BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483365
Length=2698
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42700.2 | Symbols: | FUNCTIONS IN: molecular_function unkn... 3938 0.0
> AT2G42700.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: vesicle-mediated transport, vesicle docking
involved in exocytosis; LOCATED IN: cellular_component unknown;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING:
14 growth stages; CONTAINS InterPro DOMAIN/s: Sec1-like protein
(InterPro:IPR001619). | chr2:17778274-17782187 FORWARD
LENGTH=2947
Length=2947
Score = 3938 bits (2132), Expect = 0.0
Identities = 2421/2556 (95%), Gaps = 37/2556 (1%)
Strand=Plus/Plus
Query 1 ATGCTCGTCGTCGGTGAGATATCCCGGCGAAGCGAGATCAGTGTTTCTCCGGTGGTTCAA 60
||| |||||||||||||||| |||||||||||||| | |||||||||||||||||||||
Sbjct 28 ATGTTCGTCGTCGGTGAGATTTCCCGGCGAAGCGAAAGCAGTGTTTCTCCGGTGGTTCAG 87
Query 61 GCATTAGTCTGA-TTGAGACAGCACATCTC--A-T-A-GT-ATT-T---T---GA--T-- 102
|||| ||||||| || ||||| |||||||| | | | | ||| | | || |
Sbjct 88 GCATCAGTCTGATTTCAGACAACACATCTCATAGTAATTTGATTCTAACTGGCGATTTCA 147
Query 103 -TCTAGCT-G---GA--G-AT----TTC-AGTAGCTGAGAGCAATGGCTCTGATCGATGT 149
||||||| | | | || ||| ||||||||||||||||||||||||||||||
Sbjct 148 CTCTAGCTCGACCAATTGTATCCAATTCTCGTAGCTGAGAGCAATGGCTCTGATCGATGT 207
Query 150 CGCGATATCTTGTCTCAATTCGATCCGCGAAATAGAAGAGGATGTTAAAGATGCCATTGT 209
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 208 CGCGATATCTTGTCTCAATTCGATCCGCGAAATAGAAGAGGATGTAAAAGATGCGATTGT 267
Query 210 ATATATCGATGCTGGGTGCACAGAAAGTTTTCAATTTGTAGGAGCTTTCCCTTTGTTCTT 269
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 268 GTATATCGATGCTGGCTGCACAGAAAGTTTTCAATTTGTAGGAGCTTTCCCTTTGTTCTT 327
Query 270 GGAACTAGGTGCTCGAGCTGTCTGCAGTCTTGAAAATATGACTTCCCTAGACGCGGTGGC 329
|||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||
Sbjct 328 GGAACTAGGTGCTCGAGCTGTCTGCAGTCTTGAAAACATGACTTCCTTAGATGCGGTGGC 387
Query 330 TGATTGGAATTCAAAGACTGATTGTGCCAAGAGAATTGTGATTATGACATCTCGGCTTCT 389
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 388 TGATTGGAATTCAAAGTCTGATTGTGCCAAGAGAATTGTGATTATGACATCTCGACTTCT 447
Query 390 CAATGATGCTCATCGATATATGCTACGGTGTCTAAGCACCCATGAAGGTGTTCAACACTG 449
||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||
Sbjct 448 CAATGATGCTCATCGGTATATGCTACGGTGTCTAAGCACCCATGAAGGTGTTCAGCGCTG 507
Query 450 CACCGTATTCACGTCTATTTCTGAGGGGTCTCACGCAGCCATCCCTGATTTACCTCTCGG 509
|||||||||||| |||||||| |||||||||||| |||| |||||||||| |||||| ||
Sbjct 508 CACCGTATTCACATCTATTTCAGAGGGGTCTCACTCAGCTATCCCTGATTCACCTCTAGG 567
Query 510 TCCAGACGCGTA-CAGAGAGTACGAAACCTTACTTGTTCAGGATTACAATGAACATACTA 568
|||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 568 TCCAGACGCGTATC-GAGAGTATGAAACCTTACTTGTTCAGGATTACAATGAACATACTA 626
Query 569 AGAAAAGCGACAAAATATCTAAAGACAAAGGGGTTTCTAAGTTCTCTTCTGCACTTGAAT 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 627 AGAAAAGCGACAAAATATCTAAAGACAAAGGGGTTTCTAAGTTCTCTTCTGCACTTGAAT 686
Query 629 CCCTGACTATGGAGCCTATTGCAAGCGAAAATGTAGATATTTCATCAGGTGGTGCAGAAG 688
|||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 687 CCCTTACTATGGAGCCTATTGAAAGCGAAAATGTAGATATTTCATCAGGTGGTGCACAAG 746
Query 689 GTTTGGTAGTCTCGGTGCACCACTTCCCCTTGATTATTTGTCCTTTCACTCCTCGAGCGT 748
||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 747 GTTTGGTTGTCTCAGTTCACCACTTCCCCTTGATTATTTGTCCTTTCACTCCTCGAGCGT 806
Query 749 TTGTCTTACCTTCCCAAGGATCAGTCGCAGAAGCGTCCTTGTCCCGTCAACATGAGGATT 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 807 TTGTCTTACCTTCCCAAGGATCAGTCGCAGAAGCGTCCTTGTCCCGTCAACATGAGGATT 866
Query 809 CTCTTAGTTTTGGTTTGCCTCCCATAAGTACTGGATCTATGTCTGATGCTGATGATGTTC 868
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 867 CTCTTAGTTTTGGTTTGCCTCCCATAAGTACTGGATCTATGTCTGACACTGATGATGTTC 926
Query 869 CTTCGGGTGCAACTCTTACCGCACATTTTCTTTACCAGCTGGCCCTTAAGATGGAGTTGA 928
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 927 CTCCTGGTGCAACTCTTACCGCACATTTTCTTTACCAGCTGGCCCTTAAGATGGAGTTGA 986
Query 929 AGTTGGAAATTTTTTCACTTGGCGACCTATCGAAGAGTGTTGGGAAGATTCTGACAGACA 988
|||||||||| ||||||||||| |||| |||||||| ||||||||||||||| |||||||
Sbjct 987 AGTTGGAAATATTTTCACTTGGTGACCAATCGAAGAATGTTGGGAAGATTCTAACAGACA 1046
Query 989 TGTCAAGTGTTTATGATGTAGGGCGTCGTAAGCGATCTGCCGGCTTGTTACTTGTTGACC 1048
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 1047 TGTCAAGTGTTTATGATGTAGCGCGTCGTAAGCGATCTGCTGGCTTGTTACTTGTTGACC 1106
Query 1049 GCACACTTGATCTTATCACTCCCTGCTGTCATGGGGATTCACTTTTCGATCGTATCTTTT 1108
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1107 GCACACTTGATCTTATCACTCCCTGCTGTCACGGGGATTCACTTTTCGATCGTATCTTTT 1166
Query 1109 CATCTTTGCCTAGGGCAGAAAGATTTTCTTCACAAGCACAGCTTAAACAAGGGGTCCCAA 1168
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1167 CATCTTTGCCTCGGGCAGAAAGATTTTCTTCACAAGCACAGCTTAAACAAGGGGTCCCAA 1226
Query 1169 GCATCAATCGTCCTTCTCTTGATGTTCAAGTGCCGCTTGGGGAACTGCTTAATGAAGAAC 1228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1227 GCATCAATCGTCCTTCTCTTGATGTTCAAGTGCCGCTTGGGGAACTGCTTAATGAAGAAC 1286
Query 1229 CAAGCAAGATTCGGGATTCTGGTCTTCCTGAAGGAATTGAAGCTTTTTTACGTGGCTGGG 1288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1287 CAAGCAAGATTCGGGATTCTGGTCTTCCTGAAGGAATTGAAGCTTTTTTACGTGGCTGGG 1346
Query 1289 ATTCATACACTTCTGATCCGCAAAATGGAGGTGTGCTTAATGAATGTAACAAGAAATCTA 1348
||||||| || |||| ||| ||||||| |||| || ||||||||||| ||||||||||||
Sbjct 1347 ATTCATATACCTCTGCTCCACAAAATGTAGGTTTGTTTAATGAATGTGACAAGAAATCTA 1406
Query 1349 CCACCAACTGGACTGAACTACTAAATGGATCTCTTGTCGCTACTGAATGTTTTAGAGGAA 1408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 CCACCAACTGGACTGAACTACTAAATGGATCTCTTGTCGCTACTGAATGTTTTAGAGGAA 1466
Query 1409 CACCTTACTTAGAGGCCATGATTGATAGGAAAACAAAGGATGGAAGTGTACTGGTGAAGA 1468
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1467 CACCTTACTTAGAGGCCATGATTGATAGGAAAACGAAGGATGGAAGTGTACTGGTGAAGA 1526
Query 1469 AATGGCTTCAAGAGGCTCTT-CGTCGCGAAAATATCTCTGTTAATGTGAGAGCTCGTCCT 1527
||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||
Sbjct 1527 AATGGCTTCAAGAGGCT-TTGCGTCGCGAAAATATCTCTGTTAACGTGAGAGCTCGTCCT 1585
Query 1528 GGTTATGCTACAAAACCGGAGCTCCAAGCCATGAT-AAGAGCATTGTCCCAAAGCCAGTC 1586
|||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||
Sbjct 1586 GGTTATGCTACAAAACCGGAGCTCCAGGCCATGATCAA-AGCATTGTCCCAAAGCCAGTC 1644
Query 1587 ATCTTTGTTGAAAAACAAAGGGATTATTCAGTTAGCGGCAGCTACAGCCGCTGCTCTTGA 1646
|||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1645 GTCTTTGTTGAAAAATAAAGGGATTATTCAGTTAGGGGCAGCTACAGCCGCTGCTCTTGA 1704
Query 1647 TGAATCTCAAAGTGCCAAATGGGATACTTTTAGCAGTGCAGAGATGATGTTAAACGTAAG 1706
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1705 TGAATCTCAAAGTGCCAAATGGGATACTTTTAGCAGTGCGGAGATGATGTTAAACGTAAG 1764
Query 1707 TGCTGGTGATACGAGTCAGGGTTTGGCTGCTCAAATTAGTGACCTCATCAACAAAAGCGC 1766
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1765 TGCTGGTGATACGAGTCAGGGTTTGGCTGCTCAAATTAGTGACCTGATCAACAAAAGCGC 1824
Query 1767 TCTGGCAGAACTTCAAGCGAAGAAGAATGAGAAACCAGATTCCTCATCACGAGGGCTGCT 1826
| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1825 TGTGGCAGAACTTCAAGCGAAGAAAAACGAGAAACCAGATTCCTCATCACGAGGGCTGCT 1884
Query 1827 ATCTTTCCGTGACGCCCTACTCCTTACAATTGTTGGTTACATTCTTGCTGGCGAGAATTT 1886
|||||| ||||| ||||| || |||||||| ||||||||||||||||||||||| |||||
Sbjct 1885 ATCTTTTCGTGATGCCCTGCTTCTTACAATAGTTGGTTACATTCTTGCTGGCGAAAATTT 1944
Query 1887 CCCTACATCTGGCTCAGGTGGGCCTTTCTCTTGGCAAGAAGAGCATTTTCTAAAAGAAGC 1946
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1945 CCCTACATCTGGCTCAGGTGGGCCTTTCTCTTGGCAAGAAGAGCATTTTCTAAAAGAAGC 2004
Query 1947 CATTGTCGATGCTGTTCTCGAGAATCCATCAGTAGGAAATCTCAAGTTTCTTAATGGGTT 2006
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 2005 CATTGTCGATGCTGTTCTGGAGAATCCATCAGCAGGAAATCTCAAGTTTCTTAATGGGTT 2064
Query 2007 GACAGAAGAGCTTGAGGGCAGATTGAATCGTCTCAAGTCCGAGGAAACCAAAGAAATTCC 2066
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2065 GACAGAAGAGCTTGAGGGCAGATTGAATCGTCTCAAGTCTGAGGAAACCAAAGAAATTCC 2124
Query 2067 ATCTGAAGATCAATTAGACATTGATGCTCTTGATGATGATCCATGGGGGAAATGGGGTGA 2126
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2125 CTCTGATGATCAATTAGACATTGATGCTCTTGATGATGATCCATGGGGGAAATGGGGTGA 2184
Query 2127 CGAGGAAGAAGAAGAAGTTGACAATAGTAAAGCAGACGAATCCTATGACGATATGCAGCT 2186
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2185 CGAGGAAGAAGAAGAAGTTGACAATAGTAAAGCAGACGAGTCCTATGACGATATGCAGCT 2244
Query 2187 GAAACTGGATTTGCGTGATAGAGTAGACAGCTTGTTTAGGTTTCTCCACAAGTTATCGAG 2246
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 2245 GAAACTGGATTTGCGTGATAGAGTAGACAGCTTATTTAGGTTCCTCCACAAGTTATCGAG 2304
Query 2247 TCTAAGAACAAGGAATCTACCATTAAAAGAAGGATCTTTGGCTTCAGAGAGCAGCTTTCC 2306
|||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||
Sbjct 2305 TCTAAGAACAAGGAATCTACCATTAAGAGAAGGCTCATTGGCTTCAGAGAGCAGCTTTCC 2364
Query 2307 CGGCGATCCTTCTGGAAACAAAGGGCTACTCAACAGGCTTATAACAAAAGTGTTGAGCAA 2366
||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 2365 TGGCGAGCCTTCTGGAAACAAAGGGCTAGTCTACAGGCTTATAACAAAAGTGTTGAGCAA 2424
Query 2367 ACAAGAGATACCCGGTTTAGAATACCATTCTTCTACTGTCGGCAGGTTTATTAAAAGCGG 2426
||||||||||||||||||||||||||||||||| ||||| || || ||||||||||||||
Sbjct 2425 ACAAGAGATACCCGGTTTAGAATACCATTCTTCAACTGTTGGAAGATTTATTAAAAGCGG 2484
Query 2427 GTTTGGAAGGTTTGGTCTTGGTCAGGCAAGACCAAGCCTGGCAGACCAGAGTGTCATTCT 2486
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2485 ATTTGGAAGGTTTGGTCTTGGTCAGGCAAAACCAAGCCTGGCAGACCAGAGTGTCATTCT 2544
Query 2487 TGTCTTTGTCATTGGAGGTATCAATGGTCGAGAGGT 2522
|||||||||||||||||||||||| ||| ||||||
Sbjct 2545 TGTCTTTGTCATTGGAGGTATCAACGGTATAGAGGT 2580
Score = 272 bits (147), Expect = 1e-71
Identities = 171/182 (94%), Gaps = 4/182 (2%)
Strand=Plus/Plus
Query 2519 AGGTTTTGGAAGCTCAAGAGGCTGTGTCAGAGAGCGGAAGACCGGACATTAACTTGGTTA 2578
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2664 AGGTTTTGGAAGCTCAAGAGGCTGTGTCAGAGAGCGGAAGACCAGACATTAACTTGGTTA 2723
Query 2579 TCGGAGGAACGACACTTCTAACTCCCGACGACATGTTCGAGTTATTGTTGGGACAGTTCA 2638
| |||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||
Sbjct 2724 TTGGAGGAACGACACTTCTAACCCCCGACGACATGTTTGAGTTATTGTTGGGACAATTCA 2783
Query 2639 GCCATTTTTGATCTCTTCCTGAAA--GACCTCACTCTCATAATCTCTGTTGTTAGCTTGT 2696
|||||||||||| |||| | ||| ||||||||||||||||||||||||||||||||||
Sbjct 2784 GCCATTTTTGATATCTTGC--AAACTGACCTCACTCTCATAATCTCTGTTGTTAGCTTGT 2841
Query 2697 AA 2698
||
Sbjct 2842 AA 2843
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 133995904753
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5