BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483366
Length=1459
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42710.1 | Symbols: | Ribosomal protein L1p/L10e family | c... 2135 0.0
> AT2G42710.1 | Symbols: | Ribosomal protein L1p/L10e family |
chr2:17782308-17785063 FORWARD LENGTH=1525
Length=1525
Score = 2135 bits (1156), Expect = 0.0
Identities = 1260/1311 (96%), Gaps = 4/1311 (0%)
Strand=Plus/Plus
Query 150 CCGATTCAAACGAATCTCGCAAAAAGCCTGTTACAATCGAGCCAGTATCGTACGCCGCCA 209
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 196 CCGATTCAAACGAATCTCGCAAAAAGGCTGTTACAATCGAGCCAGTATCGTACGCGGCCA 255
Query 210 AACCCAAGGATCCGAAATCTGAACCTACAAATGTTGAATCGACGGAGAACCTTCAGTCTC 269
|||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 256 AACCCAAGGATCAGAAATCTGAACCGAAAAATGTTGAATCGACGGAGAACCTTCAGTCTC 315
Query 270 CGGAATCATCGAACTGGACTCGTGAAGAAATCCGATATGTGAAAGATTCTCCTTCGATCA 329
| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 316 CAGAATCAGCGAACTGGACTCGTGAAGAAATCCGATATGTGAAAGACTCTCCTTCGATCA 375
Query 330 ATCCGGTTTCTTACGCTCAGCGTGTGGCTCCGCTTCCGGAGGATCGCGTCGCCGGTgaga 389
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 376 ATCCGGTTTCTTACGCTCAGCGTGTGGCTCCACTTCCGGAGGATCGTGTCGCCGGTGAGA 435
Query 390 atgaaggagagagaactccggaggagatggagagggaaaggaagaggattgaattagaga 449
|||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 436 ATGAAGGAGATAGAACTCCAGAGGAGATGGAGAGGGAGAGGAAGAGGATTGAATTAGAGA 495
Query 450 aTCGAGCTAGAAGAAGGTTCTTAAGAGCTAATGCTGTTGAAGAAGATACTTCTTCACTTC 509
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 496 ATCGAGCTAGAAGAAGGTTTTTAAGAGCTAATGCTGTTGAAGAAGATACTTCTTCACTTC 555
Query 510 CTTTGCCAACTTTGCTTAAACCAGAGCTGAAGCATGGAAAGAAACCTATTTTCGATCTCA 569
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 556 CTTTGCCAACTTTGCTTAAACCAGAGTTGAAGCATGGAAAGAAACCTATTTTCGATCTCA 615
Query 570 TGGAGGCCATTAGAGAGATTAAGGGCAATGCCAAGGCGAAATTTGATGAAACTCTTGAGG 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 616 TGGAGGCCATTAGAGAGATTAAGGGCAATGCCAAGGCGAAATTTGATGAAACTCTTGAGG 675
Query 630 CACATGTGAGATTGGGCATTGAAAAAGGAAGATCTGAGCTGATAGTTCGTGGTACTTTGG 689
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 676 CGCATGTGAGATTGGGCATTGAAAAAGGAAGATCTGAGCTGATAGTTCGTGGTACTTTGG 735
Query 690 CTCTACCCCACTCTGTTAAAAAGGATGTGAAAGTGGCTTTCTTTGCTGAGGGAGCTGATG 749
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 736 CTCTACCCCACTCTGTTAAGAAGGATGTGAAAGTGGCTTTCTTTGCCGAGGGAGCTGATG 795
Query 750 CAGAGGATGCAAAAGCTGCAGGAGCTGATGTCGTTGGTGGTCTTGAGCTTATTGAAGAAA 809
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 796 CAGAGGATGCAAAAGCTGCAGGAGCTGATGTCGTTGGTGGTCTTGAGCTTATTGAAGAGA 855
Query 810 TCTTGAAAAGCGGCAAGATCGACTTTGATAGATGTCTTGCAACTCCAAAAATGATGCCCC 869
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 856 TCTTGAAAAGTGGCAAGATTGACTTTGATAGATGTCTTGCAACTCCAAAAATGATGCCCC 915
Query 870 GTGTTTACAAGATATCAAGGATTCTTAACAATCACGGTTTGATGCCAAACCCCAAACAAG 929
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 916 GTGTTTACAAGATATCAAGAATTCTTAACAATCATGGTTTGATGCCAAACCCCAAACAAG 975
Query 930 GTAGTGTGACCAAGGATGTTACGAAAGCAGTCAAAGACGCAAAAGCTGGACATACCAAAT 989
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 976 GTAGTGTGACCAAGGATGTTACGAAAGCAGTCAAAGACGCAAAAGCTGGACATACCAAAT 1035
Query 990 TCAGAATGGATAAAACGTCTATTCTTCATGTGCCACTTGGAAAGATGAGCTTTCCTGAAG 1049
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1036 TTAGAATGGATAAAACGTCTATTCTTCATGTGCCACTTGGAAAGATGAGCTTTTCTGAAG 1095
Query 1050 AGGCTTTACGAGAGAATGTTGGTGCGTTTATGAACGCCCTTTTGCTAGCAAAGCCTGCCG 1109
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1096 AGGCTTTACGAGAGAATGTTGGTGCGTTTATGAACGCCCTTTTGCTAGCGAAGCCTGCTG 1155
Query 1110 GATTGAAAAAGACTTCAAAATATGCTGGTTATGTGAATGCATTCCACTTATGCAGTACGA 1169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1156 GATTGAAAAAGACTTCAAAATATGCTGGTTATGTGAATGCATTCCACTTATGCAGTACGA 1215
Query 1170 TGGGAAAGGGTTATCCGGTATCGATACAGTCGTTATCTAGAGCAGCGGATCTCCATACCA 1229
|||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1216 TGGGAAAGGGTTATCCAGTATCGATACAGTCGTTATCCAGAGCAGCGGACCTCCATACCA 1275
Query 1230 AATTACAGCTCAAGTGAGCTAGTAGACTCCAAAAGATAAAAAATCTTAATTATCCCGGAA 1289
|||| |||||||||||||||||| || |||||||||| || ||||||| |||||| ||
Sbjct 1276 AATTGCAGCTCAAGTGAGCTAGTGGAGTCCAAAAGATTAA---TCTTAATCATCCCGTAA 1332
Query 1290 AGGTTGATTAAACTGTTTTTCAAATGCTGAATCTTTGAAA-CATTATGATATGTTGTCTC 1348
| ||| || |||||||| |||||||||||||||||||| ||||||||| |||||||||
Sbjct 1333 AAGTTTTTTTTACTGTTTTCCAAATGCTGAATCTTTGAAAACATTATGATTTGTTGTCTC 1392
Query 1349 TTAGGTAGTCTATTGCTCAATTGATCGAATTGGCTTCAGTCTTTTTCTCCTTTGTTTTTG 1408
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 1393 TTAGGTAGTCTATTGCTCAATTGATCGAATTGGCTTCTGTCCTTTTCTCCTTTGTTTTTG 1452
Query 1409 TTGTTTGAGAGCTTATCATCCACTTCCCATAAAGGCCCTTCACTTGAATAA 1459
||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1453 TTGTTTGAGAGCTTATCATCCACTTTCCATAGAGGCCCTTCACTTGAATAA 1503
Score = 220 bits (119), Expect = 2e-56
Identities = 141/151 (93%), Gaps = 4/151 (3%)
Strand=Plus/Plus
Query 1 AAAATCACATTTCACACGGAAAACCTC-A--GAGTGAA-CAACAATGGCAGCTATGAAGC 56
|||||||||||||||||| |||||||| | ||||||| ||||||||||||||||||||
Sbjct 1 AAAATCACATTTCACACGAAAAACCTCGAGTGAGTGAAGAAACAATGGCAGCTATGAAGC 60
Query 57 TTCTACTCTCTCAAGCTCGCCGCCAAGGTCTAATCAAACCCTTTTCATCTCCATTTCAAC 116
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 61 TCCTACTCTCTCAAGCTCGCCGCCAAGGTCTAATCAAACCCTTTTCGTCTCCATTTCAAC 120
Query 117 AAATCCCTAGACTCTTCTCTTCCTCTTCATC 147
||||||| |||||||||||||| ||||||||
Sbjct 121 AAATCCCAAGACTCTTCTCTTCATCTTCATC 151
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71937380985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5