGGAGGCTCGGAAGATTGGAGATTGGAAAACCGCGATTAAGGAAACCGATGCAGCCATT 1151
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1149 TGGGAGGCTCGAAAGATTGGAGATTGGAAAACCGCGATTAAGGAAACCGATGCAGCCATT 1208
Query 1152 GCAAACGGCGCTGATTCGTCTCCTCAGCTTGTAGCTTGTAAAGCAGAAGCCTTTTTGCGT 1211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1209 GCAAACGGCGCTGATTCGTCTCCTCAGCTTGTAGCTTGTAAAGCAGAAGCCTTTTTGCGT 1268
Query 1212 CTTAACCAAATAGAGGATTCAGATTTTTGTCTATCTTGCATTCCAAGATTGGATCATCAT 1271
||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 1269 CTTAAGCAAATAGAGGATTCGGATTTTTGTGTATCTTGCATTCCAAGATTGGATCATCAT 1328
Query 1272 TACCATTCTCAGCCGCAGGCGAAACTCTTTGGTATGGTAGTTGAAGCTTATGTGCTCTGT 1331
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1329 TACCATTCTCAACCGCAGGTGAAACTCTTTGGTATGGTAGTTGAAGCTTATGTGCTCTGT 1388
Query 1332 ATCCAATCTCAAGTTGATATGGCATTAGGAAGATTTGAGAATGCGGTTGTAAAGGCAGAG 1391
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1389 ATCCAAGCTCAAGTTGATATGGCATTAGGAAGATTTGAGAATGCGGTTGTCAAGGCAGAG 1448
Query 1392 AGAGCTGCAATGCTCGATCAGACCAATCCTGAGGTAGCATCAGTTTTAAACAATGTGAAG 1451
|||||||| ||||| ||||| |||||||||||||| | ||||||||||||||||||||||
Sbjct 1449 AGAGCTGCGATGCTTGATCAAACCAATCCTGAGGTTGTATCAGTTTTAAACAATGTGAAG 1508
Query 1452 ATGGTTGTGCGGGCACGTACTCGTGGTAATGAGTTGTTTAGTTCGGGGAGATTCTTGGAT 1511
||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||
Sbjct 1509 ATGGTTGTGCGGGCACGTACTCGTGGTAATGAGCTATTTAGTTCGGGGAGATTCTCGGAA 1568
Query 1512 GCGAGTGTTGCTTATGGAGACGGTCTCAAGCACGATGAATCCAATTCGGTTTTGTACTGC 1571
||| |||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1569 GCGTGTGTAGCTTATGGAGACGGTCTCAAGCAAGATGACTCCAATTCGGTTTTGTACTGC 1628
Query 1572 AACAGAGCAGCGTGTTGGTATAAGCTCGGTTTGTGGGAGAAATCTGTTGAAGATTGTAAC 1631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 AACAGAGCAGCGTGTTGGTATAAGCTCGGTTTGTGGGAGAAATCTGTTGAAGATTGTAAC 1688
Query 1632 CATGCGCTCAAAATCCAGCCTAGTTACATCAAGGCACTTCTACGAAGGGCTGCTTCTTAT 1691
||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1689 CATGCGCTCAAAAGCCAGCCTAGTTACATCAAGGCACTTCTACGTAGGGCTGCTTCATAT 1748
Query 1692 GGAAAGCTTGGTCGGTGGGAGGATGCAGTCAAAGATTATGAGTTCTTGAGAAGGGAACTT 1751
|||||||||||| ||||||||||||| || ||||||||||||||||||||||| ||||||
Sbjct 1749 GGAAAGCTTGGTAGGTGGGAGGATGCGGTTAAAGATTATGAGTTCTTGAGAAGAGAACTT 1808
Query 1752 CCAGGAGACAGCGAAGTTGCAGAGTCTCTAGAGAGAGCGAAAACCGTGCTAATGAACAGA 1811
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1809 CCAGGAGACAGTGAAGTTGCAGAGTCTCTAGAGAGAGCGAAAACAGTGCTAATGAACAGA 1868
Query 1812 AGCCAAGAATCTAAAAGCCTAGGTTTCAATAATGAAGTTGAAGCGGTTTCGACTTTGGAT 1871
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1869 AGCCAAGAATCTAAAAGCCTAGGTTTCAATAATGAAGTTGAAGCGGTTTCGACTTTGGAT 1928
Query 1872 AAGTTCAAGAGCTCGGTAGCACTTCCCGGTGTCACTGTATTTCATTTCAAATCATCATCA 1931
|||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1929 AAGTTCAAGAAATCCGTAGCACTTCCCGGTGTCTCTGTATTTCATTTCAAATCATCATCA 1988
Query 1932 AACCGACAATGCGAAGAAATTTCTCCTTTCATCAACACTTTATGTCTCCGGTATCCATTA 1991
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1989 AACCGACAATGCGAAGAAATTTCTCCATTCATCAACACTTTATGTCTTCGGTATCCATTA 2048
Query 1992 GTACATTTCTTTAAGGTGGATGTGGAGGAGAGCATGGCATTGGCGAAAGCAGAGAGTATC 2051
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2049 GTACATTTCTTTATGGTGGATGTGGAGGAGAGCATGGCGTTGGCGAAAGCAGAGAGTATC 2108
Query 2052 AGGAAAGTTCCTACATTCAAGATGTACAAGAATGGAGATAAAGTGAAGGAGATGGTTTGT 2111
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2109 AGGAAAGTTCCGACATTTAAGATGTACAAGAATGGAGATAAAGTGAAGGAGATGGTTTGT 2168
Query 2112 CCGAGCCATCAGTTTCTAGAGGACTCTATAAAGCATTTCCTCTTATAACTGAAAAAGCCC 2171
|| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 2169 CCTAGCCATCAGTTTCTAGAGGACTCTATAAAGCATTTCCTCTTATGATTGAAAAAGCCC 2228
Query 2172 TATCATCGTTCTCTGCTTCCCTATGATTCGATCCGAAGAGCCTATTCAAA-GACTCAGAA 2230
||||||| || |||||||||||||||||||||||||| |||||||| ||| |||||||||
Sbjct 2229 TATCATCATTATCTGCTTCCCTATGATTCGATCCGAATAGCCTATTTAAAAGACTCAGAA 2288
Query 2231 AGTAATCTTTGTTAAAGATGGGAAAGAGCTATTCTGTCAAATTCAACAAACTATTCAttc 2290
|| | ||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2289 AGCATTCTATGTGAAAGATGGGAAAGAGCTCTTCTGTCAAATTCAACAAACTATTCATTC 2348
Query 2291 tttcttctttttttcgattctaattctt-ttt-ttt-t-----GAAGTTTCACTCTGCTT 2342
||||||||| || |||||||||||||| ||| ||| | | ||||| ||||||||
Sbjct 2349 TTTCTTCTTATT--CGATTCTAATTCTTCTTTATTTATTTTTTGGAGTTTGGCTCTGCTT 2406
Query 2343 GCTTTGGCTATATTACATATTAGTAAATGTTCGCAAGGATTCAAGAAATACAAGCTTCAT 2402
|||||||| ||||||| ||| |||||||||||||| |||||||||||| ||||||||||
Sbjct 2407 GCTTTGGC-ATATTACGTATGGGTAAATGTTCGCAATGATTCAAGAAATGCAAGCTTCAT 2465
Query 2403 TATCTATT 2410
||||||||
Sbjct 2466 TATCTATT 2473
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 119678099280
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5