BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483355
Length=1152
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42590.3 | Symbols: GRF9, GF14 MU | general regulatory facto... 1432 0.0
> AT2G42590.3 | Symbols: GRF9, GF14 MU | general regulatory factor
9 | chr2:17731855-17733967 REVERSE LENGTH=1332
Length=1332
Score = 1432 bits (775), Expect = 0.0
Identities = 913/977 (93%), Gaps = 19/977 (2%)
Strand=Plus/Plus
Query 1 AACCCGCGTTAATTACGCTTGTGTCCCTACGCGCGTCTCAAAGATCTCTCTCTGTGTCTG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 19 AACCCGCGTTAATTACGCTTGTGTCCCTACGCGCGTCTCAAAGATCTCTCTCT-TCTCTG 77
Query 61 GAG-aaaaa-aaaaCAAAAGAAGAGCGTTCGTCGAGAGATATACATACTCGGATCAGTCG 118
||| ||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 78 GAGAAAAAATAAAACAAAAGAACAGCGTTCGCCGAGAGATATACATACTCGGATCAGTCG 137
Query 119 TCAAAA-C-TCAAAAGCTTTGGA-A--TTTGA---TACTA-AATCTTGAAAAATCAGTCA 169
|||||| | | || ||| || | ||||| | | | ||||||| |||||||||||
Sbjct 138 TCAAAAGCTTTGGAA--TTT-GATACTTTTGATTTTTCGAGAATCTTG-AAAATCAGTCA 193
Query 170 TGGGTTCTGGAAAAGAGCGTGACACTTTCGTCTACCTCGCTAAGCTCTCTGAGCAAGCTG 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 194 TGGGTTCTGGAAAAGAGCGTGACACTTTCGTCTACCTCGCTAAGCTCTCTGAGCAAGCTG 253
Query 230 AGCGCTATGAAGAAATGGTGGAATCAATGAAAAATGTTGCGAAATTGAATGTTGATCTGA 289
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 254 AGCGTTATGAAGAAATGGTGGAATCAATGAAAAGTGTTGCGAAATTGAATGTTGATCTGA 313
Query 290 CGGTGGAAGAGAGGAATTTGCTCTCTGTGGGATACAAGAACGTGATTGGTTCAAGGAGAG 349
|||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||
Sbjct 314 CGGTGGAAGAGAGGAACTTACTCTCTGTGGGTTACAAGAACGTGATTGGTTCAAGGAGAG 373
Query 350 CTTCCTGGAGGATATTCTCGTCGATCGAACAGAAAG-AAGCAGTGAAAGGGAATGATGTT 408
|||| |||||||| ||||||||||| ||||| |||| |||||||||||||||||||||||
Sbjct 374 CTTCGTGGAGGATCTTCTCGTCGATTGAACA-AAAGGAAGCAGTGAAAGGGAATGATGTT 432
Query 409 AATGTAAAGAGGATCAAAGAGTATATGGAGAAGGTTGAGTTGGAGCTTTCAAACATATGC 468
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 433 AATGTAAAGAGGATCAAAGAGTATATGGAGAAGGTTGAGTTAGAGCTTTCTAACATATGC 492
Query 469 ATTGATATAATGTCTGTGTTAGATGAGCATCTGATTCCATCGGCTTCCGAGGGTGAATCA 528
|||||||| |||||||| |||||||||||||| ||||| ||||||||||||||||||||
Sbjct 493 ATTGATATTATGTCTGTCTTAGATGAGCATCTCATTCCTTCGGCTTCCGAGGGTGAATCT 552
Query 529 ACTGTCTTCTTCAACAAGATGAAAGGTGACTATTACCGCTATCTTGCGGAGTTCAAATCA 588
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 553 ACTGTCTTCTTCAACAAGATGAAAGGTGACTATTACCGCTATCTTGCTGAGTTCAAATCA 612
Query 589 GGGAATGAGAGGAAAGAGGCTGCTGATCAGTCTTTGAAAGCCTATGAGATTGCTACTACT 648
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 613 GGGAACGAGAGGAAAGAGGCTGCTGATCAGTCTTTGAAAGCCTATGAGATTGCTACTACT 672
Query 649 GCTGCTGAGGCTAAACTCCCTCCTACACATCCTATCAGATTGGGTTTGGCTTTGAATTAC 708
|||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||| |
Sbjct 673 GCTGCTGAGGCTAAGCTCCCTCCAACACACCCTATCAGATTGGGTTTGGCTTTGAATTTC 732
Query 709 TCTGTCTTCTACTATGAGATCATGAACGCACCTGAAAGGGCATGTCACCTTGCGAAGCAG 768
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 733 TCTGTCTTCTACTACGAGATCATGAACGCACCTGAAAGGGCATGTCACCTTGCTAAGCAG 792
Query 769 GCGTTCGATGAAGCTATCTCAGAGCTTGACACTCTGAATGAGGAATCCTACAAAGACAGC 828
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 793 GCGTTCGATGAAGCTATCTCAGAGCTTGACACTCTGAACGAGGAATCCTACAAAGATAGC 852
Query 829 ACCTTAATTATGCAACTCCTCAGGGACAATCTGACCTTGTGGACTTCTGACATCCCAGAA 888
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 853 ACCTTAATAATGCAACTCCTTAGGGACAATCTGACCTTGTGGACTTCTGACATCTCAGAA 912
Query 889 GAAGGAGCAGATGATGCCCATAAGACAAATGGTTCTTCCAAAGCTGGTGCAGGTGGAGAT 948
||||||| ||| ||||| |||||||| ||||||||| ||||| ||||||| ||||||||
Sbjct 913 GAAGGAGGAGACGATGCTCATAAGACGAATGGTTCTGCCAAACCTGGTGCTGGTGGAGAC 972
Query 949 GATGCTGAGGTAAAGTA 965
||||| ||||||| |||
Sbjct 973 GATGCAGAGGTAA-GTA 988
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56525813670
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5